DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Rnf11; N4wbp2; Sid1669 ATTTA 139-603 771-775;1192-1196;1888-1892 Rnf11; N4wbp2; Sid1669 WTATTTATW 139-603 1190-1198 Rnf11; N4wbp2; Sid1669 WWATTTAWW 139-603 1190-1198 Rnf11; N4wbp2; Sid1669 WWTATTTATWW 139-603 1189-1199 Rnf11; N4wbp2; Sid1669 WWWATTTAWWW 139-603 1189-1199

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT594087 mmu-miR-129-5p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT594089 mmu-miR-199a-5p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT012414 mmu-miR-19b-3p Mus musculus Rnf11 29864 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT012414 mmu-miR-19b-3p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT589026 mmu-miR-19a-3p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT009582 mmu-miR-223-3p Mus musculus Rnf11 29864 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT008180 mmu-miR-541-5p Mus musculus Rnf11 29864 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT007820 mmu-miR-301b-3p Mus musculus Rnf11 29864 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT589021 mmu-miR-466h-5p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT589018 mmu-miR-1188-5p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT589022 mmu-miR-466j Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT594088 mmu-miR-669n Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT589019 mmu-miR-466m-5p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT589025 mmu-miR-669a-3p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT589024 mmu-miR-669a-3-3p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT589020 mmu-miR-669m-5p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT589023 mmu-miR-669o-3p Mus musculus Rnf11 29864 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004522 mmu-miR-27b* 29864 Rnf11 caaGUGGUUAGUCGAUUCGAGa :| :|:|: :||||||: aaaUAGUAGUU--UUAAGCUUg 2 20 463 482 [mm9:4:109126374-109126393:-] 0.7381 128 0 -10.21 -0.1742 MIMAT0004523 mmu-miR-29b* 29864 Rnf11 auuugGUGGUAU--AC-UUUGGUCg | |:||: || ||||||| gcuggCUCUAUGCUUGAAAACCAGu 2 18 562 586 [mm9:4:109126270-109126294:-] 0.7553 147 7 -15.34 -1.1314 MIMAT0000129 mmu-miR-30a* 29864 Rnf11 cgacGUUUGUAGGCUGACUUUc ||||: :: |||||| caccCAAAUUCUUUUCUGAAAa 2 19 375 396 [mm9:4:109126460-109126481:-] 0.6872 122 6 -9.91 -0.1489 MIMAT0004525 mmu-miR-99b* 29864 Rnf11 gccugggugucuguGCUCGAAc :|||||| uauuucugauuuguUGAGCUUu 2 9 831 852 [mm9:4:109126004-109126025:-] 0.6429 124 6 -10.34 -0.1123 MIMAT0000143 mmu-miR-9* 29864 Rnf11 ugAAAGCC--AAUAGAUCGAAAUa |||| | ||:|: ||||||: uaUUUCUGAUUUGUUGAGCUUUGa 2 21 831 854 [mm9:4:109126002-109126025:-] 0.6429 147 0 -10.74 -0.1795 MIMAT0004539 mmu-miR-183* 29864 Rnf11 aauaccgggaagccaUUAAGUg |||||| ugaaagucaaguugaAAUUCAa 2 8 802 823 [mm9:4:109126033-109126054:-] 0.6429 120 6 -8.86 -0.1605 MIMAT0004540 mmu-miR-186* 29864 Rnf11 gggUUUUUUAAGU---GGAAUCCcg | ::|||||| ||||||| gaaAUGGAAUUCAUUGCCUUAGGuc 3 20 508 532 [mm9:4:109126324-109126348:-] 0.7629 142 0 -16.24 -0.1652 MIMAT0004540 mmu-miR-186* 29864 Rnf11 ggguuuuuuaagUGGAAUCCCg | :|||||| ugauauuuuagaAAUUUAGGGg 2 11 155 176 [mm9:4:109126680-109126701:-] 0.6884 126 6 -10.84 -0.1200 MIMAT0004540 mmu-miR-186* 29864 Rnf11 ggguuuuuuaagUGGAAUCCcg | |||||| uguguguguugaAGCUUAGGaa 3 11 309 330 [mm9:4:109126526-109126547:-] 0.6875 122 0 -7.66 -0.1963 MIMAT0004546 mmu-miR-202-5p 29864 Rnf11 uuucuucauaUACGUAUCCUu :| ||||||| ucuugcuccaGUACAUAGGAa 2 12 251 271 [mm9:4:109126585-109126605:-] 0.6875 143 7 -12.06 -1.1580 MIMAT0000249 mmu-miR-30e* 29864 Rnf11 cgacauuuguaggcuGACUUUc |||||| cacccaaauucuuuuCUGAAAa 2 8 375 396 [mm9:4:109126460-109126481:-] 0.6872 120 6 -6.67 -0.1489 MIMAT0004573 mmu-miR-293* 29864 Rnf11 guUUUACAGUGU--GUCAAAC-UCa ||:|| :|:| | ||||| || guAAGUGCUAUAUUCUGUUUGCAGu 2 21 603 627 [mm9:4:109126229-109126253:-] 0.7477 123 0 -13.81 -0.8785 MIMAT0004575 mmu-miR-295* 29864 Rnf11 cuucACACGGGGUGUA-AACUCa || ||: || || ||||| uggaUG-GCUGCAGAUGUUGAGg 2 19 125 146 [mm9:4:109126710-109126731:-] 0.6884 120 0 -14.00 -0.7433 MIMAT0000376 mmu-miR-298 29864 Rnf11 cccUUCUUGUCGGGA---GGAGACGg |||||:| |:|| :|||||| uguAAGAAUA-CUCUAAAUCUCUGCa 2 21 1208 1232 [mm9:4:109125624-109125648:-] 0.6498 145 6 -21.89 -0.1960 MIMAT0000378 mmu-miR-300 29864 Rnf11 cuucucucGAACGGGAACGUau :|| ::|||||| cuccuuuaUUUUUUCUUGCAau 3 15 1183 1204 [mm9:4:109125652-109125673:-] 0.6224 130 0 -10.14 -0.1205 MIMAT0004579 mmu-miR-302a* 29864 Rnf11 cgUUC--AUGUUGGU-GCAAAUUca ||| | | ||| :|||||| uaAAGCCUUGACCCAGUGUUUAAaa 3 21 204 228 [mm9:4:109126628-109126652:-] 0.7255 130 0 -8.25 -0.2708 MIMAT0004579 mmu-miR-302a* 29864 Rnf11 cguucAUGUUGGUGCAA-AUUCa ||:|||| :||| |||| uuauuUAUAACC-UGUUGUAAGu 2 18 587 608 [mm9:4:109126248-109126269:-] 0.7477 127 0 -13.77 -0.6894 MIMAT0004579 mmu-miR-302a* 29864 Rnf11 cguucauguuggugcAAAUUCa |||||| aaaaaaaauaguaguUUUAAGc 2 8 458 479 [mm9:4:109126377-109126398:-] 0.7381 120 6 -4.88 -0.1553 MIMAT0004616 mmu-miR-30c-1* 29864 Rnf11 ccucaUUUGUU---GGGAGAGGGUc |||:|| :|:||||||| aaaugAAAUAAGUUUCUUCUCCCAc 2 18 353 377 [mm9:4:109126479-109126503:-] 0.6873 156 7 -18.46 -0.9418 MIMAT0005438 mmu-miR-30c-2* 29864 Rnf11 ucUCAUUUGUCGGAAGAGGGUc | |||:: :||||||||| gaAAUAAGU-UUCUUCUCCCAc 2 21 357 377 [mm9:4:109126479-109126499:-] 0.6873 158 7 -17.93 -0.9418 MIMAT0004617 mmu-miR-148a* 29864 Rnf11 ucAGCCUCAC-AGAG---UCUUGAAa | | ||| |||| :|||||| caUAGUUGUGAUCUCAAAGGAACUUc 2 21 1158 1183 [mm9:4:109125673-109125698:-] 0.6224 134 6 -15.94 -0.1151 MIMAT0004620 mmu-let-7a* 29864 Rnf11 ccuUUCUGUCAUCU--AACAUAUc || :||| ||: ||||||| accAAUGCAGCAGGGUUUGUAUAa 2 20 1123 1146 [mm9:4:109125710-109125733:-] 0.6224 158 7 -10.82 -0.6363 MIMAT0004621 mmu-let-7b* 29864 Rnf11 cccUUCCGUCAUCC--AACAUAUc || |||| ||| ||||||| accAAUGCAGCAGGGUUUGUAUAa 2 20 1123 1146 [mm9:4:109125710-109125733:-] 0.6224 166 7 -14.32 -0.6289 MIMAT0005439 mmu-let-7c-2* 29864 Rnf11 ccuUUCUGUCAUCU--AACAUAUc || :||| ||: ||||||| accAAUGCAGCAGGGUUUGUAUAa 2 20 1123 1146 [mm9:4:109125710-109125733:-] 0.6224 158 7 -10.82 -0.6363 MIMAT0004623 mmu-let-7f* 29864 Rnf11 cccUUCCGUUAUCU--AACAUAUc || |||: ||: ||||||| accAAUGCAGCAGGGUUUGUAUAa 2 20 1123 1146 [mm9:4:109125710-109125733:-] 0.6224 158 7 -11.28 -0.6363 MIMAT0004627 mmu-miR-20a* 29864 Rnf11 gaAAU-UCACGAGCAUUACGUCa ||: ||| : | ||||||| guUUGCAGU-UAGGAAAUGCAGa 2 21 619 640 [mm9:4:109126216-109126237:-] 0.7477 145 7 -10.32 -1.2221 MIMAT0004627 mmu-miR-20a* 29864 Rnf11 gaaauucACGAG-CAUUACGUCa ||| | ||||||| uauguuuUGCACACCAAUGCAGc 2 16 1111 1133 [mm9:4:109125723-109125745:-] 0.6224 142 7 -9.68 -0.1247 MIMAT0004635 mmu-miR-92a* 29864 Rnf11 cauuacggugguuaGGGGUGGa :|||||| aaauaaguuucuucUCCCACCc 2 9 358 379 [mm9:4:109126477-109126498:-] 0.6873 124 6 -14.88 -0.1748 MIMAT0000551 mmu-miR-323-3p 29864 Rnf11 ucuCCAGCUGG---CACAUUACAc |||| | : ||||||||| aauGGUCUAGUAAAGUGUAAUGUu 2 19 1255 1278 [mm9:4:109125578-109125601:-] 0.6773 153 7 -15.54 -1.1646 MIMAT0000551 mmu-miR-323-3p 29864 Rnf11 ucuccagcuggcacAUUACAc |||||| uuuuuucuugcaauUAAUGUa 2 8 1191 1211 [mm9:4:109125645-109125665:-] 0.6224 120 6 -2.82 -0.1157 MIMAT0000569 mmu-miR-330* 29864 Rnf11 agAGACGUCCGGGACACGAAACg |||| | : :|| |||||| uuUCUG-AUUUGUUGAGCUUUGa 2 22 833 854 [mm9:4:109126002-109126023:-] 0.6429 127 6 -16.79 -0.2116 MIMAT0004647 mmu-miR-338-5p 29864 Rnf11 gugagucGUG-GUC-CUAUAACAa ||| ||| |||||||| uuccuucCACUCAGUGAUAUUGUg 2 16 1328 1351 [mm9:4:109125505-109125528:-] 0.6003 157 7 -18.88 -0.2430 MIMAT0004647 mmu-miR-338-5p 29864 Rnf11 guGAGUCGUGGUCCUAU-AACAa ||:|| | | |||| |||| agCUUAGGAAAAAGAUAGUUGUu 2 21 321 343 [mm9:4:109126513-109126535:-] 0.6875 128 0 -13.22 -1.1806 MIMAT0004661 mmu-miR-28* 29864 Rnf11 aggUCGUCGAGUGUUAGAUCAc :|:|| |:::|||||| agaGGUAG-AAAUGGUCUAGUa 2 20 1246 1266 [mm9:4:109125590-109125610:-] 0.6773 133 6 -14.98 -0.1981 MIMAT0005444 mmu-miR-218-2* 29864 Rnf11 gcgccAC-GAACUGU-CUUGGUAc || ||| | : ||||||| ucgucUGACUUCAAGUGAACCAUc 2 18 12 35 [mm9:4:109126821-109126844:-] 0.5905 147 7 -12.26 -0.2788 MIMAT0005444 mmu-miR-218-2* 29864 Rnf11 gcgccacgaACUG-UCUUGGUAc || | :||||||| uuuccccacUGUCUGGAACCAUa 2 14 958 980 [mm9:4:109125876-109125898:-] 0.6384 144 7 -11.42 -0.5933 MIMAT0000672 mmu-miR-199b* 29864 Rnf11 cuUGUCCA--UCAGAU-UUGUGACCc | || | | |:|| |||||||| uaAAAGCUACAUUUUAUAACACUGGc 2 22 425 450 [mm9:4:109126406-109126431:-] 0.6872 155 7 -12.63 -1.2517 MIMAT0004670 mmu-miR-7a* 29864 Rnf11 auaccgucuGACACUAAACAAc :| ||||||||| uauuaauauUUCUGAUUUGUUg 2 14 825 846 [mm9:4:109126010-109126031:-] 0.6429 153 7 -12.15 -0.6928 MIMAT0000742 mmu-miR-378* 29864 Rnf11 ugugUCCUGGAC--CUCAGUCCUc | || :|| | ||||||| aagaAUGAGUUGAUGUGUCAGGAa 2 19 698 721 [mm9:4:109126135-109126158:-] 0.6429 149 7 -14.92 -1.1535 MIMAT0000745 mmu-miR-380-3p 29864 Rnf11 uucuacaccuggUAUGAUGUAu | :|||||| agguuuuauuaaAAGCUACAUu 2 11 416 437 [mm9:4:109126419-109126440:-] 0.6872 126 6 -8.92 -0.2357 MIMAT0004704 mmu-miR-335-3p 29864 Rnf11 ccaguccucguuaUUACUUUuu ||||||| guuauuuuuccuaAAUGAAAua 3 10 341 362 [mm9:4:109126494-109126515:-] 0.6875 125 0 -4.26 -0.1498 MIMAT0004704 mmu-miR-335-3p 29864 Rnf11 ccaguccucguuauuACUUUUu |||||| acccaaauucuuuucUGAAAAg 2 8 376 397 [mm9:4:109126459-109126480:-] 0.6872 120 6 -4.29 -0.1561 MIMAT0001094 mmu-miR-412 29864 Rnf11 gccGAU-CACCUGGUCCACUu :|| || |||||||| uccUUAUGUUCUCCAGGUGAu 2 18 1304 1324 [mm9:4:109125532-109125552:-] 0.6773 148 7 -16.41 -0.7618 MIMAT0002104 mmu-miR-463* 29864 Rnf11 uacUACCU---GUUGUUUAAUCCAu ||||| || :: |||||| gaaAUGGAAUUCAUUGCCUUAGGUc 2 20 508 532 [mm9:4:109126324-109126348:-] 0.7629 122 6 -12.46 -0.2014 MIMAT0004758 mmu-miR-463 29864 Rnf11 gauGGAAUAUACCACAG-AUAGu ||||:| ||||| |||| uuuCCUUGU---GUGUCUUAUCu 2 20 752 771 [mm9:4:109126085-109126104:-] 0.6429 123 0 -16.07 -0.8726 MIMAT0002106 mmu-miR-465a-5p 29864 Rnf11 agUGUAGUCACGGUAAGAUUUAu |::| || :| ||||||| uaAUGUAAG-AAUACUCUAAAUc 2 22 1205 1226 [mm9:4:109125630-109125651:-] 0.6498 147 7 -6.92 -0.5043 MIMAT0002106 mmu-miR-465a-5p 29864 Rnf11 aguguagucacgguaaGAUUUAu |||||| auaguuguuauuuuucCUAAAUg 2 8 335 357 [mm9:4:109126499-109126521:-] 0.6875 120 6 -11.75 -0.2681 MIMAT0003166 mmu-miR-546 29864 Rnf11 cugaggcACGGUGGUa |||||||| ugaauuaUGCCACCAu 2 10 852 867 [mm9:4:109125989-109126004:-] 0.6407 145 7 -15.68 -1.1707 MIMAT0003186 mmu-miR-369-3p 29864 Rnf11 uuucuAGUUGGUACAUAAUAa | ||: :|||||||| cuuuuUAAAUAGUGUAUUAUu 2 17 532 552 [mm9:4:109126304-109126324:-] 0.7629 156 7 -9.66 -1.1530 MIMAT0004790 mmu-miR-503* 29864 Rnf11 gguccgucaccuuugUUAUGAg |||||| ugcaauuaauguaagAAUACUc 2 8 1199 1220 [mm9:4:109125636-109125657:-] 0.6224 120 6 -10.87 -0.1333 MIMAT0003190 mmu-miR-291b-3p 29864 Rnf11 uguuuGUUUUACCUACGUGAAa | |||| ||||||| auacuCUAAAUCUCUGCACUUc 2 18 1215 1236 [mm9:4:109125620-109125641:-] 0.6498 153 7 -8.83 -0.6061 MIMAT0003373 mmu-miR-302b* 29864 Rnf11 ucuuucguaaggguacAAUUUCa |||||| ggcaccaugaugaaacUUAAAGa 2 8 888 910 [mm9:4:109125946-109125968:-] 0.6384 120 6 -10.10 -0.1283 MIMAT0003375 mmu-miR-302c* 29864 Rnf11 cguccauugggguacAAUUUCg |||||| gcaccaugaugaaacUUAAAGa 2 8 889 910 [mm9:4:109125946-109125967:-] 0.6384 120 6 -9.84 -0.1309 MIMAT0003733 mmu-miR-665 29864 Rnf11 ucccuGGA-GUCGGAGGACCa ||| | :|||||| aguuuCCUAAAAAUUCCUGGa 2 16 108 128 [mm9:4:109126728-109126748:-] 0.7293 126 6 -17.05 -0.1006 MIMAT0015219 mmu-miR-3475 29864 Rnf11 aaGUUUGGUAC---ACGGAGGUCu :|:||| || | |||||| auUAGACCUUGUUCUUGCUCCAGu 2 20 239 262 [mm9:4:109126594-109126617:-] 0.6875 122 6 -19.70 -0.1018 MIMAT0004188 mmu-miR-802 29864 Rnf11 uuccuACUUAGA-AACAAUGACu || |||| ||||||||| gauacUGCAUCUCUUGUUACUGu 2 18 988 1010 [mm9:4:109125846-109125868:-] 0.6384 168 7 -15.93 -0.6826 MIMAT0004188 mmu-miR-802 29864 Rnf11 uuccuacuuagaaaCAAUGACu ||||||| uucuuuucugaaaaGUUACUGa 2 9 383 404 [mm9:4:109126452-109126473:-] 0.6872 140 7 -11.07 -1.1993 MIMAT0003897 mmu-miR-759 29864 Rnf11 caGUUUUAACAAACGUG-AGACg | ||| | | ||||| |||| cuCUAAA-UCUCUGCACUUCUGa 2 21 1218 1239 [mm9:4:109125617-109125638:-] 0.6498 126 0 -12.89 -0.8053 MIMAT0003740 mmu-miR-674 29864 Rnf11 auGUGGUGAGGGUAGAGUCACg |::: ||:||| ||||||| uuCGUUCCUUCCA-CUCAGUGa 2 21 1324 1344 [mm9:4:109125512-109125532:-] 0.6388 162 7 -25.10 -1.0620 MIMAT0003451 mmu-miR-677 29864 Rnf11 agucUUCGAUUAGUAGUGACUu :| || |::||||||| uuuuGAUCU-UUUGUCACUGAg 2 19 47 67 [mm9:4:109126789-109126809:-] 0.7702 148 7 -15.09 -0.5114 MIMAT0003455 mmu-miR-679 29864 Rnf11 ugGUUCUCAGUGGA-GUGUCAGg :||| |::::| ||||||: uuUAAG-CUUGUUUGCACAGUUc 2 21 473 494 [mm9:4:109126362-109126383:-] 0.7760 133 0 -17.57 -0.1936 MIMAT0003459 mmu-miR-682 29864 Rnf11 guCUGAAGUGA--CACUGAC-GUc | ||| :|| ||||||| || caGUCUU-GCUAGGUGACUGACAg 2 20 1073 1095 [mm9:4:109125761-109125783:-] 0.6304 120 0 -21.17 -0.2114 MIMAT0003462 mmu-miR-684 29864 Rnf11 aacugAACUUC----CCUUUUga |||||| |||||| gugugUUGAAGCUUAGGAAAAag 3 15 312 334 [mm9:4:109126522-109126544:-] 0.6875 129 0 -11.63 -0.1333 MIMAT0003470 mmu-miR-691 29864 Rnf11 aaaagacggagagaAGUCCUUa ||||||| aaugaguugaugugUCAGGAAa 2 9 701 722 [mm9:4:109126134-109126155:-] 0.6429 140 7 -11.22 -0.8567 MIMAT0004189 mmu-miR-693-3p 29864 Rnf11 aaUGUCGGUGUAGACUUUCGAcg | :|:: :|| | |||||| ucAAGGUUUUAU-UAAAAGCUac 3 22 413 434 [mm9:4:109126422-109126443:-] 0.6872 131 0 -8.73 -0.1887 MIMAT0003474 mmu-miR-694 29864 Rnf11 gaaGUCCGU-UGUAAAAGuc || |:: :|||||| uagCAUGUGUUUAUUUUCcu 3 17 1288 1307 [mm9:4:109125549-109125568:-] 0.6773 123 0 -5.22 -0.1006 MIMAT0003476 mmu-miR-669b 29864 Rnf11 uguacgUGU-ACGUGUGUUUUga ||| || :||||||| uuuauaACACUG-GCACAAAAaa 3 17 437 458 [mm9:4:109126398-109126419:-] 0.6872 133 0 -13.39 -0.1615 MIMAT0003478 mmu-miR-467b* 29864 Rnf11 caCAACCACACACAUACA-UAUa |||| | |||||| ||| auGUUGAGGGAAGUAUGUGAUAu 2 21 138 160 [mm9:4:109126696-109126718:-] 0.6884 124 0 -15.08 -1.0583 MIMAT0003485 mmu-miR-455* 29864 Rnf11 gcuACAUCAGGUUUCCGUGUau | || || |||||| cauUUUAUAACACUGGCACAaa 3 20 434 455 [mm9:4:109126401-109126422:-] 0.6872 127 0 -10.75 -0.4856 MIMAT0003487 mmu-miR-697 29864 Rnf11 agAGGUGUCC---UGGUCCUACaa |::| :|| | :|||||| aaUUUAGGGGGAAAGUAGGAUGga 3 20 167 190 [mm9:4:109126666-109126689:-] 0.6884 126 0 -17.40 -0.1028 MIMAT0003493 mmu-miR-703 29864 Rnf11 aagAAAGGAAGACUUCCAAAa ||| || ||||||| acaUUUGGGUC--AAGGUUUu 2 19 404 422 [mm9:4:109126434-109126452:-] 0.6872 143 7 -9.40 -0.7259 MIMAT0003495 mmu-miR-705 29864 Rnf11 acgggUGGGGUGGAGGGUGg ::::| :||||||| aauaaGUUUCUUCUCCCACc 2 16 359 378 [mm9:4:109126478-109126497:-] 0.6873 147 7 -21.93 -1.0861 MIMAT0003496 mmu-miR-706 29864 Rnf11 aaaAAACUCUGUCCCAAAGAGa || ||| | ||||||| aacUUAAAGAAACAGUUUCUCa 2 20 901 922 [mm9:4:109125934-109125955:-] 0.6384 155 7 -10.65 -1.0718 MIMAT0003497 mmu-miR-707 29864 Rnf11 gcaucCGU-UCGCCGUACUGAc |:| | | ||||||| gguuuGUAUAACCACAUGACUu 2 17 1136 1157 [mm9:4:109125699-109125720:-] 0.6224 143 7 -12.50 -0.4406 MIMAT0003502 mmu-miR-712 29864 Rnf11 ccauGGCGGGCCCACUUCCUc |:|| | ||||||| aucuCUGCACUUCUGAAGGAu 2 18 1224 1244 [mm9:4:109125612-109125632:-] 0.6773 149 7 -14.44 -0.6635 MIMAT0003508 mmu-miR-501-5p 29864 Rnf11 aaagUGGGUCCCUGUUUCCUAa | ||| | ||||||| cuggAACCAUAGCAAAAGGAUa 2 19 970 991 [mm9:4:109125865-109125886:-] 0.6384 150 7 -12.28 -0.8729 MIMAT0003511 mmu-miR-450b-5p 29864 Rnf11 auaAGUCC-UUG-UAUGA-CGUUUu ||||| ||| | :|| ||||| gugUCAGGAAACAAGGCUAGCAAAg 2 20 712 736 [mm9:4:109126120-109126144:-] 0.6429 129 0 -19.52 -0.4830 MIMAT0004236 mmu-miR-741 29864 Rnf11 agaUGUA-UCUUACCG----UAGAGAgu |::| ||||| : |||||| uuaAUGUAAGAAUACUCUAAAUCUCUgc 3 21 1204 1231 [mm9:4:109125625-109125652:-] 0.6498 122 0 -10.55 -0.1070 MIMAT0004238 mmu-miR-743a 29864 Rnf11 agaUGAGU--CGAACCACAGAAAg |:||| || | |||||| ggaAUUCAUUGCCUUAGGUCUUUu 2 20 513 536 [mm9:4:109126320-109126343:-] 0.7629 122 6 -11.28 -0.2625 MIMAT0004839 mmu-miR-743b-5p 29864 Rnf11 acuaccUGUGGUCAGACUUgu |: |: |||||| acccaaAUUCUUUUCUGAAaa 3 16 376 396 [mm9:4:109126460-109126480:-] 0.6872 123 0 -7.05 -0.1358 MIMAT0004840 mmu-miR-743b-3p 29864 Rnf11 agaUAAGU--CGUACUACAGAAAg ||||| || | | |||||| ggaAUUCAUUGCCUUAGGUCUUUu 2 20 513 536 [mm9:4:109126320-109126343:-] 0.7629 134 6 -10.66 -0.2625 MIMAT0004841 mmu-miR-871 29864 Rnf11 guacugaccguGAUUAGACUUau || |||||| ccacccaaauuCUUUUCUGAAaa 3 13 374 396 [mm9:4:109126460-109126482:-] 0.6873 124 0 -8.02 -0.1373 MIMAT0004846 mmu-miR-881 29864 Rnf11 agauaagucuuuucUGUGUCAa :|||||| uuuuaagcuuguuuGCACAGUu 2 9 472 493 [mm9:4:109126363-109126384:-] 0.7891 124 6 -9.45 -0.2281 MIMAT0004849 mmu-miR-883a-3p 29864 Rnf11 uaugacucucGAC-AACGUCAAu ||| |||||||| gugcuauauuCUGUUUGCAGUUa 2 13 607 629 [mm9:4:109126227-109126249:-] 0.7477 151 7 -17.73 -1.1527 MIMAT0004851 mmu-miR-883b-3p 29864 Rnf11 uaugacucucuAC-AACGUCAAu || |||||||| gugcuauauucUGUUUGCAGUUa 2 12 607 629 [mm9:4:109126227-109126249:-] 0.7477 146 7 -14.12 -1.1527 MIMAT0004863 mmu-miR-220 29864 Rnf11 uucACAGACUGUGACAC-CACc |||:| | |:|||| ||| acaUGUUU-AAAUUGUGUGUGu 2 19 297 317 [mm9:4:109126539-109126559:-] 0.6875 124 0 -14.03 -1.0452 MIMAT0004871 mmu-miR-465b-5p 29864 Rnf11 gucUAGUCGUGGUAAGAUUUAu :| || | :| ||||||| aauGUAAG-AAUACUCUAAAUc 2 20 1206 1226 [mm9:4:109125630-109125650:-] 0.6498 149 7 -6.55 -0.5008 MIMAT0004871 mmu-miR-465b-5p 29864 Rnf11 gucuagucgugguaaGAUUUAu |||||| uaguuguuauuuuucCUAAAUg 2 8 336 357 [mm9:4:109126499-109126520:-] 0.6875 120 6 -8.07 -0.2728 MIMAT0004873 mmu-miR-465c-5p 29864 Rnf11 gucuagucgcgGUAAGAUUUAu :| ||||||| uaauguaagaaUACUCUAAAUc 2 12 1205 1226 [mm9:4:109125630-109125651:-] 0.6498 143 7 -6.55 -0.5077 MIMAT0004873 mmu-miR-465c-5p 29864 Rnf11 gucuagucgcgguaaGAUUUAu |||||| uaguuguuauuuuucCUAAAUg 2 8 336 357 [mm9:4:109126499-109126520:-] 0.6875 120 6 -10.43 -0.2728 MIMAT0004882 mmu-miR-466f-3p 29864 Rnf11 cacacauacacacaCACAUAc |||||| ggucuuuuuaaauaGUGUAUu 2 8 529 549 [mm9:4:109126307-109126327:-] 0.7629 120 6 -5.45 -0.2540 MIMAT0004884 mmu-miR-466h 29864 Rnf11 auguguGUUCGUGUACGUGUgu :||| |||||||| aggaauUAAGAUCAUGCACAaa 3 17 86 107 [mm9:4:109126749-109126770:-] 0.7702 140 0 -15.07 -0.2254 MIMAT0004884 mmu-miR-466h 29864 Rnf11 auguguguucguguACGUGUGu ||||||| aauguguuauguuuUGCACACc 2 9 1104 1125 [mm9:4:109125731-109125752:-] 0.6224 140 7 -11.13 -0.8259 MIMAT0004884 mmu-miR-466h 29864 Rnf11 auguguGUUCG--UGUACGUGUgu :|||| :: |||||| uaguuuUAAGCUUGUUUGCACAgu 3 17 469 492 [mm9:4:109126364-109126387:-] 0.7891 127 0 -11.74 -0.1685 MIMAT0004892 mmu-miR-568 29864 Rnf11 cacacauAUGU-AAAUA-UGUa |||| ||||| ||| uaaaagcUACAUUUUAUAACAc 2 14 425 446 [mm9:4:109126410-109126431:-] 0.6872 120 0 -5.21 -0.9529 MIMAT0004932 mmu-miR-878-5p 29864 Rnf11 acaGAACUGUAGGUUGA-UCUAu |||| | | |||| |||| uagCUUGUAAGCAAACUGAGAUg 2 20 657 679 [mm9:4:109126177-109126199:-] 0.6429 127 0 -13.11 -0.7100 MIMAT0004934 mmu-miR-872 29864 Rnf11 ggacuugauuguucAUUGGAa |||||| aaccaguuuauuuaUAACCUg 2 8 580 600 [mm9:4:109126256-109126276:-] 0.7477 120 6 -8.08 -0.1825 MIMAT0004935 mmu-miR-872* 29864 Rnf11 uccuccgaugacgUUAUCAAgu :|||||| agcuuaggaaaaaGAUAGUUgu 3 10 321 342 [mm9:4:109126514-109126535:-] 0.6875 121 0 -7.68 -0.1255 MIMAT0005291 mmu-miR-582-5p 29864 Rnf11 ucaUUGACCAACUUGUUGACAu || || | |:||||||| guaAAGUGUUACAGCAACUGUa 2 20 276 297 [mm9:4:109126559-109126580:-] 0.6875 159 7 -15.60 -0.8476 MIMAT0005830 mmu-miR-466l 29864 Rnf11 uuauacacacgUACAUAAAUAu :| ||||||| cuugaaaaccaGUUUAUUUAUa 2 12 574 595 [mm9:4:109126261-109126282:-] 0.7553 143 7 -5.15 -1.2182 MIMAT0005830 mmu-miR-466l 29864 Rnf11 uuauACACACGUACAUA-AAUAu ||||||: | ||| |||| uccuUGUGUGUCU-UAUCUUAUu 2 19 754 775 [mm9:4:109126081-109126102:-] 0.6429 128 0 -8.21 -0.8149 MIMAT0005835 mmu-miR-1-2-as 29864 Rnf11 accUUACA--UUUCUUCAUACAu :|||| |::||||||||| gcaGAUGUUGAGGGAAGUAUGUg 2 19 134 156 [mm9:4:109126700-109126722:-] 0.6884 165 7 -19.33 -0.8421 MIMAT0005839 mmu-miR-669f 29864 Rnf11 uaUGCACACACACAUAC-AUAUAc || ||| ||| :|| ||||| uaACCUGU-UGUAAGUGCUAUAUu 2 22 594 616 [mm9:4:109126240-109126262:-] 0.7477 127 0 -7.83 -0.8943 MIMAT0005839 mmu-miR-669f 29864 Rnf11 uaUGC-ACACAC-ACAUACA-UAUAc |:| || | | |||||| |||| agAUGUUGAGGGAAGUAUGUGAUAUu 2 22 136 161 [mm9:4:109126695-109126720:-] 0.6884 123 0 -11.34 -1.0555 MIMAT0005841 mmu-miR-669h-5p 29864 Rnf11 cgugagUUGAUAUGUGGGUACGUa ||:|| | | :|||||| auuaggAAUUA-AGA-UCAUGCAc 2 19 83 104 [mm9:4:109126752-109126773:-] 0.7702 134 6 -10.16 -0.1785 MIMAT0005846 mmu-miR-467f 29864 Rnf11 acAUCCACACACA-----CACAUAua ||||| | | | |||||| cuUAGGUCUUUUUAAAUAGUGUAUua 3 20 525 550 [mm9:4:109126306-109126331:-] 0.7629 126 0 -8.03 -0.3339 MIMAT0005848 mmu-miR-466j 29864 Rnf11 aaUGUGUGUAC-GUGU---ACGUGUGu :|| |::|| :|:: ||||||| agGCAAAUGUGUUAUGUUUUGCACACc 2 22 1099 1125 [mm9:4:109125731-109125757:-] 0.6224 147 7 -14.36 -0.8187 MIMAT0005848 mmu-miR-466j 29864 Rnf11 aauguguGUACGUGUACGUGUgu :| | |||||||| uaggaauUAAGAUCAUGCACAaa 3 17 85 107 [mm9:4:109126749-109126771:-] 0.7702 132 0 -12.31 -0.2274 MIMAT0005848 mmu-miR-466j 29864 Rnf11 aauGUGUGUACGUGUACGUGUgu :| :| || : |||||| uuuUAAGCUUG--UUUGCACAgu 3 21 472 492 [mm9:4:109126364-109126384:-] 0.7891 121 0 -8.86 -0.1653 MIMAT0005851 mmu-miR-1193 29864 Rnf11 cuaucauuuugccCACUGGAu ||||||| gauucucuuuccuGUGACCUc 2 9 937 957 [mm9:4:109125899-109125919:-] 0.6384 140 7 -11.54 -0.7377 MIMAT0005859 mmu-miR-1198 29864 Rnf11 ggUUCGGUCGGUCCUUGUGUAu |||::| ||| ||||||| ugAAGUUA--CAGAAACACAUc 2 21 1025 1044 [mm9:4:109125812-109125831:-] 0.6384 161 7 -14.75 -0.4761 MIMAT0007874 mmu-miR-1904 29864 Rnf11 ggagggagguCUCCUCGUCUUg || |||||||| guuaaaaaauGAUGAGCAGAAg 2 13 1352 1373 [mm9:4:109125483-109125504:-] 0.6003 152 7 -13.60 -0.2188 MIMAT0007875 mmu-miR-1898 29864 Rnf11 cuAGGGGACACUU-GGAACUGGa |::: ||| || |||||||| auUUUUAUGUAAAGCCUUGACCc 2 21 195 217 [mm9:4:109126639-109126661:-] 0.7445 163 7 -19.06 -0.8206 MIMAT0009392 mmu-miR-1929 29864 Rnf11 gaGACGAGAUAUUUCAGGAUCUu ||| | |:| ||||||| auCUGGUGUGU---UUCCUAGAa 2 22 1042 1061 [mm9:4:109125795-109125814:-] 0.6384 145 7 -19.01 -1.0399 MIMAT0009394 mmu-miR-1931 29864 Rnf11 cgguagcGUGGUCGGGAACGUa :|:: ::|||||| ucuccuuUAUUUUUUCUUGCAa 2 16 1182 1203 [mm9:4:109125653-109125674:-] 0.6224 127 6 -12.91 -0.2118 MIMAT0009396 mmu-miR-1933-5p 29864 Rnf11 uuUGAUUCUGGCUUGUGGUAC-UGa |:||:|| : || |:|||| || ggAUUAGGAAUUAAGAUCAUGCACa 2 23 81 105 [mm9:4:109126751-109126775:-] 0.7702 122 0 -16.77 -0.4051 MIMAT0009402 mmu-miR-1938 29864 Rnf11 cuggcUUGAUGUUCAGGGUGGc |::| | ||||||| aaauaAGUUUCUUCUCCCACCc 2 18 358 379 [mm9:4:109126477-109126498:-] 0.6873 145 7 -14.07 -0.9714 MIMAT0009405 mmu-miR-1941-5p 29864 Rnf11 uucggagacauggucguAGAGGGa |||||| aaaugaaauaaguuucuUCUCCCa 2 8 353 376 [mm9:4:109126480-109126503:-] 0.6873 120 6 -15.98 -0.1209 MIMAT0009407 mmu-miR-1942 29864 Rnf11 guugGUCUACUUCUGUAGACu |||| || ||||||| guuaCAGA--AACACAUCUGg 2 18 1029 1047 [mm9:4:109125809-109125827:-] 0.6384 154 7 -15.38 -0.4736 MIMAT0009409 mmu-miR-1944 29864 Rnf11 uuAGUCUUGAACUGUAAGUCGUGUCuc |:| |:|||| ||: |||||| uuUUA-AGCUUG---UUU-GCACAGuu 3 26 472 493 [mm9:4:109126363-109126384:-] 0.7891 133 0 -14.77 -0.1745 MIMAT0009417 mmu-miR-1950 29864 Rnf11 acugguauaggaaucUACGUCu |||||| guuugcaguuaggaaAUGCAGa 2 8 619 640 [mm9:4:109126216-109126237:-] 0.7477 120 6 -11.41 -0.2017 MIMAT0009421 mmu-miR-669o 29864 Rnf11 ugUAUUUGUACGUGUGU-GUUGAu :|||| :||: :||| ||||| guGUAAA-GUGU-UACAGCAACUg 2 22 274 295 [mm9:4:109126561-109126582:-] 0.6875 125 0 -14.17 -0.9826 MIMAT0009424 mmu-miR-1953 29864 Rnf11 gucuucGGACUCU--UGAAAGGGu |||| || ||||||| cucuuuCCUGUGACCUCUUUCCCc 2 17 941 964 [mm9:4:109125892-109125915:-] 0.6384 151 7 -19.16 -0.4427 MIMAT0009426 mmu-miR-1955 29864 Rnf11 uuUUCGACGUCACGUA--G-GACCCUGa ||||| || | :|| | |||| || aaAAGCUACAUUUUAUAACACUGGCACa 2 24 426 453 [mm9:4:109126403-109126430:-] 0.6872 133 0 -14.89 -0.1044 MIMAT0009427 mmu-miR-669n 29864 Rnf11 ugugUGUAGGUGUGUGUUUa | || ||::|||||| auuaAGAU-CAUGCACAAAa 2 17 90 108 [mm9:4:109126748-109126766:-] 0.7702 138 6 -10.46 -0.2370 MIMAT0009427 mmu-miR-669n 29864 Rnf11 uguGUGUAG-GUGUGUGUUUa :|:| | | :|||||| uuuUAUAACACUGGCACAAAa 2 18 436 456 [mm9:4:109126400-109126420:-] 0.6872 128 6 -9.19 -0.3367 MIMAT0009431 mmu-miR-1958 29864 Rnf11 ugaAUGACGAAGGUGAAAGGAu | :|| |||: ||||||| cagUUUUGAUUCU-CUUUCCUg 2 20 930 950 [mm9:4:109125906-109125926:-] 0.6384 157 7 -15.67 -0.6204 MIMAT0009431 mmu-miR-1958 29864 Rnf11 ugaauGACGAAGGUGAAAGGAu :|| | :| ||||||| uggauUUGAUAUCCCUUUCCUu 2 18 737 758 [mm9:4:109126098-109126119:-] 0.6429 153 7 -16.01 -0.4214 MIMAT0009431 mmu-miR-1958 29864 Rnf11 ugAAU-G-ACGAAGGUGAAAGGAu ||| | ||: |::|:|||||| auUUAGCAUGUGUUUAUUUUCCUu 2 21 1285 1308 [mm9:4:109125548-109125571:-] 0.6773 146 6 -15.26 -0.1259 MIMAT0009431 mmu-miR-1958 29864 Rnf11 ugaaUGACGAAGGU-GAAAGGAu |: |:| ::| :|||||| aaagAUAGUUGUUAUUUUUCCUa 2 19 331 353 [mm9:4:109126503-109126525:-] 0.6875 133 6 -12.64 -0.2237 MIMAT0009431 mmu-miR-1958 29864 Rnf11 ugaaugacgaaggugAAAGGAu |||||| gaucaugcacaaaagUUUCCUa 2 8 95 116 [mm9:4:109126740-109126761:-] 0.7702 120 6 -10.74 -0.2593 MIMAT0009432 mmu-miR-1959 29864 Rnf11 gaggUGACUCGA--UG-UAGGGg |||||| | || ||||| gcaaACUGAGAUGCACUAUCCCu 2 17 667 689 [mm9:4:109126167-109126189:-] 0.6429 123 0 -18.71 -0.8909 MIMAT0009442 mmu-miR-1969 29864 Rnf11 ugggUACAAUUUCAGAG-GUAGAa | | | |||:|| ||||| cuuaAAGAAACAGUUUCUCAUCUg 2 20 903 926 [mm9:4:109125930-109125953:-] 0.6384 123 0 -12.30 -0.9797 MIMAT0009455 mmu-miR-1983 29864 Rnf11 ucuuuUGUACGAGGUCCACUc |::| |||||||||| uccuuAUGUUCUCCAGGUGAu 2 17 1304 1324 [mm9:4:109125532-109125552:-] 0.6773 164 7 -20.20 -0.7618 MIMAT0009457 mmu-miR-1839-3p 29864 Rnf11 cgacaaccaucuauucAUCCAGa |||||| auggaauucauugccuUAGGUCu 2 8 511 533 [mm9:4:109126323-109126345:-] 0.7629 120 6 -10.16 -0.1582 MIMAT0011212 mmu-miR-2136 29864 Rnf11 guguagagucaguuGUGGGUc |||||| uaaguuucuucuccCACCCAa 2 8 361 381 [mm9:4:109126475-109126495:-] 0.6873 120 6 -13.08 -0.2256 MIMAT0011222 mmu-miR-2146 29864 Rnf11 guguaccuugggAAGAGGUg ||||||| auuuuccuuaugUUCUCCAg 2 9 1300 1319 [mm9:4:109125537-109125556:-] 0.6773 140 7 -11.28 -0.6328 MIMAT0012772 mmu-miR-599 29864 Rnf11 caAACUAUU-UGACUGUGUu || |||| ||||:|||| auUUUAUAACACUGGCACAa 2 18 435 454 [mm9:4:109126402-109126421:-] 0.6872 152 0 -16.36 -0.1297 MIMAT0012773 mmu-miR-767 29864 Rnf11 acgaguCUGUUGGUACCACgu |:: | :|||||| uuugguGGUUAAUAUGGUGau 3 16 778 798 [mm9:4:109126058-109126078:-] 0.6429 127 0 -11.44 -0.1051 MIMAT0012774 mmu-miR-664 29864 Rnf11 auccgaccccucAUUUACUUau |||||||| uguuauuuuuccUAAAUGAAau 3 11 340 361 [mm9:4:109126495-109126516:-] 0.6875 130 0 -4.46 -0.1093 MIMAT0014853 mmu-miR-3072 29864 Rnf11 ucuuccgaaggaccUCCCCCgu |||||| uauuuuagaaauuuAGGGGGaa 3 9 158 179 [mm9:4:109126677-109126698:-] 0.6884 120 0 -13.60 -0.2581 MIMAT0015640 mmu-miR-3470a 29864 Rnf11 ggucggacCAGAU-GUUUCACu | ||| ||||||| ggaaacaaGGCUAGCAAAGUGg 2 14 718 739 [mm9:4:109126117-109126138:-] 0.6429 148 7 -16.57 -0.5303 MIMAT0015642 mmu-miR-3471 29864 Rnf11 uuACGGAA-UGUCAAC-CUAGAGu || ||| |:||||| |||||| caUGACUUCAUAGUUGUGAUCUCa 2 21 1150 1173 [mm9:4:109125683-109125706:-] 0.6224 143 6 -24.12 -0.9357 MIMAT0000128 mmu-miR-30a 29864 Rnf11 gaaggucagcuccUACAAAUgu :|||||| aagccuugacccaGUGUUUAaa 3 10 206 227 [mm9:4:109126629-109126650:-] 0.8006 121 0 -8.37 -0.2717 MIMAT0000130 mmu-miR-30b 29864 Rnf11 ucgacucacauccUACAAAUgu :|||||| aagccuugacccaGUGUUUAaa 3 10 206 227 [mm9:4:109126629-109126650:-] 0.8006 121 0 -6.11 -0.2693 MIMAT0000134 mmu-miR-124 29864 Rnf11 ccguaaguggcgcACGGAAu |||||| aaauggaauucauUGCCUUa 2 8 509 528 [mm9:4:109126328-109126347:-] 0.7629 120 6 -15.43 -0.1310 MIMAT0000141 mmu-miR-130a 29864 Rnf11 uacgggAAAAUU-G---UAACGUGac |||||| | |||||| uaguagUUUUAAGCUUGUUUGCACag 3 17 466 491 [mm9:4:109126365-109126390:-] 0.7381 126 0 -10.21 -0.1502 MIMAT0000141 mmu-miR-130a 29864 Rnf11 uacggGAAAAUUGUA-ACGUGAc || | ||: | |||||| gaauaCUCUAAAUCUCUGCACUu 2 18 1213 1235 [mm9:4:109125621-109125643:-] 0.6498 121 6 -12.01 -0.8207 MIMAT0000150 mmu-miR-138 29864 Rnf11 gccGGACUAAGUGUUGUGGU-CGa ::||| |:|:: ||||| || agcUUUGAAUUAUGCCACCAUGCu 2 21 847 870 [mm9:4:109125986-109126009:-] 0.6407 128 0 -18.73 -0.7701 MIMAT0000153 mmu-miR-141 29864 Rnf11 gguaGAAAUGGUCUGUCACAAu ||| ||| ||||||| aagcCUUGACC---CAGUGUUu 2 19 206 224 [mm9:4:109126632-109126650:-] 0.8006 150 7 -13.87 -1.1014 MIMAT0000159 mmu-miR-149 29864 Rnf11 cccUCACUUCUGUGCCUCGGUCu | |||: || ||||||| gucACUGAGCCCAAAGAGCCAGg 2 21 59 81 [mm9:4:109126775-109126797:-] 0.7702 156 7 -19.28 -0.9508 MIMAT0000164 mmu-miR-154 29864 Rnf11 gcUUCCGUU--GUGCCUAUUGGAu || ||: :|: ||||||| gaAAACCAGUUUAUUUAUAACCUg 2 21 577 600 [mm9:4:109126256-109126279:-] 0.7553 143 7 -10.50 -1.1708 MIMAT0000209 mmu-miR-129-5p 29864 Rnf11 cguucgggucuggcGUUUUUc |||||| uuauaacacuggcaCAAAAAa 2 8 438 458 [mm9:4:109126398-109126418:-] 0.6872 120 6 -6.80 -0.1718 MIMAT0000214 mmu-miR-185 29864 Rnf11 agUCCUUGACGGAAAG-AGAGGu | ||| | |||| ||||| aaAUGAAAUAAGUUUCUUCUCCc 2 21 353 375 [mm9:4:109126481-109126503:-] 0.6875 124 0 -11.33 -1.1270 MIMAT0000215 mmu-miR-186 29864 Rnf11 ucggguuuuccucUUAAGAAAc |||||||| cuucucccacccaAAUUCUUUu 2 10 368 389 [mm9:4:109126467-109126488:-] 0.6873 145 7 -10.54 -0.9577 MIMAT0000215 mmu-miR-186 29864 Rnf11 ucggguuuuCCUCUUAAGAAAc | | |:|||||| agcuuguuuGCACAGUUCUUUu 2 14 477 498 [mm9:4:109126358-109126379:-] 0.7760 133 6 -9.29 -0.1579 MIMAT0000219 mmu-miR-24 29864 Rnf11 gaCAAGGACGAC-UUGACUCGGu | ||:| :|| |||||||| uuGAUCUU-UUGUCACUGAGCCc 2 21 49 70 [mm9:4:109126786-109126807:-] 0.7702 153 7 -20.09 -0.8714 MIMAT0000229 mmu-miR-199a-5p 29864 Rnf11 cuUGUCCA--UCAGA-CUUGUGACCc | || | | |:| |||||||| uaAAAGCUACAUUUUAUAACACUGGc 2 22 425 450 [mm9:4:109126406-109126431:-] 0.6872 147 7 -12.60 -1.2517 MIMAT0000237 mmu-miR-204 29864 Rnf11 uccGUAUCCUACUGUUUC-CCUu || ||| | :||||| ||| aaaCA-AGGCUAGCAAAGUGGAu 2 20 720 741 [mm9:4:109126115-109126136:-] 0.6429 125 0 -15.27 -0.5571 MIMAT0000238 mmu-miR-205 29864 Rnf11 gucugaggccaccuuACUUCCu |||||| aaaucucugcacuucUGAAGGa 2 8 1222 1243 [mm9:4:109125613-109125634:-] 0.6498 120 6 -16.69 -0.1091 MIMAT0000248 mmu-miR-30e 29864 Rnf11 gaaggucaguuccUACAAAUgu :|||||| aagccuugacccaGUGUUUAaa 3 10 206 227 [mm9:4:109126629-109126650:-] 0.8006 121 0 -7.68 -0.2693 MIMAT0000379 mmu-miR-301a 29864 Rnf11 cgAAACUGUUAUGAUAACGUGac ||| | : | | |||||| agUUUUAAGCUUGU-UUGCACag 3 22 470 491 [mm9:4:109126365-109126386:-] 0.7891 127 0 -9.13 -0.1842 MIMAT0000381 mmu-miR-34c 29864 Rnf11 cguuaGUCGAUUGAUGUGACGGa || :| |: |||||| | agcuaCAUUUUAUAACACUGGCa 2 19 429 451 [mm9:4:109126405-109126427:-] 0.6872 126 0 -12.18 -0.2312 MIMAT0000382 mmu-miR-34b-5p 29864 Rnf11 uguuaGUCGAUUAAUGUGACGGa || :| || |||||| | agcuaCAUUUUAUAACACUGGCa 2 19 429 451 [mm9:4:109126405-109126427:-] 0.6872 130 0 -11.97 -0.2312 MIMAT0000387 mmu-miR-130b 29864 Rnf11 uacggGAAAGU--AGU-AACGUGac :||| | |:: |||||| aguagUUUUAAGCUUGUUUGCACag 3 18 467 491 [mm9:4:109126365-109126389:-] 0.7891 123 0 -9.39 -0.1981 MIMAT0000387 mmu-miR-130b 29864 Rnf11 uacggGAAAGUAG-UAAC-GUGAc :||| ||| ||| |||| gguggUUUUGAUCUUUUGUCACUg 2 18 42 65 [mm9:4:109126791-109126814:-] 0.6804 120 0 -16.26 -0.5405 MIMAT0000513 mmu-miR-19b 29864 Rnf11 agUCAAAA--CGUACCUAAACGUGu |||||| || || ||||||| guAGUUUUAAGCUUG--UUUGCACa 2 22 468 490 [mm9:4:109126366-109126388:-] 0.7891 161 7 -17.16 -1.2144 MIMAT0000513 mmu-miR-19b 29864 Rnf11 agUCAAAACGUACCUAAACGUGu | | | :|| | ||||||| caAAUGUGUUAU-GUUUUGCACa 2 22 1102 1123 [mm9:4:109125733-109125754:-] 0.6224 147 7 -13.51 -0.6549 MIMAT0000513 mmu-miR-19b 29864 Rnf11 agUCAAAACGUACCUAAAC-GUGu :|||||| || |||| ||| guGGUUUUG-AU-CUUUUGUCACu 2 22 43 64 [mm9:4:109126792-109126813:-] 0.6804 121 0 -11.00 -0.4377 MIMAT0000514 mmu-miR-30c 29864 Rnf11 cgacucucacauccUACAAAUgu :|||||| aaagccuugacccaGUGUUUAaa 3 10 205 227 [mm9:4:109126629-109126651:-] 0.8006 121 0 -5.76 -0.2693 MIMAT0000515 mmu-miR-30d 29864 Rnf11 gaaggucagccccUACAAAUgu :|||||| aagccuugacccaGUGUUUAaa 3 10 206 227 [mm9:4:109126629-109126650:-] 0.8006 121 0 -7.68 -0.2717 MIMAT0000517 mmu-miR-192 29864 Rnf11 ccgacAGUUA-AGUAUCCAGuc ||| | | |||||| ggaauUCAUUGCCUUAGGUCuu 3 17 513 534 [mm9:4:109126322-109126343:-] 0.7629 127 0 -11.07 -0.1878 MIMAT0000519 mmu-miR-200a 29864 Rnf11 ugUAGCAA-UGGUCUGUCACAAu | | || ||| ||||||| aaAGCCUUGACC---CAGUGUUu 2 21 205 224 [mm9:4:109126632-109126651:-] 0.8006 143 7 -11.76 -1.1037 MIMAT0000530 mmu-miR-21 29864 Rnf11 agUUGUAGUCAGACUAUUCGAu ||:| :|||: |||||| aaAAUAGUAGUU--UUAAGCUu 2 21 462 481 [mm9:4:109126375-109126394:-] 0.7381 125 6 -12.60 -0.1129 MIMAT0000538 mmu-miR-31 29864 Rnf11 gucgauacggucguAGAACGga |||||| ucuccuuuauuuuuUCUUGCaa 3 9 1182 1203 [mm9:4:109125653-109125674:-] 0.6224 120 0 -8.32 -0.1806 MIMAT0000539 mmu-miR-92a 29864 Rnf11 guccggcccuguucACGUUAu |||||| ccuuuauuuuuucuUGCAAUu 2 8 1185 1205 [mm9:4:109125651-109125671:-] 0.6224 120 6 -4.62 -0.1618 MIMAT0000567 mmu-miR-329 29864 Rnf11 uuuuuccaaUCGACCCACACAa | || ||||||| cagaaacacAUCU-GGUGUGUu 2 14 1033 1053 [mm9:4:109125803-109125823:-] 0.6384 143 7 -13.70 -0.6793 MIMAT0004651 mmu-miR-340-5p 29864 Rnf11 uuagucagaguaacGAAAUAUu :|||||| uauuaaaagcuacaUUUUAUAa 2 9 422 443 [mm9:4:109126413-109126434:-] 0.6872 124 6 -5.31 -0.1331 MIMAT0004651 mmu-miR-340-5p 29864 Rnf11 uuagucagaguaacgAAAUAUu |||||| uugaaaaccaguuuaUUUAUAa 2 8 575 596 [mm9:4:109126260-109126281:-] 0.7553 120 6 -9.31 -0.1057 MIMAT0000616 mmu-miR-101b 29864 Rnf11 aagucGAUAGUGUCAU-GACAu ||| | |||| |||| guuucCUAGAAAAGUACCUGUu 2 17 1051 1072 [mm9:4:109125784-109125805:-] 0.6384 120 0 -10.85 -0.4957 MIMAT0000651 mmu-miR-19a 29864 Rnf11 agUCAAAACGUAUCUAAACGUGu |||||| : :||||||| guAGUUUUAAGCUUGUUUGCACa 2 22 468 490 [mm9:4:109126366-109126388:-] 0.7891 157 7 -17.16 -1.2256 MIMAT0000651 mmu-miR-19a 29864 Rnf11 agucaAAACGUAU-CUAAACGUGu | ||: || | ||||||| gcaaaUGUGU-UAUGUUUUGCACa 2 19 1101 1123 [mm9:4:109125733-109125755:-] 0.6224 147 7 -13.52 -0.6549 MIMAT0000651 mmu-miR-19a 29864 Rnf11 agUCAAAACGUAUCUAAAC-GUGu :|||||| || |||| ||| guGGUUUUG-AU-CUUUUGUCACu 2 22 43 64 [mm9:4:109126792-109126813:-] 0.6804 121 0 -11.00 -0.4377 MIMAT0000652 mmu-miR-25 29864 Rnf11 agucuggcucuguucACGUUAc |||||| uccuuuauuuuuucuUGCAAUu 2 8 1184 1205 [mm9:4:109125651-109125672:-] 0.6224 120 6 -3.72 -0.1618 MIMAT0000654 mmu-miR-32 29864 Rnf11 acguugaaucauuacACGUUAu |||||| uccuuuauuuuuucuUGCAAUu 2 8 1184 1205 [mm9:4:109125651-109125672:-] 0.6224 120 6 -4.62 -0.1542 MIMAT0000656 mmu-miR-139-5p 29864 Rnf11 gaccucuGUGCAC-GUGACAUCu | | || :||||||| acugcauCUCUUGUUACUGUAGu 2 16 991 1013 [mm9:4:109125843-109125865:-] 0.6384 146 7 -16.83 -0.7376 MIMAT0000665 mmu-miR-223 29864 Rnf11 accccauaaacuguuUGACUGu |||||| cuuuucugaaaaguuACUGACa 2 8 385 406 [mm9:4:109126450-109126471:-] 0.6872 120 6 -10.68 -0.2009 MIMAT0000666 mmu-miR-320 29864 Rnf11 agcgggagaguugggUCGAAAa |||||| auuucugauuuguugAGCUUUg 2 8 832 853 [mm9:4:109126003-109126024:-] 0.6429 120 6 -9.92 -0.2517 MIMAT0000667 mmu-miR-33 29864 Rnf11 acguuACGUUGAUGUUACGUg ||| || ||||||| uguuuUGC-ACACCAAUGCAg 2 17 1113 1132 [mm9:4:109125724-109125743:-] 0.6224 150 7 -13.87 -0.1932 MIMAT0000668 mmu-miR-211 29864 Rnf11 uccguUUCCUACUGUUUC-CCUu |||| | :||||| ||| gaaacAAGGCUAGCAAAGUGGAu 2 18 719 741 [mm9:4:109126115-109126137:-] 0.6429 129 0 -14.43 -0.5535 MIMAT0004684 mmu-miR-362-3p 29864 Rnf11 acuuaggaacUUGUCCACACAa | | ||||||| acagaaacacAUCUGGUGUGUu 2 13 1032 1053 [mm9:4:109125803-109125824:-] 0.6384 144 7 -14.18 -0.7007 MIMAT0004684 mmu-miR-362-3p 29864 Rnf11 acuUAGGAACUUGUC-CACACAa || :|| ||: | |||||| uacAUGUUUAAAUUGUGUGUGUu 2 20 296 318 [mm9:4:109126538-109126560:-] 0.6875 127 6 -11.11 -0.8893 MIMAT0000708 mmu-miR-363 29864 Rnf11 augucuaccuauggcACGUUAa |||||| uccuuuauuuuuucuUGCAAUu 2 8 1184 1205 [mm9:4:109125651-109125672:-] 0.6224 120 6 -6.56 -0.1557 MIMAT0000904 mmu-miR-215 29864 Rnf11 cagacAGU-UUAGUAUCCAGua ||| : | |||||| ggaauUCAUUGCCUUAGGUCuu 3 17 513 534 [mm9:4:109126322-109126343:-] 0.7629 123 0 -8.75 -0.1896 MIMAT0004745 mmu-miR-384-5p 29864 Rnf11 uguaaCGGA--UCCUUAACAAAUgu |||| | | |||||| guaaaGCCUUGACCCAGUGUUUAaa 3 19 203 227 [mm9:4:109126629-109126653:-] 0.7445 125 0 -10.31 -0.2056 MIMAT0001076 mmu-miR-384-3p 29864 Rnf11 uaACAC-UUGUUAAAGAUCCUUa |||| : ::| :|||||| ugUGUGUGUUGAAGCUUAGGAAa 2 21 309 331 [mm9:4:109126525-109126547:-] 0.6875 131 6 -11.46 -0.1430 MIMAT0001095 mmu-miR-370 29864 Rnf11 ugguccaaGGUGGGGUCGUCCg ||| : ||||||| uuugcacaCCAAUGCAGCAGGg 2 15 1116 1137 [mm9:4:109125719-109125740:-] 0.6224 150 7 -20.07 -0.3492 MIMAT0001420 mmu-miR-433 29864 Rnf11 uguggcUCCUCGG--GUAGUACua |||| :: |||||| gggauuAGGAAUUAAGAUCAUGca 3 17 80 103 [mm9:4:109126753-109126776:-] 0.7702 123 0 -12.04 -0.1185 MIMAT0001542 mmu-miR-449a 29864 Rnf11 ugGUCGAUUGUUAUGUGACGGu || :| |:| |||||| | uaCAUUUUAUA--ACACUGGCa 2 21 432 451 [mm9:4:109126405-109126424:-] 0.6872 121 0 -12.90 -0.2312 MIMAT0003168 mmu-miR-543 29864 Rnf11 uucuucacguggcgcUUACAAa |||||| ggucuaguaaaguguAAUGUUu 2 8 1258 1279 [mm9:4:109125577-109125598:-] 0.6773 120 6 -11.91 -0.1154 MIMAT0003169 mmu-miR-539 29864 Rnf11 uguguGGUUCCUA--U-UAAAGAgg :||| || | |||||| gaaauUCAAAUAUUAAUAUUUCUga 3 18 815 839 [mm9:4:109126017-109126041:-] 0.6429 123 0 -5.65 -0.3185 MIMAT0003172 mmu-miR-542-3p 29864 Rnf11 aaagucAAUAGUUAGACAGUGu |||| | ||| ||| uacauuUUAUAACACUGGCACa 2 17 432 453 [mm9:4:109126403-109126424:-] 0.6872 124 0 -9.98 -0.1697 MIMAT0003181 mmu-miR-367 29864 Rnf11 agugguaacgauuucACGUUAa |||||| uccuuuauuuuuucuUGCAAUu 2 8 1184 1205 [mm9:4:109125651-109125672:-] 0.6224 120 6 -7.43 -0.1527 MIMAT0003182 mmu-miR-494 29864 Rnf11 cuccaaagggCACA-UACAAAGu |||| ||||||: gucuaguaaaGUGUAAUGUUUUa 2 13 1259 1281 [mm9:4:109125575-109125597:-] 0.6773 135 0 -11.64 -0.2106 MIMAT0003182 mmu-miR-494 29864 Rnf11 cuccAAAGGGCACAUACAA-AGu |||:|| | |||||| || uuuaUUUUCC-U-UAUGUUCUCc 2 19 1297 1317 [mm9:4:109125539-109125559:-] 0.6773 122 0 -8.78 -0.8850 MIMAT0004186 mmu-miR-301b 29864 Rnf11 cgAAACUGUUAUGGUAACGUGac ||| | |: : |||||| agUUUUA-AGCUUGUUUGCACag 3 22 470 491 [mm9:4:109126365-109126386:-] 0.7891 123 0 -10.18 -0.1981 MIMAT0003730 mmu-miR-592 29864 Rnf11 uguaGUAGCGUA---UAACUGUGUUa |||: :|| | ||:||||| gcuaCAUUUUAUAACACUGGCACAAa 2 20 430 455 [mm9:4:109126401-109126426:-] 0.6872 138 0 -13.48 -0.1461 MIMAT0003890 mmu-miR-551b 29864 Rnf11 gacuuUGGUU-CAUACCCAGcg ||::| | |||||| aaguuACUGACAUUUGGGUCaa 3 17 395 416 [mm9:4:109126440-109126461:-] 0.6872 127 0 -13.87 -0.1055 MIMAT0003738 mmu-miR-496 29864 Rnf11 cucuaaccggUACA---UUAUGAGu |||| ||||||| cuugcaauuaAUGUAAGAAUACUCu 2 13 1197 1221 [mm9:4:109125635-109125659:-] 0.6224 143 7 -10.27 -0.9182 MIMAT0003450 mmu-miR-488 29864 Rnf11 cuGGUUCUUUGUC--GGA-AAGUu || ||||| || ||| |||| uuCCUAGAAA-AGUACCUGUUCAg 2 20 1053 1075 [mm9:4:109125781-109125803:-] 0.6384 124 0 -14.36 -0.4184 MIMAT0003475 mmu-miR-146b 29864 Rnf11 ucGGAUACCUUAAGUC-AAGAGu |:|| ||| ||| ||||| aaCUUAAAGAA-ACAGUUUCUCa 2 21 901 922 [mm9:4:109125934-109125955:-] 0.6384 122 0 -14.97 -0.9523 MIMAT0003486 mmu-miR-491 29864 Rnf11 ggaguaccuucccAAGGGGUGa |||||||| uccugugaccucuUUCCCCACu 2 10 946 967 [mm9:4:109125889-109125910:-] 0.6384 145 7 -21.45 -0.7473 MIMAT0003513 mmu-miR-505 29864 Rnf11 ucUUUUGGUCGUU-CACAACUgc || |:: ::| |||||| uuAAUAUUUCUGAUUUGUUGAgc 3 21 827 849 [mm9:4:109126007-109126029:-] 0.6429 123 0 -6.81 -0.1243 MIMAT0003515 mmu-miR-721 29864 Rnf11 aagggggaaAAUUAACGUGac ||: |||||| guuuuaagcUUGUUUGCACag 3 13 471 491 [mm9:4:109126365-109126385:-] 0.7891 128 0 -9.16 -0.1944 MIMAT0003780 mmu-miR-490 29864 Rnf11 gucguaccuCAGGAGGUCCAac ||:|||||||| uuuccuuauGUUCUCCAGGUga 3 14 1302 1323 [mm9:4:109125533-109125554:-] 0.6773 141 0 -20.85 -0.1277 MIMAT0004869 mmu-miR-421 29864 Rnf11 cgCGGGUUAAUUACAGACAACUa |:::|| | :||| |||||| auGUUUAAAUUGUGUGUGUUGAa 2 22 299 321 [mm9:4:109126535-109126557:-] 0.6875 141 6 -17.41 -0.1184 MIMAT0004869 mmu-miR-421 29864 Rnf11 cgCGGGUUAAUUACAGACAACua |:::| ||| |||||| caGUUUAUUUAUAACCUGUUGua 3 22 583 605 [mm9:4:109126251-109126273:-] 0.7477 133 0 -10.92 -0.1294 MIMAT0004889 mmu-miR-504 29864 Rnf11 cuaucucacgucUGGUCCCAGa :|||||||| ------------GCCAGGGUCu 2 11 1 10 [mm9:4:109126846-109126855:-] 0.7013 146 7 -19.20 -0.4779 MIMAT0004895 mmu-miR-590-5p 29864 Rnf11 gacgugaaaauacuuAUUCGAg |||||| aaaaaauaguaguuuUAAGCUu 2 8 460 481 [mm9:4:109126375-109126396:-] 0.7381 120 6 -7.44 -0.1231 MIMAT0004899 mmu-miR-92b 29864 Rnf11 ccuccggcccugcucACGUUAu |||||| uccuuuauuuuuucuUGCAAUu 2 8 1184 1205 [mm9:4:109125651-109125672:-] 0.6224 120 6 -4.76 -0.1618 MIMAT0005447 mmu-miR-449b 29864 Rnf11 cgGUCGAUUGUUGUGACGGa || :| |:||||||| | uaCAUUUUAUAACACUGGCa 2 19 432 451 [mm9:4:109126405-109126424:-] 0.6872 134 0 -15.08 -0.2312 MIMAT0004937 mmu-miR-875-5p 29864 Rnf11 guGGACUAUUUUGA-CUCCAUau :|||| |::|:| |||||| cuUCUGA-AGGAUUAGAGGUAga 3 21 1233 1254 [mm9:4:109125602-109125623:-] 0.6773 141 0 -17.43 -0.1364 MIMAT0004937 mmu-miR-875-5p 29864 Rnf11 gugGACUAUUUUGACUCC-AUAu ||| ||: :|||||| ||| uuaCUG-UAGUGCUGAGGUUAUu 2 20 1004 1025 [mm9:4:109125831-109125852:-] 0.6384 129 0 -18.37 -0.5001 MIMAT0004937 mmu-miR-875-5p 29864 Rnf11 guggacUAUUUUGACU-CCAUAu :||::|: || ||||| gggaaaGUAGGAUGGAUGGUAUu 2 17 175 197 [mm9:4:109126659-109126681:-] 0.6884 120 0 -10.45 -0.9219 MIMAT0004941 mmu-miR-544 29864 Rnf11 cuCGAACG---AU-UUUUACGUCUUa |:|||| || :|||||||||| cuGUUUGCAGUUAGGAAAUGCAGAAu 2 21 617 642 [mm9:4:109126214-109126239:-] 0.6953 166 7 -19.77 -1.0051

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055914 Rnf11 Mus musculus 29864

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf11 mmu-miR-501-5p beg:972 end:991 pic:3' AAAGTGG-GTCCCTGTTTCCTAA 5'& ||| .|| ||||||| &5' ----ACCATAGCA--AAAGGAT- 3' Rnf11 mghv-miR-M1-9 beg:1091 end:1110 pic:3' TTTTTCCAGGTCCGTTTACACT 5'& ||| ||||||||||| &5' ----AGGAG-AGGCAAATGTG- 3' Rnf11 mmu-miR-1198 beg:1025 end:1043 pic:3' GGTTCGGTCGGTCCTTGTGTAT 5'& |||..| ||| ||||||| &5' --AAGTTA--CAGAAACACAT- 3' Rnf11 mmu-miR-20astar beg:1115 end:1133 pic:3' GAAATTCACGAGCA-TTACGTCA 5'& ||| | ||||||| &5' -------TGCACACCAATGCAG- 3' Rnf11 mmu-miR-20astar beg:623 end:640 pic:3' GAAATTCACGAG-CATTACGTCA 5'& |.| | ||||||| &5' --------GTTAGGAAATGCAG- 3' Rnf11 mmu-miR-199bstar beg:434 end:450 pic:3' CTTGTCCATCAGAT-TTGTGACCC 5'& |.|| |||||||| &5' ----------TTTATAACACTGG- 3' Rnf11 mmu-miR-338-5p beg:1332 end:1351 pic:3' GTGAGTCGTGGTCCTATAACAA 5'& |||||||. |||||||| &5' CACTCAGT-----GATATTGT- 3' Rnf11 mmu-miR-7astar beg:834 end:847 pic:3' ATACCGTCTGACACTAAACAAC 5'& |||||||||| &5' ------------TGATTTGTTG 3' Rnf11 mmu-miR-3470a beg:723 end:740 pic:3' GGTCGGACCAGA-TGTTTCACT 5'& || || .|||||||. &5' -------GG-CTAGCAAAGTGG 3' Rnf11 mmu-miR-582-5p beg:278 end:297 pic:3' TCATTGAC-CAAC-TTGTTGACAT 5'& | ||| |.|||||||| &5' -------GTGTTACAGCAACTGTA 3' Rnf11 mmu-miR-370 beg:1119 end:1137 pic:3' TGGTCCAAGGTGGG---GTCGTCCG 5'& |||| ||||||| &5' ---------CACCAATGCAGCAGG- 3' Rnf11 mmu-miR-504 beg:0 end:11 pic:3' CTATCTCACGTCTGGTCCCAGA 5'& .||||||||| &5' ------------GCCAGGGTCT 3' Rnf11 mmu-miR-1983 beg:1305 end:1324 pic:3' TCTTTTGTAC--GAGGTCCACTC 5'& .||| |||||||||| &5' ------TATGTTCTCCAGGTGA- 3' Rnf11 mmu-miR-412 beg:1308 end:1324 pic:3' GCCGATCACCTGGTCCACTT 5'& || |||||||| &5' ------GTTCTCCAGGTGA- 3' Rnf11 mmu-miR-141 beg:207 end:224 pic:3' GGTAGAAATGGTCTGTCACAAT 5'& ||| ||| ||||||| &5' ----CTTGACC---CAGTGTT- 3' Rnf11 mghv-miR-M1-6 beg:906 end:937 pic:3' TTTTGGT--GGAGTG-----TGTCAAAGT 5'& .|||| .||||. |||||||. &5' GAAACAGTTTCTCATCTGTAACAGTTTT- 3' Rnf11 mmu-miR-202-5p beg:257 end:272 pic:3' TTTCTTCATATACGTATCCTT 5'& |||| |||||||| &5' -----AGTA----CATAGGAA 3' Rnf11 mghv-miR-M1-7-5p beg:1370 end:1387 pic:3' TCCAATGGCGTG-GAGGTGGAAA 5'& ||.| ||||||||| &5' --------GCGCTCTCCACCTT- 3' Rnf11 mmu-miR-1898 beg:199 end:217 pic:3' CTAGGGGACAC-TTGGAACTGGA 5'& ||| |.|||||||| &5' -------TGTAAAGCCTTGACC- 3' Rnf11 mmu-miR-1958 beg:739 end:758 pic:3' TGAATGACGA-AGGTGAAAGGAT 5'& .|| ||| ||||||| &5' -----TTGATATCC-CTTTCCT- 3' Rnf11 mmu-miR-218-2star beg:964 end:980 pic:3' GCGCCACGAACTG-TCTTGGTAC 5'& || | .||||||| &5' ---------TGTCTGGAACCAT- 3' Rnf11 mmu-miR-329 beg:1041 end:1054 pic:3' TTTTTCCAATCGACCCACACAA 5'& || |||||||| &5' -----------CT-GGTGTGTT 3' Rnf11 mmu-miR-369-3p beg:533 end:553 pic:3' TTTCTAGTTGG-TACATAATAA 5'& |.|| .||||||||| &5' -----TTAAATAGTGTATTATT 3' Rnf11 mmu-miR-1193 beg:947 end:957 pic:3' CTATCATTTTGCCCACTGGAT 5'& ||||||| &5' -------------GTGACCT- 3' Rnf11 mmu-miR-802 beg:394 end:405 pic:3' TTCCTACTTAGAAACAATGACT 5'& |||||||| &5' --------------GTTACTGA 3' Rnf11 mcmv-miR-m01-3star beg:475 end:498 pic:3' CGGCACTT-CGCTCGCAAGGAGC 5'& ||. || || ||||.|. &5' GCT-TGTTTGCACA-GTTCTTT- 3' Rnf11 mcmv-miR-m01-3star beg:1313 end:1334 pic:3' CGGCACTTCGCTC-GCAAGGAGC 5'& || |.|.|| |||||||. &5' -CC---AGGTGATTCGTTCCTT- 3' Rnf11 mcmv-miR-m108-2-5p.1 beg:1072 end:1092 pic:3' GCCACGAGCGCAGCTCACTGGCG 5'& || ||.|| .|||||.| &5' --GT-CTTGCTA--GGTGACTG- 3' Rnf11 mcmv-miR-M44-1 beg:314 end:338 pic:3' TGGCGCCGAGACCTTTTTCTAT 5'& ..| |||. ||||||||||| &5' -TTGAAGCTTAGGAAAAAGATA 3' Rnf11 mmu-let-7astar beg:1129 end:1146 pic:3' CCTTTCTGTCATCTAACATATC 5'& .||| .| ||||||| &5' ------GCAG-GGTTTGTATA- 3' Rnf11 mmu-let-7bstar beg:1126 end:1146 pic:3' CCCTTCCGTCATCCA--ACATATC 5'& |||| ||| |||||| &5' ------GCAGCAGGGTTTGTATA- 3' Rnf11 mmu-let-7c-1star beg:1126 end:1146 pic:3' CCTTTCGATC-TTCC-AACATGTC 5'& || || |.|| |||||.| &5' -----GC-AGCAGGGTTTGTATA- 3' Rnf11 mmu-let-7c-2star beg:1129 end:1146 pic:3' CCTTTCTGTCATCTAACATATC 5'& .||| .| ||||||| &5' ------GCAG-GGTTTGTATA- 3' Rnf11 mmu-let-7fstar beg:1126 end:1146 pic:3' CCCTTCCGTTATCT--AACATATC 5'& |||. ||. ||||||| &5' ------GCAGCAGGGTTTGTATA- 3' Rnf11 mmu-miR-10a beg:1119 end:1139 pic:3' GTGTTTAAGCCTAGATGTCCCAT 5'& ||| ||| | .|||||| &5' CACCAATG-----CAGCAGGGT- 3' Rnf11 mmu-miR-10b beg:1119 end:1139 pic:3' GTGTTTAAGCCAAGATGTCCCAT 5'& ||| ||| | .|||||| &5' CACCAATG-----CAGCAGGGT- 3' Rnf11 mmu-miR-1194 beg:1314 end:1331 pic:3' TCCTAGATCGTCAA-TGAGTAAG 5'& ||| |.||.||| &5' ---------CAGGTGATTCGTTC 3' Rnf11 mmu-miR-1197 beg:754 end:769 pic:3' TCTTCATCTGGTACACAGGAT 5'& . ||||||.|| &5' ---------TTGTGTGTCTTA 3' Rnf11 mmu-miR-1-2-as beg:134 end:157 pic:3' ACCTTACA--TTTCTTCATACAT 5'& .|||| |..|||||||||. &5' ---GATGTTGAGGGAAGTATGTG 3' Rnf11 mmu-miR-139-5p beg:991 end:1013 pic:3' GACCTCTGTGCAC-GTGACATCT 5'& ||| | | || .||||||| &5' CTGCAT-CTCTTGTTACTGTAG- 3' Rnf11 mmu-miR-144 beg:990 end:1012 pic:3' TCATGTAGTAGAT--ATGACAT 5'& |.|||| ||| ||||||| &5' --TGCATC-TCTTGTTACTGTA 3' Rnf11 mmu-miR-145star beg:701 end:722 pic:3' GTTCTTGTCATAAA-GGTCCTTA 5'& ||. | || .|||||| &5' ---GAGTTG-ATGTGTCAGGAA- 3' Rnf11 mmu-miR-146a beg:486 end:497 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& |||||||. &5' -------------CAGTTCTT- 3' Rnf11 mmu-miR-146b beg:475 end:497 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& |||.|.| |||||||. &5' AGCTTGTTTGCA-CAGTTCTT- 3' Rnf11 mmu-miR-149 beg:61 end:82 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& |||. || |||||||. &5' -----TGAGCCCAAAGAGCCAGG 3' Rnf11 mmu-miR-17star beg:120 end:138 pic:3' GATGTTCACGGG---AGTGACGTCA 5'& ||. | .|||||| &5' ---------CCTGGATGGCTGCAG- 3' Rnf11 mmu-miR-184 beg:1060 end:1075 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& ||| | |.||.|| &5' ---------AGTAC-CTGTTCA 3' Rnf11 mmu-miR-185 beg:927 end:949 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& ||| .|| |||.||| &5' -CAGTT-TTGATTCTCTTTCC- 3' Rnf11 mmu-miR-1897-5p beg:1180 end:1204 pic:3' GGGGGAG--AAAGAGGTAGGTTTC 5'& |.|||. |||.|.| | ||| &5' -CTCCTTTATTTTTTCTTGCAA-- 3' Rnf11 mmu-miR-18a beg:1370 end:1388 pic:3' GATAGACGTGATCTACGTGGAAT 5'& ||.|| ||||||| &5' ------GCGCTCTC--CACCTTA 3' Rnf11 mmu-miR-1902 beg:1222 end:1238 pic:3' TTCAGTACGGATGACGTGGAGA 5'& .|| ||||||.||| &5' --------TCT-CTGCACTTCT 3' Rnf11 mmu-miR-1902 beg:984 end:1002 pic:3' TTCAGTACGGATGACGTGGAGA 5'& | |||||||.|||| &5' -------GGATACTGCATCTCT 3' Rnf11 mmu-miR-1929 beg:1040 end:1062 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |||| | |.| |||||||| &5' -TCTGGTGTGTT---TCCTAGAA 3' Rnf11 mmu-miR-1929 beg:1223 end:1250 pic:3' GAGACGAGAT-ATTTCAGGATCTT 5'& |||||| || |.||| .||||. &5' CTCTGCACTTCTGAAGGATTAGAG 3' Rnf11 mmu-miR-1929 beg:106 end:129 pic:3' GAGACGA--GATATTTCAGGATCTT 5'& |.| ||| ||| ||||.|| &5' ----GTTTCCTAAAAATTCCTGGA- 3' Rnf11 mmu-miR-1933-5p beg:879 end:899 pic:3' TTTGATTCTGGC-TTGTGGTACTGA 5'& || | ..||||||||. &5' -------GAAGGTGGCACCATGAT- 3' Rnf11 mmu-miR-1934 beg:62 end:89 pic:3' TCTCCTGC--TTCGTCCCCTGGTCT 5'& ||| | .||| ||||..||. &5' -GAGCCCAAAGAGCCAGGGATTAGG 3' Rnf11 mmu-miR-1938 beg:369 end:379 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& ||||||| &5' --------------TCCCACC- 3' Rnf11 mmu-miR-1940 beg:1298 end:1319 pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& |. |||| ||.||||| &5' ------TTTTCCTTAT--GTTCTCCA- 3' Rnf11 mmu-miR-1950 beg:624 end:641 pic:3' ACTGGTATAGGAATC---TACGTCT 5'& |||| ||||||| &5' -----------TTAGGAAATGCAGA 3' Rnf11 mmu-miR-1953 beg:944 end:964 pic:3' GTCTTCGGACTCTT--GAAAGGGT 5'& |||| || ||||||| &5' ------CCTGTGACCTCTTTCCC- 3' Rnf11 mmu-miR-1955 beg:549 end:565 pic:3' TTTTCGACGTCACGTAG-GACCCTGA 5'& .||| .||||.|| &5' -------------TATCGTTGGGGCT 3' Rnf11 mmu-miR-1957 beg:1301 end:1319 pic:3' CAGT-ATACGAGATGGTGAC 5'& || ||||.||| ||| &5' -TCCTTATGTTCT-CCA--- 3' Rnf11 mmu-miR-1958 beg:335 end:354 pic:3' TGAATGACGAAGGT-GAAAGGAT 5'& |.| .||||||| &5' -------GTTGTTATTTTTCCTA 3' Rnf11 mmu-miR-19a beg:475 end:491 pic:3' AGTCAAAACGTATCTAAACGTGT 5'& || .|||||||| &5' --------GCTT--GTTTGCACA 3' Rnf11 mmu-miR-19b beg:1125 end:1146 pic:3' AGTCAAAACGTA--CCTAAACGTGT 5'& |||| ||.||||.|.| &5' -------TGCAGCAGGGTTTGTATA 3' Rnf11 mmu-miR-19b beg:468 end:491 pic:3' AGTCAAAA--CGTACCTAAACGTGT 5'& .|||||| || .|||||||| &5' -TAGTTTTAAGCTT--GTTTGCACA 3' Rnf11 mmu-miR-200bstar beg:174 end:189 pic:3' AGGTTACGACGGGTCATTCTAC 5'& | ||||.|||| &5' ---------GAA-AGTAGGATG 3' Rnf11 mmu-miR-204 beg:131 end:150 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& ||| |||| .|||||| &5' --GCA---GATGTT-GAGGGAA 3' Rnf11 mmu-miR-205 beg:1223 end:1244 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& |||.| ||||||| &5' ----CTCTGCACTTCTGAAGGA 3' Rnf11 mmu-miR-205 beg:127 end:149 pic:3' GTCTGAGGCC-ACCTTACTTCCT 5'& |.|| | | || |||.||| &5' --GGCTGCAGATGT--TGAGGGA 3' Rnf11 mmu-miR-207 beg:1080 end:1103 pic:3' CTCCCTCCTCTCG--GTCCTCTTCG 5'& ||| || |||||||.|| &5' -----AGGTGACTGACAGGAGAGGC 3' Rnf11 mmu-miR-208a beg:748 end:770 pic:3' TGTTCGAAA--AACGAGCAGAATA 5'& |||| |||. .||||||| &5' -----CTTTCCTTGTGTGTCTTAT 3' Rnf11 mmu-miR-20bstar beg:984 end:1014 pic:3' GATCTTC-ACG-AGT-----GTGACGTCA 5'& .|| ||| || .||||.||| &5' --GGATACTGCATCTCTTGTTACTGTAGT 3' Rnf11 mmu-miR-216a beg:1001 end:1024 pic:3' AGTGTCAACGGTCGACTCTAAT 5'& |.|| || |. ||||||.||| &5' TTACTGTAGT--GCTGAGGTTA 3' Rnf11 mmu-miR-223 beg:388 end:407 pic:3' ACCCCATAAACTGTT---TGACTGT 5'& ||| ||||||| &5' ---------TGAAAAGTTACTGACA 3' Rnf11 mmu-miR-22star beg:1226 end:1246 pic:3' ATTTCGAACGGT--GACTTCTTGA 5'& ||| ||||||.|.| &5' -------TGCACTTCTGAAGGATT 3' Rnf11 mmu-miR-24 beg:47 end:70 pic:3' GACAAGGACGACT-TGACTCGGT 5'& || ||.| .|| |||||||| &5' -TGATCTT-TTGTCACTGAGCC- 3' Rnf11 mmu-miR-25 beg:1255 end:1277 pic:3' AGTCTGGCTCTGTTCACGTTAC 5'& | | || |||||.|||| &5' ---GGTCTAGTAAAGTGTAATG 3' Rnf11 mmu-miR-26a beg:560 end:580 pic:3' TCGGATAGGACCTA---ATGAACTT 5'& |||| |.|||||| &5' --------CTGGCTCTATGCTTGAA 3' Rnf11 mmu-miR-26b beg:560 end:580 pic:3' TGGATAGGACTTA---ATGAACTT 5'& |||. |.|||||| &5' -------CTGGCTCTATGCTTGAA 3' Rnf11 mmu-miR-292-3p beg:1214 end:1232 pic:3' TGTGAGTTTTGGACCGCCGTGAAA 5'& |.|||| |||.|| | |||| &5' ATACTCTAAATCT--CTGCAC--- 3' Rnf11 mmu-miR-29bstar beg:566 end:587 pic:3' ATTTGGTGGTAT--AC-TTTGGTCG 5'& | |.||. || |||||||. &5' -----CTCTATGCTTGAAAACCAGT 3' Rnf11 mmu-miR-30astar beg:656 end:678 pic:3' CG-ACGTTTGTAGGCTGACTTTC 5'& || ||.||.|| |||||.| &5' GCTTGTAAGCAA---ACTGAGA- 3' Rnf11 mmu-miR-30c-1star beg:355 end:377 pic:3' CCTCATTTGTT---GGGAGAGGGTC 5'& |||.|| .|.||||||| &5' -----AAATAAGTTTCTTCTCCCA- 3' Rnf11 mmu-miR-30c-2star beg:353 end:377 pic:3' TCTCATTTG--TCG--GAAGAGGGTC 5'& |.|| ||. ||||||||| &5' ----TGAAATAAGTTTCTTCTCCCA- 3' Rnf11 mmu-miR-30e beg:471 end:489 pic:3' GAAGGTCAGTTCCTACAAATGT 5'& |.||| |||||.|| &5' -------TTAAGCTTGTTTGCA 3' Rnf11 mmu-miR-30estar beg:656 end:678 pic:3' CG-ACATTTGTAGGCTGACTTTC 5'& || |||||.|| |||||.| &5' GCTTGTAAGCAA---ACTGAGA- 3' Rnf11 mmu-miR-31 beg:237 end:257 pic:3' GTCGATACGGTCGTAGAACGGA 5'& .|| || ||||||. &5' ---TTAGACCTTGTTCTTGCT- 3' Rnf11 mmu-miR-31star beg:964 end:984 pic:3' CTACCGTTATACA-ACC---GTATCGT 5'& ||| ||| ||||||| &5' ----------TGTCTGGAACCATAGCA 3' Rnf11 mmu-miR-32 beg:1255 end:1277 pic:3' ACGTTGAATCATTACACGTTAT 5'& .. |||||| |||.|||. &5' ---GGTCTAGTAAAGTGTAATG 3' Rnf11 mmu-miR-33 beg:1111 end:1132 pic:3' ACGTTACGTTGATGTTACGTG 5'& ||. ||| || ||||||| &5' TGTTTTGC-ACACCAATGCA- 3' Rnf11 mmu-miR-33 beg:619 end:639 pic:3' ACGTTACGTTGATG--TTACGTG 5'& |||| || |||||| &5' -----TGCAGTTAGGAAATGCA- 3' Rnf11 mmu-miR-3471 beg:1152 end:1173 pic:3' TTACGGAA-TGTCAAC-CTAGAGT 5'& ||| |.||||| ||||||| &5' -----CTTCATAGTTGTGATCTCA 3' Rnf11 mmu-miR-3472 beg:1011 end:1027 pic:3' CCAAGGAAGGTCGAAGACCGATAAT 5'& ||| ||.||||. &5' -----------GCTGA-GGTTATTG 3' Rnf11 mmu-miR-3473 beg:1361 end:1383 pic:3' CCGACTCGGTA----GAGAGGT 5'& ||||| ||||||| &5' ---TGAGCAGAAGCGCTCTCCA 3' Rnf11 mmu-miR-3473 beg:945 end:963 pic:3' CCGACTC-GGTAGAGAGGT 5'& ||| | || |||.||| &5' --CTGTGACC-TCTTTCC- 3' Rnf11 mmu-miR-3474 beg:637 end:660 pic:3' CTTAGGTG-CAGAGGAGGGTCCC 5'& ||||.||| || .||||.|| &5' GAATTCACAGTGATCTCCTAG-- 3' Rnf11 mmu-miR-34b-5p beg:512 end:527 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& |||| ||.||||| &5' ----------AATT-CATTGCCT 3' Rnf11 mmu-miR-34c beg:512 end:527 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& ||.| ||.||||| &5' ----------AATT-CATTGCCT 3' Rnf11 mmu-miR-34cstar beg:771 end:799 pic:3' GGACC-GACACACCA-----ATCACTAA 5'& .|| .|| ||||| |.||||| &5' -TTGTTTTG-GTGGTTAATATGGTGAT- 3' Rnf11 mmu-miR-367 beg:1262 end:1276 pic:3' AGTGGTAACGATTTCACGTTAA 5'& |||||||.||| &5' ----------TAAAGTGTAAT- 3' Rnf11 mmu-miR-378star beg:701 end:721 pic:3' TGTGTCCTGGACCT--CAGTCCTC 5'& || .|| ||||||| &5' ------GAGTTGATGTGTCAGGA- 3' Rnf11 mmu-miR-380-3p beg:984 end:998 pic:3' TTCTACACCTGGTATGATGTAT 5'& |||. |||.||| &5' -------GGAT---ACTGCAT- 3' Rnf11 mmu-miR-381 beg:748 end:764 pic:3' TGTCTCTCGAACGGGAACATAT 5'& ||| .||||||.|. &5' --------CTT-TCCTTGTGTG 3' Rnf11 mmu-miR-384-3p beg:615 end:634 pic:3' TAACACTTGTTAAAGATCCTTA 5'& ||| .||.| |||||| &5' --TGTTTGCAGT---TAGGAA- 3' Rnf11 mmu-miR-384-3p beg:71 end:92 pic:3' TAACACTT-GTTAAAGATCCTTA 5'& ||. ||. .||||||| &5' -----GAGCCAGGGATTAGGAAT 3' Rnf11 mmu-miR-384-3p beg:310 end:331 pic:3' TAACACTTGTTAAAGATCCTTA 5'& |||| .|||||| &5' --TGTGTTGAAGC-TTAGGAA- 3' Rnf11 mmu-miR-384-5p beg:468 end:489 pic:3' TGTAACGGATCCTTAACAAATGT 5'& |..| ||||||.|| &5' -----GTTTTAAGCTTGTTTGCA 3' Rnf11 mmu-miR-421 beg:298 end:321 pic:3' CGCGGGTTAATTACAGACAACTA 5'& |...|| .||| |||||| &5' --GTTTAAATTGTGTGTGTTGA- 3' Rnf11 mmu-miR-432 beg:5 end:27 pic:3' GACGGGTGACTAGA-TGAGGTTCT 5'& |.|. || .||| |||.|||| &5' --GTCT-CTCGTCTGACTTCAAG- 3' Rnf11 mmu-miR-448 beg:185 end:206 pic:3' TACCCTGTAGGATGTATACGTT 5'& |||.. ||||.|| &5' ---GGATGGTATTTTTATGTAA 3' Rnf11 mmu-miR-449b beg:951 end:972 pic:3' CGGTCGATTGTTGTGACGGA 5'& || || | |||||.|| &5' -CCT-CTTTCCCCACTGTCT 3' Rnf11 mmu-miR-450b-5p beg:117 end:139 pic:3' ATAAGT-CCTTGTATGACGTTTT 5'& |||| ||| .|||||.| &5' -ATTCCTGGATG--GCTGCAGA- 3' Rnf11 mmu-miR-450b-5p beg:624 end:642 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& |.||||| ||||.|| &5' ---TTAGGAAA----TGCAGAA 3' Rnf11 mmu-miR-455star beg:254 end:268 pic:3' GCTACATCAGGTTTCCGTGTAT 5'& |||| |.||||| &5' --------TCCA---GTACATA 3' Rnf11 mmu-miR-465a-5p beg:1332 end:1353 pic:3' AGTGTAGTCACGGTAAGATTTAT 5'& ||| |||||| .||| |.. &5' -CAC-TCAGTGATATTGTGG--- 3' Rnf11 mmu-miR-465a-5p beg:523 end:543 pic:3' AGTGTAGTCACGGTAAGATTTAT 5'& |.|| |.| ||.|||||| &5' -----TTAG-GTCTTTTTAAATA 3' Rnf11 mmu-miR-465c-5p beg:523 end:543 pic:3' GTCTAGTCGCGGTAAGATTTAT 5'& |.|| |.| ||.|||||| &5' ----TTAG-GTCTTTTTAAATA 3' Rnf11 mmu-miR-466l beg:1287 end:1302 pic:3' TTATACACACGTACATAAATAT 5'& ||||||.||||| &5' ---------GCATGTGTTTAT- 3' Rnf11 mmu-miR-468 beg:91 end:112 pic:3' GTCTGTGTGCGTGTAGTCAGTAT 5'& |||. ||.||||| |||. &5' -AGAT-CATGCACAAAAGTT--- 3' Rnf11 mmu-miR-491 beg:1367 end:1384 pic:3' GGAGTACCTTCCCAAGGGGTGA 5'& |||| | ||.|||| &5' -------GAAGCGCTCTCCAC- 3' Rnf11 mmu-miR-494 beg:1095 end:1119 pic:3' CTCCAAAGGGCAC-ATACAAAGT 5'& |||| .||| |||||||. &5' GAGGCAAA-TGTGTTATGTTTT- 3' Rnf11 mmu-miR-497 beg:632 end:658 pic:3' ATGTTT--GGTGTCACACGACGAC 5'& |.||.| .||||||| || || &5' TGCAGAATTCACAGTGATCTCCT- 3' Rnf11 mmu-miR-499 beg:751 end:769 pic:3' TTTGTAGTGACGTTCAGAATT 5'& || .||.. |||||| &5' -----TCCTTGTGTGTCTTA- 3' Rnf11 mmu-miR-504 beg:1125 end:1141 pic:3' CTATCTCACGTCTGGTCCCAGA 5'& ||||| ||||||.| &5' -------TGCAG--CAGGGTTT 3' Rnf11 mmu-miR-511 beg:1083 end:1104 pic:3' ACTCAC-GTCTCGTTTTCCGTA 5'& ||| || ||| .|.||||| &5' TGACTGACAG---GAGAGGCA- 3' Rnf11 mmu-miR-544 beg:623 end:643 pic:3' CTCGAACGAT-TTTTACGTCTTA 5'& |.|| .||||||||||| &5' ------GTTAGGAAATGCAGAAT 3' Rnf11 mmu-miR-546 beg:845 end:868 pic:3' CTGAGGC-----ACGGTGGTA 5'& .||..| ||||||||| &5' -GCTTTGAATTATGCCACCAT 3' Rnf11 mmu-miR-592 beg:435 end:455 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& |.|| || ||.||||| &5' ---TTATAACAC--TGGCACAA- 3' Rnf11 mmu-miR-599 beg:433 end:455 pic:3' CAAACTATT-TGACTGTGTT 5'& ||| |||| ||||.||||| &5' -TTTTATAACACTGGCACAA 3' Rnf11 mmu-miR-664 beg:171 end:192 pic:3' ATCCGACCCCT--CAT-TTACTTAT 5'& ||||| ||| .|||.||. &5' ------GGGGAAAGTAGGATGGATG 3' Rnf11 mmu-miR-665 beg:110 end:128 pic:3' TCCCTGGAGTCG-GAGGACCA 5'& ||| .|||||| &5' -----CCTAAAAATTCCTGG- 3' Rnf11 mmu-miR-669g beg:1109 end:1132 pic:3' TAGTACAGT-TGTGTATGTTACGT 5'& |.||||. .|||| ||||||| &5' -TTATGTTTTGCACAC-CAATGCA 3' Rnf11 mmu-miR-674 beg:1323 end:1344 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& |.. ||.||| ||||||| &5' --CGTTCCTTCCA-CTCAGTG- 3' Rnf11 mmu-miR-678 beg:242 end:265 pic:3' GGAGGTCAGGAACGTGGCTC-TG 5'& |||. ||.||||| || || || &5' CCTT--GTTCTTGCTCC-AGTAC 3' Rnf11 mmu-miR-680 beg:120 end:143 pic:3' GGGGGTACAGTCGTCTACGGG 5'& ||. ||| |||||||.. &5' CCTGGATGGCTGCAGATGTT- 3' Rnf11 mmu-miR-682 beg:118 end:138 pic:3' GTCTGAAGTGAC--ACTGACGTC 5'& ||| ||| ||.|||||| &5' -----TTC-CTGGATGGCTGCAG 3' Rnf11 mmu-miR-683 beg:1116 end:1136 pic:3' CTCCTGTGTCGA-ATGTCGTCC 5'& .|||| |.||||||| &5' ----GCACACCAATGCAGCAGG 3' Rnf11 mmu-miR-686 beg:1083 end:1105 pic:3' AGAAGTGGCAGACC-CTTCGTTA 5'& | ||.| | || ||.|||| &5' ---TGACTGACAGGAGAGGCAA- 3' Rnf11 mmu-miR-687 beg:978 end:992 pic:3' AGTAACGACGTAAGGTCCTATC 5'& ||| |||||| &5' --------GCAAA--AGGATA- 3' Rnf11 mmu-miR-691 beg:703 end:722 pic:3' AAAAGACGGAGAGA-AGTCCTTA 5'& |.. ||||||| &5' ------GTTGATGTGTCAGGAA- 3' Rnf11 mmu-miR-696 beg:973 end:996 pic:3' GGGTGTCGT--TCGTGTG-CG 5'& |||.|||| || |.|| || &5' -CCATAGCAAAAGGATACTGC 3' Rnf11 mmu-miR-704 beg:285 end:305 pic:3' GATCCTCGTCT-CGTGTACAGA 5'& |||| |.||||||.| &5' -----AGCAACTGTACATGTTT 3' Rnf11 mmu-miR-706 beg:906 end:922 pic:3' AAAAAACTCTGTCCCAAAGAGA 5'& || ||| ||||||| &5' ------GAAACA--GTTTCTC- 3' Rnf11 mmu-miR-713 beg:305 end:324 pic:3' CGACACACGGAAGTCACGT 5'& .||||||. || | || &5' -TTGTGTGTGTTGAA-GC- 3' Rnf11 mmu-miR-741 beg:983 end:1003 pic:3' AGATGTATCTTAC--CGTAGAGAGT 5'& ||.|| ||||||||. &5' -------AGGATACTGCATCTCTT- 3' Rnf11 mmu-miR-742 beg:27 end:51 pic:3' AAATGG--GTCGT-ACCACCGAAAG 5'& ||| |||. ||||||.||| &5' ---ACCATCAGTTTTGGTGGTTTT- 3' Rnf11 mmu-miR-744 beg:1215 end:1232 pic:3' ACGACAATCGGGATC--GGGGCGT 5'& |.||| |.|.||| &5' ---------CTCTAAATCTCTGCA 3' Rnf11 mmu-miR-758 beg:271 end:290 pic:3' ATCACCTGGTC-CAGTGTTT 5'& ||| || ||.|||. &5' --GTGTAA-AGTGTTACAG- 3' Rnf11 mmu-miR-7b beg:633 end:657 pic:3' TGTTGTTTT-AGTGTT-C-AGAAGGT 5'& .||.|| |||||. | || ||| &5' ---GCAGAATTCACAGTGATC-TCC- 3' Rnf11 mmu-miR-802 beg:990 end:1010 pic:3' TTCCTACTTAGA-AACAATGACT 5'& || |||| ||||||||| &5' -----TGCATCTCTTGTTACTG- 3' Rnf11 mmu-miR-876-5p beg:805 end:823 pic:3' ATCACTAAGTGTCTCTTTAGGT 5'& ||| |||||.|| &5' -------TCAAGTTGAAATTCA 3' Rnf11 mmu-miR-877 beg:1174 end:1192 pic:3' GGGACGCGGTAGAGGAGATG 5'& | |. ||||||.||. &5' ----GAACT-TCTCCTTTAT 3' Rnf11 mmu-miR-879 beg:189 end:213 pic:3' CCGAATCTCGATA-TTCGGAGA 5'& ||. |.| ||||||. &5' GGTATTTTTATGTAAAGCCTT- 3' Rnf11 mmu-miR-883a-3p beg:614 end:630 pic:3' TATGACTCTCGAC-AACGTCAAT 5'& ||| ||||||||| &5' ----------CTGTTTGCAGTTA 3' Rnf11 mmu-miR-883a-5p beg:1317 end:1343 pic:3' CATTGA-CGATGAAGA-GAGTCGT 5'& ||.|.| |.| |||| |||||. &5' GTGATTCGTTCCTTCCACTCAGT- 3' Rnf11 mmu-miR-883b-3p beg:615 end:630 pic:3' TATGACTCTCTAC-AACGTCAAT 5'& || ||||||||| &5' -----------TGTTTGCAGTTA 3' Rnf11 mmu-miR-92a beg:1255 end:1277 pic:3' GTCCGGCCCTGTTCACGTTAT 5'& ||.| |||||.|||. &5' --GGTCTAGTAAAGTGTAATG 3' Rnf11 mmu-miR-92b beg:1255 end:1277 pic:3' CCTCCGGCCCTGCTCACGTTAT 5'& ||.| | ||||.|||. &5' ---GGTCTAGTAAAGTGTAATG 3' Rnf11 mmu-miR-491 beg:951 end:968 pic:3' GGAGTACCTTCCCAAGGGGTGA 5'& |||| ||||||||| &5' CCTCT--------TTCCCCACT 3' Rnf11 mmu-miR-712 beg:1225 end:1243 pic:3' CCATGGCG-GGCCCACTTCCTC 5'& |.|| |. ||||||| &5' ----CTGCACTTC-TGAAGGA- 3' Rnf11 mmu-miR-466j beg:1108 end:1125 pic:3' AATGTGTGTACGTGTACGTGTGT 5'& .|||. ||||||| &5' -------TATGTTT-TGCACAC- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Rnf11; N4wbp2; Sid1669 mmu-let-7d* 1128 1147 UCUUUCCGUCGUCC--AGCAUAUC |||||||| |:||||| -----UGCAGCAGGGUUUGUAUAA Rnf11; N4wbp2; Sid1669 mmu-miR-124a 752 770 CCGUAAGUGGCGCACGGAAU- ||| ::|:|||:|||| ---UUUCCUUGUGUGUCUUAU Rnf11; N4wbp2; Sid1669 mmu-miR-127 726 747 -CGGUUCGAGUCUGCCUAGGCU- ||: ||| || :|||| || GGCU-AGCAAAG-UGGAUUUGAU Rnf11; N4wbp2; Sid1669 mmu-miR-138 436 452 CUAAGUGUUGUGGUCGA ||:|:|||||::|| -UUUUAUAACACUGGCA Rnf11; N4wbp2; Sid1669 mmu-miR-139 986 1014 -UCUGUGCACG----------UGACAUCU :||:|| ||| ||||||| AGGAUAC-UGCAUCUCUUGUUACUGUAGU Rnf11; N4wbp2; Sid1669 mmu-miR-140 1122 1152 GAUGGUA------UCCCAUU----UUGGUGAC |||| ||||| |||||| -CACCAAUGCAGCAGGGUUUGUAUAACCACA- Rnf11; N4wbp2; Sid1669 mmu-miR-144 989 1013 GAUCAUGUAGUAGAU--AUGACAU- || |:|||| ||| ||||||| AUACUGCAUC-UCUUGUUACUGUAG Rnf11; N4wbp2; Sid1669 mmu-miR-146b 476 498 -UCGGAUACCUUAAGUCAAGAGU |||:|:| |||||||: AAGCUUGUUUGCA-CAGUUCUUU Rnf11; N4wbp2; Sid1669 mmu-miR-148b 666 685 -UGUUUCAAGACACUACGUGACU :|||| ||| |||||||| AGCAAA---CUGAGAUGCACUA- Rnf11; N4wbp2; Sid1669 mmu-miR-149 63 83 CCUCACUUCUGUGCCUCGGUCU- |||: || |||||||: ---CUGAGCCCAAAGAGCCAGGG Rnf11; N4wbp2; Sid1669 mmu-miR-151 19 42 -GGAGUUC-CUCGG-AGUCAGAUC |:||||| || || |||||:| ACUUCAAGUGAACCAUCAGUUUU- Rnf11; N4wbp2; Sid1669 mmu-miR-152 30 68 GGGU-----------UCAAGAC-AGU--AC-GUGACU- ||| :|||:|| || || |||||| ACCAUCAGUUUUGGUGGUUUUGAUCUUUUGUCACUGAG Rnf11; N4wbp2; Sid1669 mmu-miR-17-3p 603 629 AUGUUCACGG-----GAGUGACGUCA- :||||||: || :|||||| -GUAAGUGCUAUAUUCUGUUUGCAGUU Rnf11; N4wbp2; Sid1669 mmu-miR-183 582 616 -GUCACUUAAGA--UGG-------UCACGGUAU- |||| |||: ||| |||||:||| CCAGUUUAUUUAUAACCUGUUGUAAGUGCUAUAU Rnf11; N4wbp2; Sid1669 mmu-miR-188 964 992 -UGGGAGG---UGGUA-CGUUC-CCUAC ||: ||: ||||| |||| |||| CACUGUCUGGAACCAUAGCAAAAGGAUA Rnf11; N4wbp2; Sid1669 mmu-miR-194 256 290 -AGG---UGUA-CCUCAACG------ACAAUGU- ||| |||| ||| |||: ||||||| CUCCAGUACAUAGGAAUUGUGUAAAGUGUUACAG Rnf11; N4wbp2; Sid1669 mmu-miR-199b 415 451 CUUGUCCA---------UCAGAU--------UUGUGACCC |||| || ||| |||||||| ---AAGGUUUUAUUAAAAG-CUACAUUUUAUAACACUGGC Rnf11; N4wbp2; Sid1669 mmu-miR-19a 468 492 AGUCAAAA--CGUAUCUAAACGUGU- :|||||| || :|||||||| GUAGUUUUAAGCUU--GUUUGCACAG Rnf11; N4wbp2; Sid1669 mmu-miR-19b 1113 1147 AGUCAAAACGUA------------CCUAAACGUGU- |||||||| ||:||||:|:| --UGUUUUGCACACCAAUGCAGCAGGGUUUGUAUAA Rnf11; N4wbp2; Sid1669 mmu-miR-201 985 1016 -UCUUGUUACGG-------AAUGAC-UCAU- ||:|:| ||| |||||| |||: AAGGAUACUGCAUCUCUUGUUACUGUAGUGC Rnf11; N4wbp2; Sid1669 mmu-miR-207 1082 1104 CUCCCUCCUCUCG--GUCCUCUUCG- ||| || |||||||:|| ----UAGGUGACUGACAGGAGAGGCA Rnf11; N4wbp2; Sid1669 mmu-miR-212 1079 1114 CCGG--CACUGAC------CUCUG-----ACAAU- ||: ||||||| |||:| ||||| UGCUAGGUGACUGACAGGAGAGGCAAAUGUGUUAU Rnf11; N4wbp2; Sid1669 mmu-miR-218 86 108 UGUACCAA---UCUAGUUCGUGUU- || |||||| |||||| ---AGGAAUUAAGAUCAUGCACAAA Rnf11; N4wbp2; Sid1669 mmu-miR-291b-3p 663 685 CUGUUUGUUUUAC-CUACGUGAAA :||:|||| || |||||||| -GUAAGCAAACUGAGAUGCACUA- Rnf11; N4wbp2; Sid1669 mmu-miR-292-3p 865 894 -UGUGAGU-----UUUGGA-CCGCCGUGAA |::||:| |||| ||:||||| CAUGCUUAUAUAAAAACGAAGGUGGCACC- Rnf11; N4wbp2; Sid1669 mmu-miR-298 1210 1233 CCUUCUUGUCGGGA---GGAGACGG |||||:| |:|| :|||||| -UAAGAAUA-CUCUAAAUCUCUGCA Rnf11; N4wbp2; Sid1669 mmu-miR-29a 28 47 -UUGGCUAAAGUCU--ACCACGAU |||| |||| ||||| GAACCA---UCAGUUUUGGUGG-- Rnf11; N4wbp2; Sid1669 mmu-miR-323 1245 1279 -UCUCCAGCUGG------------CACAUUACACG |||||| || ||||||||| UAGAGGUAGAAAUGGUCUAGUAAAGUGUAAUGUU- Rnf11; N4wbp2; Sid1669 mmu-miR-328 124 152 UGCCUUCC--CGUCU----CUCCCGGUC- :||| || ||||| ||||| || CUGGAUGGCUGCAGAUGUUGAGGGA-AGU Rnf11; N4wbp2; Sid1669 mmu-miR-329 1016 1055 UUUUUCCAA-----UCGAC-------------CCACACAA :||||| ||:| |||||||| --UGAGGUUAUUGAAGUUACAGAAACACAUCUGGUGUGUUU Rnf11; N4wbp2; Sid1669 mmu-miR-330 553 578 AGAGA-----CGUCCGGGACACGAAACG || || |||:|| ||||| -AUCGUUGGGGCUGGCUCUAUGCUUG-- Rnf11; N4wbp2; Sid1669 mmu-miR-337 541 568 UUUC-CGUAGUAUAU----CCUCGACUU || |:||:|| ||:||||: -UAGUGUAUUAUUAUCGUUGGGGCUGGC Rnf11; N4wbp2; Sid1669 mmu-miR-339 63 85 -ACUCGAGGAC-CUCCUGUCCCU- ||||| || ||| |||||| CUGAGC-CCAAAGAGC-CAGGGAU Rnf11; N4wbp2; Sid1669 mmu-miR-346 558 580 UCUCCGUCCGUGAGCCCGU-CUGU |:||| ||| || || || UGGGGCUGGCUCUAU-GCUUGAA- Rnf11; N4wbp2; Sid1669 mmu-miR-34a 973 997 UUGUUGG--UCGA--UUCUGUGACGGU |||| ||| |:||:||||| --GAACCAUAGCAAAAGGAUACUGCA- Rnf11; N4wbp2; Sid1669 mmu-miR-362 59 87 AAGUG---UGGA--UCCAAGGUUCCUAA- |||| :|| || |||:||||| GUCACUGAGCCCAAAGAG-CCAGGGAUUA Rnf11; N4wbp2; Sid1669 mmu-miR-377 1091 1112 -UGUUUUCAACGGAAACACACUA |||::|| || ||||| GACAGGAGAGGCAAAUGUGUU-- Rnf11; N4wbp2; Sid1669 mmu-miR-378 60 84 UGUGUCCUGGAC--CUCAGUCCUC ||| | :|| ||| ||||: UCACUGAGCCCAAAGAGCCAGGGA Rnf11; N4wbp2; Sid1669 mmu-miR-383 1 25 UCGGUGUCAGUGGA-AGACU--AGA |||| :||| |: ||||| || -GCCAGGGUCUCUCGUCUGACUUCA Rnf11; N4wbp2; Sid1669 mmu-miR-410 1095 1118 -UUGUCCGGUAGACACAAUAUAA- :| |||| ||||||||:|| GGAGAGGCAAA-UGUGUUAUGUUU Rnf11; N4wbp2; Sid1669 mmu-miR-412 127 153 -UGCCGA--UC-ACCUGGUCCACUUCA- |:|||| || || : ||| ||||| GAUGGCUGCAGAUGU-UGAGG-GAAGUA Rnf11; N4wbp2; Sid1669 mmu-miR-422b 5 35 -CCGGA----AGACUGAGGUUCA---GGUC ||:|| |||||||:||||| ||| GGGUCUCUCGUCUGACUUCAAGUGAACCAU Rnf11; N4wbp2; Sid1669 mmu-miR-433-3p 880 902 UGUGGC-UCC-UCG-GGUAGUACUA || ||| :|| |||| |||| ---ACGAAGGUGGCACCAUGAUGAA Rnf11; N4wbp2; Sid1669 mmu-miR-434-5p 300 326 CCAAGUUUGGUACU--CAGC-UCGA- |||:|||:::|| ||:| |||| UGUUUAAAUUGUGUGUGUUGAAGCUU Rnf11; N4wbp2; Sid1669 mmu-miR-449 974 997 -UGGUCGAUUGUUA---UGUGACGGU |||| ||:||| |:||||| AACCA--UAGCAAAAGGAUACUGCA- Rnf11; N4wbp2; Sid1669 mmu-miR-450 971 989 AUAAUCCUUGUGUAGCGUUUUU- ||||| ||| ||||||: ----UGGAAC-CAUAGCAAAAGG Rnf11; N4wbp2; Sid1669 mmu-miR-450b 714 738 AUAAGUCCU-UGUA-UGA-CGUUUU- |||||| ||| :|| |||||: --GUCAGGAAACAAGGCUAGCAAAGU Rnf11; N4wbp2; Sid1669 mmu-miR-455-3p 541 567 -UCACAU-AUACGGGCA--CCUGACGUA |||||| ||| :||| ||:||| UAGUGUAUUAUUAUCGUUGGGGCUGG-- Rnf11; N4wbp2; Sid1669 mmu-miR-469 1083 1105 -CCUGUGGUUCUAGUUACUUUCUCCGU- || ||: || ||: :||||||| AGGUGACU--GA-CAG---GAGAGGCAA Rnf11; N4wbp2; Sid1669 mmu-miR-488 541 563 AACUCUCACG--AUAAUAG--ACCC- ||||: ||||||| |||| ----UAGUGUAUUAUUAUCGUUGGGG Rnf11; N4wbp2; Sid1669 mmu-miR-490 1287 1323 -GUCGUAC-CU-------------CAGGAGGUCCAAC :|||||| | ||:|||||||| UUAGCAUGUGUUUAUUUUCCUUAUGUUCUCCAGGUG- Rnf11; N4wbp2; Sid1669 mmu-miR-491 953 969 -GGAGUACCUUCCCAAGGGGUGA- |||| ||||||||| ACCUCU--------UUCCCCACUG Rnf11; N4wbp2; Sid1669 mmu-miR-540 1 24 -GGUCCUAGCU-GGAGACUGGA- |||||:|| | ||||||:| GCCAGGGUCUCUCGUCUGACUUC Rnf11; N4wbp2; Sid1669 mmu-miR-546 847 869 CUGAGGC-----ACGGUGGUA- :|| | ||||||||| AGCUUUGAAUUAUGCCACCAUG Rnf11; N4wbp2; Sid1669 mmu-miR-551b 389 416 GUGACUU-----UGGUUCAU-ACCCAGC ||||| ||::| |||||| -UCUGAAAAGUUACUGACAUUUGGGUCA Rnf11; N4wbp2; Sid1669 mmu-miR-670 1121 1139 AAGUGGUGUAUGUGAGUCCCUA ||||| ||:|| ||||| -ACACCA-AUGCAG-CAGGGU- Rnf11; N4wbp2; Sid1669 mmu-miR-675-5p 947 969 UGACACCCGGGAAAGGCGUGGU ||||| |:|||||| |||: CCUGUGACCUCUUUCCCCACUG Rnf11; N4wbp2; Sid1669 mmu-miR-677 33 69 -AGUCU---UCG-----AUUAG----UAGUGACUU- |||| :|: |:||| :|||||||: AUCAGUUUUGGUGGUUUUGAUCUUUUGUCACUGAGC Rnf11; N4wbp2; Sid1669 mmu-miR-678 651 680 -GGAGGUCAGGAACG------UGGCUCUG- :|||| ||||: ||:||||: AUCUCCUAG-CUUGUAAGCAAACUGAGAUG Rnf11; N4wbp2; Sid1669 mmu-miR-680 121 144 GGGGG--UACAGUCGUCUACGGG :||: ||| | |||||||:: UUCCUGGAUGGCUGCAGAUGUUG Rnf11; N4wbp2; Sid1669 mmu-miR-681 1082 1104 -UCGACGGACGGUCG-CUCCGAC || || ||| ||| ||||| UAGGUGACUGACAGGAGAGGCA- Rnf11; N4wbp2; Sid1669 mmu-miR-682 1072 1097 -GUCUGAAGUGA--CACUGAC-GUC- ||| ||| :|| ||||||| ||| UCAGUCUU-GCUAGGUGACUGACAGG Rnf11; N4wbp2; Sid1669 mmu-miR-683 1118 1138 CUCCUGUGUCGA-AUGUCGUCC- :|||| |:||||||| ---UGCACACCAAUGCAGCAGGG Rnf11; N4wbp2; Sid1669 mmu-miR-686 955 986 -AGAA----GUGGCAGACCCU----UCGUUA |||| |||:|||||| ||||| CUCUUUCCCCACUGUCUGGAACCAUAGCAAA Rnf11; N4wbp2; Sid1669 mmu-miR-689 64 86 CCUGGGGCGGCUCGC-CCCUGC || ||| |||| ||||: UGAGCCCAAAGAGCCAGGGAUU Rnf11; N4wbp2; Sid1669 mmu-miR-691 614 635 AAAAGACGGAGAGAAGUCCUUA |||||::| |:||||| -AUUCUGUUUGCAGUUAGGAAA Rnf11; N4wbp2; Sid1669 mmu-miR-693-5p 116 136 CUUUUGAAAGCCUACACCGAC- ||||:| :||| |||||| AAAAAUUCCUGGA--UGGCUGC Rnf11; N4wbp2; Sid1669 mmu-miR-695 52 74 AAGU---CAGUGGAUACGGGUUAGA || |||||: |||||| AUCUUUUGUCACUGA-GCCCAAA-- Rnf11; N4wbp2; Sid1669 mmu-miR-701 30 50 AGGUAGAUAAAGUCGCCGAUU ||||| :|||::|:||:| ACCAUCAGUUUUGGUGGUUU- Rnf11; N4wbp2; Sid1669 mmu-miR-706 1 15 AAAAAACUCUGUCCCAAAGAGA | |||||| |||| --------GCCAGGGUCUCUCG Rnf11; N4wbp2; Sid1669 mmu-miR-708 1244 1267 -AUCUUCGAG--UGUCAGAUCAAC ||||:|: |::||||||| UUAGAGGUAGAAAUGGUCUAGUA- Rnf11; N4wbp2; Sid1669 mmu-miR-709 938 960 -AGGAGGACGGAGAC-GGAGG- |:|||:| ||| || ||||: AUUCUCUUUCCUGUGACCUCUU Rnf11; N4wbp2; Sid1669 mmu-miR-712 1063 1100 CCAUGG-----------CGGGCCCACU-----UCCUC- ||||| ||: ||||| ||||| AGUACCUGUUCAGUCUUGCUA-GGUGACUGACAGGAGA Rnf11; N4wbp2; Sid1669 mmu-miR-717 3 21 UCUCUUCCAUAGAGACAGACUC |:||| |||| |||||| ---CAGGGUCUCUC-GUCUGAC Rnf11; N4wbp2; Sid1669 mmu-miR-719 993 1023 UUGUAA-----AAAGACAU--CGGCUCUA- :||| || ||||| ||:|||:| UGCAUCUCUUGUUACUGUAGUGCUGAGGUU Rnf11; N4wbp2; Sid1669 mmu-miR-741 980 1004 GAUGUA-UCUUAC--CGUAGAGAGU :|| ||:|| ||||||||: -AGCAAAAGGAUACUGCAUCUCUUG Rnf11; N4wbp2; Sid1669 mmu-miR-742 29 52 AAAUGG--GUCGU-ACCACCGAAAG ||| |||: ||||||:||| --AACCAUCAGUUUUGGUGGUUUUG Rnf11; N4wbp2; Sid1669 mmu-miR-764-3p 635 659 -UGUCAACGGUGAUACCGGAGGA- :||| :||| :|| :||||| UGCAGAAUUCACAGUGAUCUCCUA Rnf11; N4wbp2; Sid1669 mmu-miR-801 1113 1137 CAGCUAAGGCGUGCG----UGUCGUUAG :|| |||| | :|||||: ---UGUUUUGCACACCAAUGCAGCAGG- Rnf11; N4wbp2; Sid1669 mmu-miR-802 984 1011 -UUCCU---ACUUAGA-AACAAUGACU ||||| || |||| ||||||||| AAAGGAUACUGCAUCUCUUGUUACUGU Rnf11; N4wbp2; Sid1669 mmu-miR-139 1006 1013 ----------------UCUGUGCAC----------GUGACAUCU :||:|| || :||||||| UGGAACCAUAGCAAAAGGAUAC-UGCAUCUCUUGUUACUGUAGU Rnf11; N4wbp2; Sid1669 mmu-miR-149 74 81 CCUC---------------------ACUUCUGUGCCUCGGUCU |||: || |||||||: UUUGGUGGUUUUGAUCUUUUGUCACUGAGCCCAAAGAGCCAGGG Rnf11; N4wbp2; Sid1669 mmu-miR-199b 443 450 CUUGUCCA---UCAGAU-------------------UUGUGACCC :||| :||:| |||||||| UU--GGGUCAAGGUUUUAUUAAAAGCUACAUUUUAUAACACUGGC Rnf11; N4wbp2; Sid1669 mmu-miR-19a 483 490 A--------------------GUCAAAA--CGUAUCUAAACGUGU :|||||| || :|||||||| GGCACAAAAAAAAAAAAAUAGUAGUUUUAAGCUU--GUUUGCACAG Rnf11; N4wbp2; Sid1669 mmu-miR-19b 483 490 A--------------------GUCAAAA--CGUACCUAAACGUGU :|||||| || :|||||||| GGCACAAAAAAAAAAAAAUAGUAGUUUUAAGCUU--GUUUGCACAG Rnf11; N4wbp2; Sid1669 mmu-miR-19b 1116 1123 A-----------GUCAAAA-CGU--AC-CU-----AAACGUGU ||| ||| || | |||||||| CUAGGUGACUGACAGGAGAGGCAAAUGUGUUAUGUUUUGCACAC Rnf11; N4wbp2; Sid1669 mmu-miR-24 63 70 ---------------------GACAAGGACGACU-UGACUCGGU :|| ||:| :|| |||||||| GAACCAUCAGUUUUGGUGGUUUUGAUCUU-UUGUCACUGAGCCC Rnf11; N4wbp2; Sid1669 mmu-miR-329 1046 1053 UUU---UUCCAAUCGAC-------------------CCACACAA :|||||| :|| |||||||| AGUGCUGAGGUUA-UUGAAGUUACAGAAACACAUCUGGUGUGUUU Rnf11; N4wbp2; Sid1669 mmu-miR-370 1130 1137 UUGGUC-------------CAAG----GUGGG---GUCGUCCG |||: |||| ||||||| GGAGAGGCAAAUGUGUUAUGUUUUGCACACCAAUGCAGCAGGG Rnf11; N4wbp2; Sid1669 mmu-miR-378 714 721 UGUGUC-------------------CUGGACCU--CAGUCCUC :||| || :|| ||||||| GCACUAUCCCUUUUCUAUUAAGAAUGAGUUGAUGUGUCAGGAA Rnf11; N4wbp2; Sid1669 mmu-miR-491 960 967 ----------------------GGAGUACCUUCCCAAGGGGUGA ||| :|| ||||||||| UGUAACAGUUUUGAUUCUCUUUCCU-GUGACCUCUUUCCCCACUG Rnf11; N4wbp2; Sid1669 mmu-miR-501 984 991 ---------AAAGUGGGUC-----CCUG--------UUUCCUAA |||| |||| ||| ||||||| UGUGACCUCUUUC-CCCACUGUCUGGAACCAUAGCAAAAGGAUA Rnf11; N4wbp2; Sid1669 mmu-miR-546 860 867 C----------------------UGAGGC-----ACGGUGGUA :||::| ||||||||| UAUUAAUAUUUCUGAUUUGUUGAGCUUUGAAUUAUGCCACCAUG Rnf11; N4wbp2; Sid1669 mmu-miR-674 1337 1344 AU----------------------GUGGUGAGGGUAGAGUCACG |:: ||:||| ||||||| UUUCCUUAUGUUCUCCAGGUGAUUCGUUCCUUCCA-CUCAGUGA Rnf11; N4wbp2; Sid1669 mmu-miR-677 60 67 ---------AGUCU---UCGAUU---------AGUAGUGACUU |||| :|: | |||||||: AGUGAACCAUCAGUUUUGGUGGUUUUGAUCUUUUGUCACUGAGC Rnf11; N4wbp2; Sid1669 mmu-miR-705 371 378 AC------------GGGU-----------GGGGUGGAGGGUGG ||:| : | :|||||||| UAGUUGUUAUUUUUCCUAAAUGAAAUAAGUUUCUUCUCCCACCC Rnf11; N4wbp2; Sid1669 mmu-miR-712 1237 1244 CCAU----------------------GGCG-GGCCCACUUCCUC |:|| |: ||||||| AAUUAAUGUAAGAAUACUCUAAAUCUCUGCACUUC-UGAAGGAU Rnf11; N4wbp2; Sid1669 mmu-miR-743 761 768 AGAU---------------------GAGUCGAAC-CACAGAAA ||: |||| ||||||| GGCUAGCAAAGUGGAUUUGAUAUCCCUUUCCUUGUGUGUCUUA Rnf11; N4wbp2; Sid1669 mmu-miR-802 1003 1010 -----------------UUCCU---ACUUAGA-AACAAUGACU ||||| || |||| ||||||||| GUCUGGAACCAUAGCAAAAGGAUACUGCAUCUCUUGUUACUGU Rnf11; N4wbp2; Sid1669 mmu-let-7d* 1123 1146 ucuUUCCGUCGUCC--AGCAUAUc || |||||||| |:||||| accAATGCAGCAGGGTTTGTATAa Rnf11; N4wbp2; Sid1669 mmu-miR-124a 749 768 ccGUAAGUGGCGCACGGAAU | ||| ::|:|||:|||| ccCTTTCCTTGTGTGTCTTA Rnf11; N4wbp2; Sid1669 mmu-miR-138 435 451 cuAAGUGUUGUGGUCGa ||:|:|||||::|| atTTTATAACACTGGCa Rnf11; N4wbp2; Sid1669 mmu-miR-140 1127 1152 gAUGGUAUCC----CAUUUUGGUGac |:| : ||| ||| |||||| aTGCAGCAGGGTTTGTATAACCACat Rnf11; N4wbp2; Sid1669 mmu-miR-146b 477 497 UCGGAU-ACCUUAAGUCAAGAgu |||:|: | | | ||||||| AGCTTGTTTGCA--CAGTTCTtt Rnf11; N4wbp2; Sid1669 mmu-miR-148b 667 685 uGUUUCAAGACACUACGUGAcu |||| ||| |||||||| gCAAA---CTGAGATGCACTat Rnf11; N4wbp2; Sid1669 mmu-miR-149 60 81 ccUCACUUCUGUGCCUCGGUCu | |||: || ||||||| tcACTGAGCCCAAAGAGCCAGg Rnf11; N4wbp2; Sid1669 mmu-miR-151 20 42 GGAGUUC-CUCGG-AGUCAGAuc |:||||| || || |||||:| CTTCAAGTGAACCATCAGTTTtg Rnf11; N4wbp2; Sid1669 mmu-miR-152 41 66 ggguuCAAGAC---AGUAC-GUGACU |||:|| |: || |||||| tggtgGTTTTGATCTTTTGTCACTGA Rnf11; N4wbp2; Sid1669 mmu-miR-17-3p 602 627 AUGUUCACG-----GGAGUGACGUCA |::|||||| :|| :|||||| TGTAAGTGCTATATTCTGTTTGCAGT Rnf11; N4wbp2; Sid1669 mmu-miR-183 583 614 GUCACUUAAG-A-UGG-------UCACGGUAU |||| |||: | ||| |||||:||| CAGTTTATTTATAACCTGTTGTAAGTGCTATA Rnf11; N4wbp2; Sid1669 mmu-miR-184 1303 1336 ugGGAAUA------GUC----AAG--AGGCAGGU |||||| ||| ||| ||| |||| ttCCTTATGTTCTCCAGGTGATTCGTTCCTTCCA Rnf11; N4wbp2; Sid1669 mmu-miR-188 965 991 UGGGAGG---UGGUA-CG-UUCCCUAc ||: ||: ||||| || || |||| ACTGTCTGGAACCATAGCAAAAGGATa Rnf11; N4wbp2; Sid1669 mmu-miR-194 257 288 AGG---UGUA-CCUCAAC------GACAAUGU ||| |||| ||| ||| ||||||| TCCAGTACATAGGAATTGTGTAAAGTGTTACA Rnf11; N4wbp2; Sid1669 mmu-miR-19a 468 490 agUCAAAA--CGUAUCUAAACGUGU |||||| || | :|||||||| gtAGTTTTAAGCTT--GTTTGCACA Rnf11; N4wbp2; Sid1669 mmu-miR-19b 468 490 agUCAAAA--CGUACCUAAACGUGU |||||| || || |||||||| gtAGTTTTAAGCTTG--TTTGCACA Rnf11; N4wbp2; Sid1669 mmu-miR-201 986 1014 UCUUGUUACG----G---AAUGAC-UCAu ||:|:| ||| | |||||| ||| AGGATACTGCATCTCTTGTTACTGTAGTg Rnf11; N4wbp2; Sid1669 mmu-miR-207 1078 1102 cucccUCCUCU--CGGUCCUCUUCG ||| || | |||||||:|| ttgctAGGTGACTGACAGGAGAGGC Rnf11; N4wbp2; Sid1669 mmu-miR-212 1074 1094 cCGGCACUGACCUCUGACaau |:| || : || ||||| aGTCTTGCTAGGTGACTGaca Rnf11; N4wbp2; Sid1669 mmu-miR-218 83 106 uguaCC--AA-UCUAGUUCGUGUU || || |||||| |||||| attaGGAATTAAGATCATGCACAA Rnf11; N4wbp2; Sid1669 mmu-miR-24 49 70 gACAAGGACGAC-UUGACUCGGu || ||:| :|| |||||||| tTGATCTT-TTGTCACTGAGCCc Rnf11; N4wbp2; Sid1669 mmu-miR-291b-3p 662 685 cugUUUGUUUUAC-CUACGUGAaa ||:|||| || |||||||| tgtAAGCAAACTGAGATGCACTat Rnf11; N4wbp2; Sid1669 mmu-miR-292-3p 871 894 ugugAGUUUUG-GACCGCCGUGaa | ||||| ||:||||| tataTAAAAACGAAGGTGGCACca Rnf11; N4wbp2; Sid1669 mmu-miR-298 1209 1232 CCUUCUUGUCGGGA---GGAGACGg | |||||:| |:|| :|||||| GTAAGAATA-CTCTAAATCTCTGCa Rnf11; N4wbp2; Sid1669 mmu-miR-29a 29 48 UUGGCUAAAGUC--UACCACGAu |||| | |||| ||||| | AACC-A--TCAGTTTTGGTGGTt Rnf11; N4wbp2; Sid1669 mmu-miR-323 1252 1279 UCU---CCAG--C-UGGCACAUUACAcg ||| |||| | | ||||||||| AGAAATGGTCTAGTAAAGTGTAATGTtt Rnf11; N4wbp2; Sid1669 mmu-miR-330 557 579 agagaCGUCCGGGACACGAAacg || |||:|| ||||| ttgggGCTGGCTCTATGCTTgaa Rnf11; N4wbp2; Sid1669 mmu-miR-337 540 567 UUUC-CGUAGUA----UAUCCUCGACuu | || |:||:|| :| ||:|||| ATAGTGTATTATTATCGTTGGGGCTGgc Rnf11; N4wbp2; Sid1669 mmu-miR-339 64 83 ACUCGAGGACCUCCUGUCCCU ||||| | || | |||||| TGAGCCCAAAGA-GCCAGGGA Rnf11; N4wbp2; Sid1669 mmu-miR-346 546 568 ucuccguccGUGAGCCCGUCUGu |::| |||| |:| tattattatCGTTGGGGCTGGCt Rnf11; N4wbp2; Sid1669 mmu-miR-34a 971 997 uugUUGG--UCGAUU--CUGUGACGgu |||| ||| || ||:||||| tggAACCATAGCAAAAGGATACTGCat Rnf11; N4wbp2; Sid1669 mmu-miR-370 1110 1137 uugguccAAGGUG-GG----GUCGUCCg || ||| || ||||||| ttatgttTTGCACACCAATGCAGCAGGg Rnf11; N4wbp2; Sid1669 mmu-miR-377 1092 1113 UGUUUUCAACGGAAACACACUA |||::|| || ||||| || ACAGGAGAGGCAAATGTGTTAT Rnf11; N4wbp2; Sid1669 mmu-miR-378 698 721 ugugUCCUGGAC--CUCAGUCCUc | || :|| | ||||||| aagaATGAGTTGATGTGTCAGGAa Rnf11; N4wbp2; Sid1669 mmu-miR-410 1091 1116 uUGUC----CGGUAGACACAAUAUAA |||| | || ||||||||:|| gACAGGAGAGGCAAATGTGTTATGTT Rnf11; N4wbp2; Sid1669 mmu-miR-412 128 151 UGCCGA--UCACCUGGUCCACUUCA |:|||| || | : ||| ||||| ATGGCTGCAGATGTTGAGG-GAAGT Rnf11; N4wbp2; Sid1669 mmu-miR-422b 6 34 CCGGA----AGACUGAGGUUCA---GGUc ||:|| |||||||:||||| ||| GGTCTCTCGTCTGACTTCAAGTGAACCAt Rnf11; N4wbp2; Sid1669 mmu-miR-433-3p 877 898 UGUGGC-UCCUCGGGUAGUACUA | | || ||| | || |||||| AAAACGAAGGTG-GCACCATGAT Rnf11; N4wbp2; Sid1669 mmu-miR-449 975 997 UGG--UCGAUUGUUAUGUGACGgu ||| ||| || |: |:||||| ACCATAGC-AAAAGGATACTGCat Rnf11; N4wbp2; Sid1669 mmu-miR-450 967 987 AUAAUCCUUGUGUAGCGUUUUu |:| ||||| ||| |||||| TGTCTGGAAC-CATAGCAAAAg Rnf11; N4wbp2; Sid1669 mmu-miR-450b 712 736 auaAGUCC-UUG-UAUGA-CGUUUu ||||| ||| | :|| ||||| gtgTCAGGAAACAAGGCTAGCAAAg Rnf11; N4wbp2; Sid1669 mmu-miR-455-3p 542 568 UCACAU-AUACGGGCA--CCUGACgua |||||| ||| :||| ||:||| AGTGTATTATTATCGTTGGGGCTGgct Rnf11; N4wbp2; Sid1669 mmu-miR-469 1075 1103 ccugugGUUCUAGUUACU---UUCUCCGU | ||:| | ||| :||||||| gtcttgCTAGGTGACTGACAGGAGAGGCA Rnf11; N4wbp2; Sid1669 mmu-miR-488 539 561 aacUCUCACGAUAAUAG--ACCC || || :||||||| |||| aatAGTGTATTATTATCGTTGGG Rnf11; N4wbp2; Sid1669 mmu-miR-490 1302 1323 gucguaccuCAGGAGGUCCAac ||:|||||||| tttccttatGTTCTCCAGGTga Rnf11; N4wbp2; Sid1669 mmu-miR-491 946 967 ggaguaccuucccAAGGGGUGA ||||||||| tcctgtgacctctTTCCCCACT Rnf11; N4wbp2; Sid1669 mmu-miR-501 958 991 AAAGUGG-----GUCCCUG-------UUUCCUAa |||| || | || || ||||||| TTTCCCCACTGTCTGGAACCATAGCAAAAGGATa Rnf11; N4wbp2; Sid1669 mmu-miR-540 2 22 GGUCCUAGCUGG-AGACUGGA |||||:|| :| ||||||:| CCAGGGTCTCTCGTCTGACTT Rnf11; N4wbp2; Sid1669 mmu-miR-546 846 867 CU-GAGGC-----ACGGUGGUA || ||::| ||||||||| GAGCTTTGAATTATGCCACCAT Rnf11; N4wbp2; Sid1669 mmu-miR-551b 399 415 gUGACUUUGGUUCAUACCCAGc ||||| || | |||||| tACTGA---CA--TTTGGGTCa Rnf11; N4wbp2; Sid1669 mmu-miR-670 1120 1139 aaGUGGUGUAUGUGAGUCCCua ||||| ||:|| ||||| caCACCA-ATGCA-GCAGGGtt Rnf11; N4wbp2; Sid1669 mmu-miR-674 1324 1344 AUGUGGUGAGGGUAGAGUCACg | |::: ||:||| ||||||| TTCGTTCCTTCCA-CTCAGTGa Rnf11; N4wbp2; Sid1669 mmu-miR-677 40 67 AGUCUUC--GAUUAG----UAGUGACUu |::| :| :|:||| :||||||| TTGGTGGTTTTGATCTTTTGTCACTGAg Rnf11; N4wbp2; Sid1669 mmu-miR-678 652 678 gGAGG-UCAGGAA----CG--UGGCUCUg |||| || ||| || ||:|||| tCTCCTAG--CTTGTAAGCAAACTGAGAt Rnf11; N4wbp2; Sid1669 mmu-miR-680 123 143 GGGGGUACAGUCGUCUACggg ||: ||| | ||||||| CCTGGATGGCTGCAGATGttg Rnf11; N4wbp2; Sid1669 mmu-miR-681 1083 1104 UCGACGGACGGU-CGCUCCGac || || ||| || | ||||| AGGTGACTGACAGGAGAGGCaa Rnf11; N4wbp2; Sid1669 mmu-miR-682 1073 1095 GUCUGAAGUGA--CACUGAC-GUC ||| ||| :|| ||||||| ||| CAGTCTT-GCTAGGTGACTGACAG Rnf11; N4wbp2; Sid1669 mmu-miR-683 1115 1136 cuccuGUGUCG-AAUGUCGUCC |||| | |:||||||| ttttgCACACCAATGCAGCAGG Rnf11; N4wbp2; Sid1669 mmu-miR-686 960 980 AGAAGUGGCAGACCCUUCGUua || |||:|||| |||| || TCCCCACTGTCT-GGAACCAta Rnf11; N4wbp2; Sid1669 mmu-miR-691 613 634 AAAAGACGGAGAGAAGUCCUUa | |||||::| |:||||| TATTCTGTTTGCAGTTAGGAAa Rnf11; N4wbp2; Sid1669 mmu-miR-693-5p 115 134 cUUUUGAAAGCCUAC--ACCGAC |||| || | || |||||| tAAAAATTCC---TGGATGGCTG Rnf11; N4wbp2; Sid1669 mmu-miR-695 55 75 AAGUCAGUGGAUACGGGUUaga ||: |||| ||: |||||| TTTTGTCA-CTGAGCCCAAaga Rnf11; N4wbp2; Sid1669 mmu-miR-701 30 50 aGGUAGAUAAAGUCGCCGAuu ||||| :|||::|:||:| aCCATCAGTTTTGGTGGTTtt Rnf11; N4wbp2; Sid1669 mmu-miR-703 1226 1246 aAGAAAGGAAGACUUCCAAAa ||| |||||||||| || cTCTGCACTTCTGAAGGATTa Rnf11; N4wbp2; Sid1669 mmu-miR-705 359 378 acgggugggGUGGAGGGUGG | :|||||||| aataagtttCTTCTCCCACC Rnf11; N4wbp2; Sid1669 mmu-miR-708 1245 1267 AUCUUCGAGUGU--CAGAUCAac ||||:|: | | ||||||| TAGAGGTAGAAATGGTCTAGTaa Rnf11; N4wbp2; Sid1669 mmu-miR-709 953 973 aGGAGGA--CGGAGACGGAgg ||||:| || |||:|| aCCTCTTTCCCCACTGTCTgg Rnf11; N4wbp2; Sid1669 mmu-miR-712 1224 1244 ccauGGCGGGCCCACUUCCUc |:|| | ||||||| atctCTGCACTTCTGAAGGAt Rnf11; N4wbp2; Sid1669 mmu-miR-712 1074 1098 cCAUGGCGGGCC-C--ACU-UCCUC || ::||: || | ||| ||||| aGTCTTGCTAGGTGACTGACAGGAG Rnf11; N4wbp2; Sid1669 mmu-miR-717 1 20 ucucuUCCAUAGAGA-CAGACUc ||| :||||| |||||| --gccAGG-GTCTCTCGTCTGAc Rnf11; N4wbp2; Sid1669 mmu-miR-719 998 1021 uuGUAAAAAGACAU--CGGCUCUA | | || ||||| ||:|||:| ctCTTGTTACTGTAGTGCTGAGGT Rnf11; N4wbp2; Sid1669 mmu-miR-741 974 1003 gauGUAUC---UUAC-----CGUAGAGAgu ||||| || | |||||||| aacCATAGCAAAAGGATACTGCATCTCTtg Rnf11; N4wbp2; Sid1669 mmu-miR-742 27 51 aaaUGG--GUC-GUACCACCGAAAg ||| ||| : ||||||:||| tgaACCATCAGTTTTGGTGGTTTTg Rnf11; N4wbp2; Sid1669 mmu-miR-743 747 768 agauGAGUCGAAC-CACAGAAa ||: |||| ||||||| atccCTTTCCTTGTGTGTCTTa Rnf11; N4wbp2; Sid1669 mmu-miR-764-3p 636 657 uGUCAACGGUGAUACCGGAGGA ||| :||| :|| :||||| gCAGAATTCACAGTGATCTCCT Rnf11; N4wbp2; Sid1669 mmu-miR-801 1110 1137 cagcuAAGGCGUGCG----UGUCGUuag ||::|||| | :||||| ttatgTTTTGCACACCAATGCAGCAggg Rnf11; N4wbp2; Sid1669 mmu-miR-802 985 1010 UUCCU---ACUUAGA-AACAAUGACu ||||| || |||| ||||||||| AAGGATACTGCATCTCTTGTTACTGt

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf11 RAID00003304 mmu-miR-3081-5p miRNA MIMAT0014870 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00066995 mmu-miR-202-5p miRNA MIMAT0004546 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID00115327 mmu-miR-496a-3p miRNA MIMAT0003738 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID00161620 mmu-miR-491-5p miRNA MIMAT0003486 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID00182019 mmu-miR-7651-3p miRNA MIMAT0029805 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00206906 mmu-miR-1291 miRNA MIMAT0031397 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00212059 mmu-miR-466j miRNA MIMAT0005848 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID00222647 mmu-miR-30e-5p miRNA MIMAT0000248 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00247932 mmu-miR-6369 miRNA MIMAT0025113 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00274045 mmu-miR-340-5p miRNA MIMAT0004651 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6559 Rnf11 RAID00308479 mmu-miR-204-5p miRNA MIMAT0000237 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00329600 mmu-miR-384-3p miRNA MIMAT0001076 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6478 Rnf11 RAID00357943 mmu-miR-541-5p miRNA MIMAT0003170 Rnf11 mRNA 29864 NGS (Next Generation Sequencing) 0.5483 Rnf11 RAID00421194 mmu-miR-20a-3p miRNA MIMAT0004627 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00434984 mmu-miR-362-3p miRNA MIMAT0004684 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID00436895 mmu-miR-96-5p miRNA MIMAT0000541 Rnf11 mRNA 29864 CLIP-seq 0.5483 Rnf11 RAID00458209 mmu-miR-466h-5p miRNA MIMAT0004884 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID00474052 mmu-miR-154-5p miRNA MIMAT0000164 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6559 Rnf11 RAID00530751 mmu-miR-381-3p miRNA MIMAT0000746 Rnf11 mRNA 29864 CLIP-seq 0.5483 Rnf11 RAID00630151 mmu-miR-185-5p miRNA MIMAT0000214 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00675223 mmu-miR-5133 miRNA MIMAT0020644 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00693352 mmu-miR-7242-5p miRNA MIMAT0028452 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00714417 mmu-miR-551b-3p miRNA MIMAT0003890 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00735109 mmu-miR-592-5p miRNA MIMAT0003730 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID00757375 mmu-miR-721 miRNA MIMAT0003515 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6478 Rnf11 RAID00800412 mmu-miR-367-3p miRNA MIMAT0003181 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID00807410 mmu-miR-504-5p miRNA MIMAT0004889 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00829307 mmu-miR-101b-3p miRNA MIMAT0000616 Rnf11 mRNA 29864 Prediction 0.2381 Rnf11 RAID00866214 mmu-miR-3092-5p miRNA MIMAT0014905 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID00936581 mmu-miR-421-3p miRNA MIMAT0004869 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6478 Rnf11 RAID00948633 mmu-miR-505-3p miRNA MIMAT0003513 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID00956117 mmu-miR-34b-5p miRNA MIMAT0000382 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID00965633 mmu-miR-6540-5p miRNA MIMAT0025585 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID00968086 mmu-miR-129-5p miRNA MIMAT0000209 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6478 Rnf11 RAID00991529 mmu-miR-199a-5p miRNA MIMAT0000229 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6478 Rnf11 RAID01011020 mmu-miR-200a-3p miRNA MIMAT0000519 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01080884 mmu-miR-192-5p miRNA MIMAT0000517 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01099303 mmu-miR-669m-5p miRNA MIMAT0017346 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID01132523 mmu-miR-1188-5p miRNA MIMAT0005843 Rnf11 mRNA 29864 CLIP-seq 0.5483 Rnf11 RAID01192953 mmu-miR-7667-5p miRNA MIMAT0029840 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01226619 mmu-miR-6410 miRNA MIMAT0025163 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01311533 mmu-miR-19a-3p miRNA MIMAT0000651 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6559 Rnf11 RAID01318132 mmu-miR-329-3p miRNA MIMAT0000567 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID01326183 mmu-miR-124-3p miRNA MIMAT0000134 Rnf11 mRNA 29864 Prediction 0.2381 Rnf11 RAID01344935 mmu-miR-7092-5p miRNA MIMAT0028090 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01357891 mmu-miR-5124b miRNA MIMAT0025136 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01362012 mmu-miR-6946-5p miRNA MIMAT0027792 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01404158 mmu-miR-466m-5p miRNA MIMAT0014882 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID01404255 mmu-miR-369-3p miRNA MIMAT0003186 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID01416846 mmu-miR-539-3p miRNA MIMAT0017208 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID01448931 mmu-miR-669o-3p miRNA MIMAT0017347 Rnf11 mRNA 29864 CLIP-seq 0.5483 Rnf11 RAID01467425 mmu-miR-374c-5p miRNA MIMAT0014953 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID01471290 mmu-miR-223-3p miRNA MIMAT0000665 Rnf11 mRNA 29864 NGS (Next Generation Sequencing)//Prediction 0.6308 Rnf11 RAID01510794 mmu-miR-875-5p miRNA MIMAT0004937 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID01558737 mmu-miR-5624-3p miRNA MIMAT0022378 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01691331 mmu-miR-488-3p miRNA MIMAT0003450 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01717666 mmu-miR-374b-5p miRNA MIMAT0003727 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01724394 mmu-miR-6991-5p miRNA MIMAT0027884 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01743855 mmu-miR-30c-5p miRNA MIMAT0000514 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01773960 mmu-miR-32-5p miRNA MIMAT0000654 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID01792281 mmu-miR-500-5p miRNA MIMAT0017258 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01797050 mmu-miR-3085-5p miRNA MIMAT0014878 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01799208 mmu-miR-6361 miRNA MIMAT0025104 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01807344 mmu-miR-21a-5p miRNA MIMAT0000530 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID01822053 mmu-miR-1947-3p miRNA MIMAT0017343 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01840748 mmu-miR-706 miRNA MIMAT0003496 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01847468 mmu-miR-494-3p miRNA MIMAT0003182 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01853140 mmu-miR-433-3p miRNA MIMAT0001420 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01857126 mmu-miR-6378 miRNA MIMAT0025124 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01883305 mmu-miR-29b-1-5p miRNA MIMAT0004523 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01897801 mmu-miR-7003-5p miRNA MIMAT0027910 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01900466 mmu-miR-7239-5p miRNA MIMAT0028446 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID01954643 mmu-miR-199b-5p miRNA MIMAT0000672 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID01964406 mmu-miR-139-5p miRNA MIMAT0000656 Rnf11 mRNA 29864 Prediction 0.2381 Rnf11 RAID01974046 mmu-miR-669a-3-3p miRNA MIMAT0017251 Rnf11 mRNA 29864 CLIP-seq 0.5483 Rnf11 RAID02016779 mmu-miR-802-5p miRNA MIMAT0004188 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02024764 mmu-miR-590-5p miRNA MIMAT0004895 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02034804 mmu-miR-205-5p miRNA MIMAT0000238 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID02080842 mmu-miR-539-5p miRNA MIMAT0003169 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02098167 mmu-miR-670-3p miRNA MIMAT0017242 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02110880 mmu-miR-501-5p miRNA MIMAT0003508 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02132612 mmu-miR-8107 miRNA MIMAT0031412 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02140791 mmu-miR-344f-5p miRNA MIMAT0014931 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02153822 mmu-miR-92a-3p miRNA MIMAT0000539 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID02213601 mmu-miR-3618-3p miRNA MIMAT0035717 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02261223 mmu-miR-323-3p miRNA MIMAT0000551 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID02272134 mmu-miR-130b-3p miRNA MIMAT0000387 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID02357206 mmu-miR-883b-3p miRNA MIMAT0004851 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02360763 mmu-miR-186-5p miRNA MIMAT0000215 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6559 Rnf11 RAID02366613 mmu-miR-542-3p miRNA MIMAT0003172 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID02378522 mmu-miR-7658-3p miRNA MIMAT0029823 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02398325 mmu-miR-669n miRNA MIMAT0009427 Rnf11 mRNA 29864 CLIP-seq 0.5483 Rnf11 RAID02452081 mmu-miR-3063-5p miRNA MIMAT0014832 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02486745 mmu-miR-194-5p miRNA MIMAT0000224 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02495124 mmu-miR-30f miRNA MIMAT0025179 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02496836 mmu-miR-370-3p miRNA MIMAT0001095 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02515508 mmu-miR-674-5p miRNA MIMAT0003740 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02531775 mmu-miR-30b-5p miRNA MIMAT0000130 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02538495 mmu-miR-301b-3p miRNA MIMAT0004186 Rnf11 mRNA 29864 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 Rnf11 RAID02541257 mmu-miR-215-5p miRNA MIMAT0000904 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02574572 mmu-miR-370-5p miRNA MIMAT0017174 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02610715 mmu-miR-449b miRNA MIMAT0005447 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID02647627 mmu-miR-6415 miRNA MIMAT0025169 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02686899 mmu-miR-669a-3p miRNA MIMAT0017243 Rnf11 mRNA 29864 CLIP-seq 0.5483 Rnf11 RAID02691948 mmu-miR-138-5p miRNA MIMAT0000150 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02693755 mmu-miR-6413 miRNA MIMAT0025166 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID02694169 mmu-miR-211-5p miRNA MIMAT0000668 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02698999 mmu-miR-320-3p miRNA MIMAT0000666 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02720635 mmu-miR-669k-5p miRNA MIMAT0017323 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02728682 mmu-miR-130a-3p miRNA MIMAT0000141 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID02741609 mmu-miR-7231-5p miRNA MIMAT0028430 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02753924 mmu-miR-490-3p miRNA MIMAT0003780 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02768614 mmu-miR-6954-3p miRNA MIMAT0027809 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02844060 mmu-miR-19b-3p miRNA MIMAT0000513 Rnf11 mRNA 29864 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7439 Rnf11 RAID02914660 mmu-miR-92b-3p miRNA MIMAT0004899 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID02949465 mmu-miR-181b-1-3p miRNA MIMAT0017067 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID02975013 mmu-miR-363-3p miRNA MIMAT0000708 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID02981445 mmu-miR-466l-3p miRNA MIMAT0005830 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID02994756 mmu-miR-28a-3p miRNA MIMAT0004661 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03046236 mmu-miR-301a-3p miRNA MIMAT0000379 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID03052505 mmu-miR-208a-5p miRNA MIMAT0017014 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03137835 mmu-miR-181b-2-3p miRNA MIMAT0017084 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03158822 mmu-miR-384-5p miRNA MIMAT0004745 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03227185 mmu-miR-1898 miRNA MIMAT0007875 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03233250 mmu-miR-3473d miRNA MIMAT0020632 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03268507 mmu-miR-100-3p miRNA MIMAT0017051 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03281855 mmu-miR-149-5p miRNA MIMAT0000159 Rnf11 mRNA 29864 Prediction 0.2381 Rnf11 RAID03294803 mmu-miR-883a-3p miRNA MIMAT0004849 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03300139 mmu-miR-7053-5p miRNA MIMAT0028010 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03306975 mmu-miR-7015-5p miRNA MIMAT0027934 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03315153 mmu-miR-141-3p miRNA MIMAT0000153 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03342634 mmu-miR-34c-5p miRNA MIMAT0000381 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID03344822 mmu-miR-6953-3p miRNA MIMAT0027807 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03388266 mmu-miR-760-3p miRNA MIMAT0003898 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03403537 mmu-miR-669c-3p miRNA MIMAT0017253 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03414421 mmu-miR-146b-5p miRNA MIMAT0003475 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03469059 mmu-miR-30a-5p miRNA MIMAT0000128 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03483900 mmu-miR-24-3p miRNA MIMAT0000219 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID03495417 mmu-miR-3102-5p miRNA MIMAT0014933 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03520626 mmu-miR-30d-5p miRNA MIMAT0000515 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03524801 mmu-miR-208b-5p miRNA MIMAT0017280 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03541012 mmu-miR-33-5p miRNA MIMAT0000667 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03574081 mmu-miR-702-5p miRNA MIMAT0022931 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03671196 mmu-miR-449a-5p miRNA MIMAT0001542 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID03698136 mmu-miR-6420 miRNA MIMAT0025176 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03734789 mmu-miR-7044-3p miRNA MIMAT0027993 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03747760 mmu-miR-546 miRNA MIMAT0003166 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03786223 mmu-miR-25-3p miRNA MIMAT0000652 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID03821188 mmu-miR-7059-3p miRNA MIMAT0028023 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03851977 mmu-miR-9-5p miRNA MIMAT0000142 Rnf11 mRNA 29864 Prediction 0.2202 Rnf11 RAID03852794 mmu-miR-544-3p miRNA MIMAT0004941 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID03896948 mmu-miR-31-5p miRNA MIMAT0000538 Rnf11 mRNA 29864 CLIP-seq//Prediction 0.6308 Rnf11 RAID03938099 mmu-miR-7007-3p miRNA MIMAT0027919 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03957413 mmu-miR-218-2-3p miRNA MIMAT0005444 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID03971509 mmu-miR-543-3p miRNA MIMAT0003168 Rnf11 mRNA 29864 Prediction 0.1828 Rnf11 RAID04238158 G730013B05Rik lncRNA 619312 Rnf11 protein 29864 Microarray//RNA-seq 0.6606