DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004523 mmu-miR-29b* 70160 Vps36 auUUGGUGGUAUACUUUGGUcg || | ||| || |||||| auAAAC-CCAAAU-AAACCAag 3 21 74 93 [mm9:8:23329038-23329057:+] 0.5710 136 0 -12.16 -0.1068 MIMAT0000377 mmu-miR-299* 70160 Vps36 uacauacacccugccAUUUGGu |||||| agagauaaacccaaaUAAACCa 2 8 70 91 [mm9:8:23329034-23329055:+] 0.5710 120 6 -7.21 -0.3652 MIMAT0000378 mmu-miR-300 70160 Vps36 cuucucucgaacggGAACGUAu ||||||| uuuaugucaauaagCUUGCAUu 2 9 21 42 [mm9:8:23328985-23329006:+] 0.5777 140 7 -9.83 -0.6348 MIMAT0004640 mmu-miR-325 70160 Vps36 aacuauccuccACGAGUUAUUu || ||||||| gaaaugcuuuaUG-UCAAUAAg 2 12 14 34 [mm9:8:23328978-23328998:+] 0.5777 141 7 -7.27 -0.5917 MIMAT0002111 mmu-miR-470 70160 Vps36 ugaguggucacggucaGGUUCUu |||||| gauaaacccaaauaaaCCAAGAa 2 8 73 95 [mm9:8:23329037-23329059:+] 0.5710 120 6 -13.26 -0.4362 MIMAT0007871 mmu-miR-1892 70160 Vps36 uaggagggagggcagGGGUUUa |||||| gagcuaagagauaaaCCCAAAu 2 8 64 85 [mm9:8:23329028-23329049:+] 0.5710 120 6 -10.69 -0.2011 MIMAT0011210 mmu-miR-2134 70160 Vps36 cguggggcaaagGGUUCUg |||||| aacccaaauaaaCCAAGAa 2 8 77 95 [mm9:8:23329041-23329059:+] 0.5710 120 6 -16.30 -0.4233 MIMAT0000210 mmu-miR-181a 70160 Vps36 ugaguggcugucgcaaCUUACAa |||||| aacccaaauaaaccaaGAAUGUg 2 8 77 99 [mm9:8:23329041-23329063:+] 0.5568 120 6 -7.80 -0.2779 MIMAT0000211 mmu-miR-182 70160 Vps36 gccacACUCAAGAUG-GUAACGGUUu | || | |:| : ||||||| gucaaUAAGCU-UGCAUUUUGCCAAg 2 21 26 50 [mm9:8:23328990-23329014:+] 0.5777 145 7 -13.19 -0.7589 MIMAT0000530 mmu-miR-21 70160 Vps36 aguUGUAGU-CAGACUAUUCGAu :| |:| ||| ||||||| aauGCUUUAUGUC-AAUAAGCUu 2 20 16 37 [mm9:8:23328980-23329001:+] 0.5777 148 7 -10.25 -0.9886 MIMAT0000673 mmu-miR-181b 70160 Vps36 uggguggcugucguuaCUUACAa |||||| aacccaaauaaaccaaGAAUGUg 2 8 77 99 [mm9:8:23329041-23329063:+] 0.5568 120 6 -15.83 -0.2779 MIMAT0000674 mmu-miR-181c 70160 Vps36 ugaguggcuguccaaCUUACAa |||||| acccaaauaaaccaaGAAUGUg 2 8 78 99 [mm9:8:23329042-23329063:+] 0.5568 120 6 -6.33 -0.2779 MIMAT0003168 mmu-miR-543 70160 Vps36 uucUUCACGUGGCGCUUACAaa || | ||| |||||| cccAAAUAAACCAAGAAUGUgu 3 20 79 100 [mm9:8:23329043-23329064:+] 0.5568 135 0 -10.17 -0.1413 MIMAT0004324 mmu-miR-181d 70160 Vps36 ugGGUGGCUGUUGUUACUUACAa ||| | ||| | |||||| acCCAAAUA-AACCAAGAAUGUg 2 22 78 99 [mm9:8:23329042-23329063:+] 0.5568 127 6 -15.07 -0.2755 MIMAT0004895 mmu-miR-590-5p 70160 Vps36 gacGUGAAA-AUACUUAUUCGAg ::|||| |:| |||||||| aaaUGCUUUAUGUCAAUAAGCUu 2 20 15 37 [mm9:8:23328979-23329001:+] 0.5777 166 7 -13.92 -0.9826

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G039093 Vps36 Mus musculus 70160

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Vps36 mmu-miR-590-5p beg:18 end:38 pic:3' GACGTGAAAATAC--TTATTCGAG 5'& || |||||| ||||||||. &5' --GC---TTTATGTCAATAAGCTT 3' Vps36 mcmv-miR-M44-1 beg:58 end:77 pic:3' TGGCGCCGAGACCTTTTTCTAT 5'& ||.| ||| ||.||||| &5' ACTGA-GCT-----AAGAGATA 3' Vps36 mmu-miR-130a beg:21 end:43 pic:3' TACGGGAAAATTGTAACGTGAC 5'& |||.| |.| |||||.| &5' ATGTCAATA-AGC-TTGCATT- 3' Vps36 mmu-miR-182 beg:33 end:50 pic:3' GCCACACTCAAGATGGT-AACGGTTT 5'& .|.| |||||||. &5' -----------TTGCATTTTGCCAAG 3' Vps36 mmu-miR-2134 beg:75 end:95 pic:3' CGTGGGGCAAAG-GGTTCTG 5'& |||| |||||| &5' --ACCCAAATAAACCAAGA- 3' Vps36 mmu-miR-24 beg:47 end:70 pic:3' GACAAGGACGACTTGACTCGGT 5'& | ||. | |||||||.| &5' --GGTCTCACGACACTGAGCTA 3' Vps36 mmu-miR-26b beg:2 end:23 pic:3' TGGATA-GGACTTAATGAACTT 5'& ..|.| |||||| |.||| &5' -TTTGTACCTGAAATGCTT--- 3' Vps36 mmu-miR-29bstar beg:82 end:104 pic:3' ATTTGGTGG-TATACTTTGGTCG 5'& ||||||| ||.|| ..|| &5' TAAACCAAGAATGTG---TTAG- 3' Vps36 mmu-miR-301b beg:22 end:43 pic:3' CGAAACTGTTATGGTAACGTGAC 5'& || ||||| |||||.| &5' ----TGTCAATAAGCTTGCATT- 3' Vps36 mmu-miR-31 beg:31 end:48 pic:3' GTCGATACGGTCGTAGAACGGA 5'& ||. ||||.||||| &5' -------GCTTGCATTTTGCC- 3' Vps36 mmu-miR-872 beg:59 end:81 pic:3' GGACTTGATTGTTCA-TTGGAA 5'& ||||.|||| |. |||| &5' -CTGAGCTAAGAGATAAACC-- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Vps36 mmu-miR-106a 8 47 -AUGGACG---UGACAAU-------------CGUGAAAC- |||||| :|| ||| |||:|||| GUACCUGAAAUGCU-UUAUGUCAAUAAGCUUGCAUUUUGC Vps36 mmu-miR-138 53 70 CUAAGUGUUGUGG-UCGA- ||||:||||: |||| --CUCACGACACUGAGCUA Vps36 mmu-miR-149 49 74 -CCUCACUUCUGUGCCUCGG-UCU- || ||||| ||||: ||| AGGUCUCACGACACUGAGCUAAGAG Vps36 mmu-miR-152 45 67 GGGUUCAAGACAGUAC-GUGACU- ||||| || ||| | |||||| GCCAAGGUC--UCACGACACUGAG Vps36 mmu-miR-17-5p 8 47 UGAUGGACG---UGACAUU------------CGUGAAAC- |||||| :|| || |||:|||| -GUACCUGAAAUGCUUUAUGUCAAUAAGCUUGCAUUUUGC Vps36 mmu-miR-181d 76 100 -UUGGGUGGCUGUUGUUACUUACAA |||||| ||| |||||| AAACCCAAAUA-AACCAAGAAUGUG Vps36 mmu-miR-182 24 52 -ACACUCAA--GAUGGUA--ACGGUUU- ||| || ||| ||||||: AUGUCAAUAAGCUUGCAUUUUGCCAAGG Vps36 mmu-miR-199a 49 66 CUUGUCCAUCAGAC--UUGUGACCC :|||| :|||||| -------AGGUCUCACGACACUGA- Vps36 mmu-miR-199b 49 66 CUUGUCCAUCAGAU--UUGUGACCC :|||| :|||||| -------AGGUCUCACGACACUGA- Vps36 mmu-miR-210 44 66 AGUCGGCGACAGUGUGC-GUGUC- ||| ||| |||| ||| | --UGCCAAGGUCUCACGACACUGA Vps36 mmu-miR-24 40 71 GACAAGGACGA--CU---------UGACUCGGU- |::||| |: |||||||:| ---AUUUUGCCAAGGUCUCACGACACUGAGCUAA Vps36 mmu-miR-292-3p 37 59 -UGUGAGUUUUGGA-CCGCCGUGAA :||:|: :|| ||: ||| UGCAUUUU--GCCAAGGUCUCACG- Vps36 mmu-miR-301b 17 44 -ACGAA--ACUGUUAUGGUAACGUGAC ||||| || ||||| |||||:| AUGCUUUAUGUCAAUAAGCUUGCAUUU Vps36 mmu-miR-31 18 49 GUCGA--UACGGU--------CGUAGAACGGA ||| |||:|| ||||:||||| -UGCUUUAUGUCAAUAAGCUUGCAUUUUGCCA Vps36 mmu-miR-423 49 70 GACUCCCCGGAGU-CUGG--CUCGA- ||:|||| ||| ||||| -----AGGUCUCACGACACUGAGCUA Vps36 mmu-miR-449 44 71 -UGG-UCGAUUGUUAUGUGA--CGGU- :|| || | || ||||| ||:| UGCCAAGGUCUCACGACACUGAGCUAA Vps36 mmu-miR-678 45 69 GGAGG--UCAGGAA-C-GUGGCUCUG- || :|||: | |||:||| | --GCCAAGGUCUCACGACACUGAG-CU Vps36 mmu-miR-699 44 70 GCUCGG-UCCAGCGUGA-------CGGA ||| ||||| ||| ||: --UGCCAAGGUCUCACGACACUGAGCUA Vps36 mmu-miR-759 25 48 -CAGUUUUAACAAACGUGAGACG- ||||| |||||:|:||| UGUCAAUAAGC-UUGCAUUUUGCC Vps36 mmu-miR-764-3p 37 57 -UGUC-AACGGUGAUACCGGAGGA :|| |||||| ||:||| UGCAUUUUGCCAA---GGUCUCA- Vps36 mmu-miR-770-3p 10 41 -GGU-----CGAGGUGCAGUC---CGGGUGC || |||::|:|||| ||:::| ACCUGAAAUGCUUUAUGUCAAUAAGCUUGCA Vps36 mmu-miR-182 43 50 ACACUCAA--------------------GAUGGU-AACGGUUU :|:| |||||||: GUACCUGAAAUGCUUUAUGUCAAUAAGCUUGCAUUUUGCCAAGG Vps36 mmu-miR-106a 9 45 AUGGACGUGAC--AAU-------------CGUGAAAC |||||| | || ||| |||:|||| TACCTGAAATGCTTTATGTCAATAAGCTTGCATTTTG Vps36 mmu-miR-138 50 68 CUA-AGUGUUGUGG-UCGA |:| ||||:||||: |||| GGTCTCACGACACTGAGCT Vps36 mmu-miR-149 50 71 CCUCACUUCUGUGCCUCGGUcu || | | ||||| ||||:| GGTCTCACGACACTGAGCTAag Vps36 mmu-miR-17-5p 7 45 ugAUGGACGUGAC-----------AUU----CGUGAAAC |||||| | || ||| |||:|||| tgTACCTGAAATGCTTTATGTCAATAAGCTTGCATTTTG Vps36 mmu-miR-181d 77 99 UUGGGUGGCUGUUGUUACUUACAa |||||| | ||| | |||||| AACCCAAATA-AACCAAGAATGTg Vps36 mmu-miR-199a 44 66 cuuGUCCAUCAGACU--UGUGACcc || | |||| | |||||| tgcCAAG--GTCTCACGACACTGag Vps36 mmu-miR-199b 44 66 cuuGUCCAUCAGAUU--UGUGACcc || | |||| | |||||| tgcCAAG--GTCTCACGACACTGag Vps36 mmu-miR-210 42 64 AGUCGGCGACAGUGUGC-GUGuc |: ||| ||| |||| ||| TTTGCCAAGGTCTCACGACACtg Vps36 mmu-miR-24 48 69 gaCAAGGACGACU-UGACUCGGU | ||: | || |||||||:| aaGGTCTCAC-GACACTGAGCTA Vps36 mmu-miR-292-3p 42 64 ugugaGUUUUGGACCGCCGUGAa |||:::|| || |||| tttgcCAAGGTCTCACGACACTg Vps36 mmu-miR-301b 18 43 ACGAA--ACUGUUAUGGUAACGUGAc ||||| || ||||| |||||:| TGCTTTATGTCAATAAGCTTGCATTt Vps36 mmu-miR-31 27 48 gucgAUACGGUCGUAGAACGGa || ||: ||||:||||| tcaaTAAGCTTGCATTTTGCCa Vps36 mmu-miR-423 44 68 gacuccCCGGAGU-C--UGGCUCGA ||:|||| | ||:||||| tgccaaGGTCTCACGACACTGAGCT Vps36 mmu-miR-449 45 67 uGG-UCGAUUGUUAUGUGACggu || || | || |||||| gCCAAGGTCTCACGACACTGagc Vps36 mmu-miR-678 43 68 ggaGGU--CAG-GAAC-GUGGCUCug ||| ||| | | |||:||| ttgCCAAGGTCTCACGACACTGAGct Vps36 mmu-miR-699 42 67 gcuCGG-UCCA----GC-GUGACgga ||| |||| || ||||| tttGCCAAGGTCTCACGACACTGagc Vps36 mmu-miR-759 26 46 CAGUUUUAACAAACGUGAGACG ||||| | | |||||:|:||| GTCAATA-AGCTTGCATTTTGC Vps36 mmu-miR-764-3p 39 57 ugucAACGGUGAUACCGGAGga |||||| | ||:||| cattTTGCCA--A-GGTCTCac Vps36 mmu-miR-770-3p 31 58 ggUCGAG-GU---GCAG-UCC-GGGUGC ||||: || :| | ||| |:|||| taAGCTTGCATTTTGCCAAGGTCTCACG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Vps36 RAID00170549 mmu-miR-181a-5p miRNA MIMAT0000210 Vps36 mRNA 70160 Prediction 0.1828 Vps36 RAID00316767 mmu-miR-182-5p miRNA MIMAT0000211 Vps36 mRNA 70160 Prediction 0.2202 Vps36 RAID00462306 mmu-miR-181c-5p miRNA MIMAT0000674 Vps36 mRNA 70160 Prediction 0.1828 Vps36 RAID00875982 mmu-miR-543-3p miRNA MIMAT0003168 Vps36 mRNA 70160 Prediction 0.1828 Vps36 RAID01766603 mmu-miR-29c-3p miRNA MIMAT0000536 Vps36 mRNA 70160 Prediction 0.1828 Vps36 RAID01897616 mmu-miR-181d-5p miRNA MIMAT0004324 Vps36 mRNA 70160 Prediction 0.1828 Vps36 RAID01959620 mmu-miR-212-5p miRNA MIMAT0017053 Vps36 mRNA 70160 Prediction 0.1828 Vps36 RAID02691863 mmu-miR-5112 miRNA MIMAT0020620 Vps36 mRNA 70160 Prediction 0.1828 Vps36 RAID02703604 mmu-miR-21a-5p miRNA MIMAT0000530 Vps36 mRNA 70160 Prediction 0.1828 Vps36 RAID02745873 mmu-miR-181b-5p miRNA MIMAT0000673 Vps36 mRNA 70160 Prediction 0.1828 Vps36 RAID02929084 mmu-miR-590-5p miRNA MIMAT0004895 Vps36 mRNA 70160 Prediction 0.1828 Vps36 RAID03328180 mmu-miR-542-3p miRNA MIMAT0003172 Vps36 mRNA 70160 Prediction 0.1828