DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Cish; Cis ATTTA 327-1100 1585-1589;1589-1593;1593-1597 Identification of TTP mRNA targets in human dendritic cells#RNA 2008; 14(5): 888-902.!Novel mRNA targets for tristetraprolin (TTP) identified by global#Mol Cell Biol 2006; 26(24): 9196-208.! Cish; Cis TTATTTATT 327-1100 1587-1595;1591-1599 Identification of TTP mRNA targets in human dendritic cells#RNA 2008; 14(5): 888-902.!Novel mRNA targets for tristetraprolin (TTP) identified by global#Mol Cell Biol 2006; 26(24): 9196-208.! Cish; Cis WTATTTATW 327-1100 1587-1595;1591-1599 Identification of TTP mRNA targets in human dendritic cells#RNA 2008; 14(5): 888-902.!Novel mRNA targets for tristetraprolin (TTP) identified by global#Mol Cell Biol 2006; 26(24): 9196-208.! Cish; Cis WWATTTAWW 327-1100 1587-1595;1591-1599 Identification of TTP mRNA targets in human dendritic cells#RNA 2008; 14(5): 888-902.!Novel mRNA targets for tristetraprolin (TTP) identified by global#Mol Cell Biol 2006; 26(24): 9196-208.! Cish; Cis WWTATTTATWW 327-1100 1586-1596 Identification of TTP mRNA targets in human dendritic cells#RNA 2008; 14(5): 888-902.!Novel mRNA targets for tristetraprolin (TTP) identified by global#Mol Cell Biol 2006; 26(24): 9196-208.! Cish; Cis WWWATTTAWWW 327-1100 1586-1596 Identification of TTP mRNA targets in human dendritic cells#RNA 2008; 14(5): 888-902.!Novel mRNA targets for tristetraprolin (TTP) identified by global#Mol Cell Biol 2006; 26(24): 9196-208.! Cish; Cis WWWTATTTATWWW 327-1100 1585-1597 Identification of TTP mRNA targets in human dendritic cells#RNA 2008; 14(5): 888-902.!Novel mRNA targets for tristetraprolin (TTP) identified by global#Mol Cell Biol 2006; 26(24): 9196-208.! Cish; Cis WWWWATTTAWWWW 327-1100 1585-1597 Identification of TTP mRNA targets in human dendritic cells#RNA 2008; 14(5): 888-902.!Novel mRNA targets for tristetraprolin (TTP) identified by global#Mol Cell Biol 2006; 26(24): 9196-208.!

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 12700 Cish cguucCGUCAC-CGG-ACAU-GUCa |::||| ||| |||| ||| ucuuuGUGGUGAGCCAUGUAUCAGa 2 18 212 236 [mm9:9:107203443-107203467:+] 0.5627 123 0 -18.40 -0.1915 MIMAT0004524 mmu-miR-30b* 12700 Cish cuGCAUUUGUAGGUGUAGGGUc :||::| | || ||||||| ccUGUGGAGACCCCCAUCCCAa 2 21 597 618 [mm9:9:107203828-107203849:+] 0.6121 164 7 -19.73 -0.3438 MIMAT0004527 mmu-miR-124* 12700 Cish uaguuccaggcgacaCUUGUGc |||||| agaaaacaaguguuaGAACACa 2 8 970 991 [mm9:9:107204201-107204222:+] 0.6108 120 6 -12.88 -0.1514 MIMAT0004545 mmu-miR-200b* 12700 Cish agGUUACGACGGGUCAUU-CUAc ::|| :| ::| |||| ||| acUGAUUUUUUUCUGUAAUGAUa 2 21 1018 1040 [mm9:9:107204249-107204271:+] 0.5807 120 0 -9.41 -1.1506 MIMAT0000375 mmu-miR-297a 12700 Cish uguacguguacgUGUGUAUGUa |:||||||| agagagggagaaAUACAUACAc 2 11 933 954 [mm9:9:107204164-107204185:+] 0.6108 146 7 -11.08 -0.8224 MIMAT0004616 mmu-miR-30c-1* 12700 Cish ccucauuUGUUGGGAGAGGGUc || :::||||||| ugugcccACUUUUUUCUCCCAa 2 16 677 698 [mm9:9:107203908-107203929:+] 0.5709 147 7 -16.78 -0.7210 MIMAT0004616 mmu-miR-30c-1* 12700 Cish ccucauuuguuggGAGAGGGUc :||||||| ugaacugugucuaUUCUCCCAg 2 10 311 332 [mm9:9:107203542-107203563:+] 0.5784 141 7 -19.33 -0.3731 MIMAT0005438 mmu-miR-30c-2* 12700 Cish ucucauuUGUCGGAAGAGGGUc || ::|||||||| ugugcccACUUUUUUCUCCCAa 2 16 677 698 [mm9:9:107203908-107203929:+] 0.5709 151 7 -16.26 -0.7210 MIMAT0005438 mmu-miR-30c-2* 12700 Cish ucucAUUUGUC---GG-AAGAGGGUc |:||| | |: |||||||| caccUGAACUGUGUCUAUUCUCCCAg 2 19 307 332 [mm9:9:107203538-107203563:+] 0.5784 148 7 -22.32 -0.3761 MIMAT0004631 mmu-miR-29a* 12700 Cish gacuuguGGUUUUCUU-UAGUCa |::::|||| ||||| ccuguuuCUGGGAGAAUAUCAGc 2 16 392 414 [mm9:9:107203623-107203645:+] 0.5860 123 0 -16.23 -0.2743 MIMAT0004635 mmu-miR-92a* 12700 Cish cauuacggugguuaGGGGUGGa ||||||| uucucuauguugugCCCCACCu 2 9 801 822 [mm9:9:107204032-107204053:+] 0.5709 140 7 -19.73 -0.2206 MIMAT0000551 mmu-miR-323-3p 12700 Cish ucuccagcuggcACAUUACac ||||||| cugauuuuuuucUGUAAUGau 3 10 1019 1039 [mm9:9:107204250-107204270:+] 0.5807 125 0 -7.22 -0.1038 MIMAT0004664 mmu-miR-214* 12700 Cish cgUGUCGU-UCACAUCUGUCCGu ::| || || | |||||||| auGUAUCAGAGCG-AGACAGGCa 2 21 227 248 [mm9:9:107203458-107203479:+] 0.5784 153 7 -23.24 -0.4971 MIMAT0004666 mmu-miR-33* 12700 Cish cacuacgugacaccUUUGUAAc ||||||| agacccccaucccaAAACAUUg 2 9 604 625 [mm9:9:107203835-107203856:+] 0.6121 140 7 -8.39 -0.2843 MIMAT0002108 mmu-miR-467a-1* 12700 Cish cacauccacacacaUACAUAUa ||||||| caggcccccuacccAUGUAUAg 2 9 361 382 [mm9:9:107203592-107203613:+] 0.5784 140 7 -6.24 -0.1319 MIMAT0002109 mmu-miR-468 12700 Cish guCUGUGUGCGUGUAGUCAGUAu | ::: | : | |||||||| cuGCUGUCCUUUCUUCAGUCAUc 2 22 76 98 [mm9:9:107203307-107203329:+] 0.5350 149 7 -10.15 -0.2707 MIMAT0003127 mmu-miR-484 12700 Cish uagcccuccccugaCUCGGACu ||||||| auguauagaauagcGAGCCUGu 2 9 375 396 [mm9:9:107203606-107203627:+] 0.5822 140 7 -13.73 -0.3808 MIMAT0003733 mmu-miR-665 12700 Cish ucccuGGAGUCGG-AGGACCa |:||||:| |||||| ccuuuCUUCAGUCAUCCUGGu 2 16 83 103 [mm9:9:107203314-107203334:+] 0.5350 131 6 -25.77 -0.1006 MIMAT0004822 mmu-miR-770-5p 12700 Cish gcACCGGGUCUGUGCACC-ACGa ||| :|:|: | |||| ||| gcUGGGUCGGG-AAGUGGAUGCu 2 21 846 867 [mm9:9:107204077-107204098:+] 0.5709 122 0 -25.12 -0.1469 MIMAT0003892 mmu-miR-762 12700 Cish cgAGACAGG-GCCGGGGUCGGGg | ||||: : :|||||||| acUGUGUCUAUUCUCCCAGCCCu 2 21 314 336 [mm9:9:107203545-107203567:+] 0.5784 155 7 -31.34 -0.2846 MIMAT0003451 mmu-miR-677 12700 Cish agUCUUCGAUUAGUA-GUGACUu :|:||:| || | |||||| uuGGGAGUUUUUCUUCCACUGAu 2 21 1001 1023 [mm9:9:107204232-107204254:+] 0.6108 128 6 -17.44 -1.0169 MIMAT0003455 mmu-miR-679 12700 Cish ugguucucaGUGGAGUGUCAGg | :| ||||||| ccugcucugCCUCACACAGUCa 2 14 14 35 [mm9:9:107203245-107203266:+] 0.5575 145 7 -16.77 -0.8930 MIMAT0003462 mmu-miR-684 12700 Cish aacugaacuuccCUUUUGa |||||| aacaagacuuuaGAAAACa 2 8 959 977 [mm9:9:107204190-107204208:+] 0.6108 120 6 -8.55 -0.1353 MIMAT0003468 mmu-miR-689 12700 Cish ccuggGGCGGCUCGCCCCUGc || |: | ||||||| caaggCCCCUUA-CGGGGACg 2 17 431 450 [mm9:9:107203662-107203681:+] 0.5860 146 7 -30.76 -0.1513 MIMAT0003478 mmu-miR-467b* 12700 Cish cacaaccacacacaUACAUAUa ||||||| caggcccccuacccAUGUAUAg 2 9 361 382 [mm9:9:107203592-107203613:+] 0.5784 140 7 -5.82 -0.1319 MIMAT0003480 mmu-miR-297b-5p 12700 Cish uguacaaguacgUGUGUAUGUa |:||||||| agagagggagaaAUACAUACAc 2 11 933 954 [mm9:9:107204164-107204185:+] 0.6108 146 7 -11.08 -0.8295 MIMAT0003484 mmu-miR-720 12700 Cish accuccggggUCGCUCUa ||||||| cauguaucagAGCGAGAc 2 9 226 243 [mm9:9:107203457-107203474:+] 0.5784 140 7 -14.02 -0.1820 MIMAT0003487 mmu-miR-697 12700 Cish agAGGUGUCCUGGU-CCUACAa ||||| | :| |||||| caUCCACCUGUGUAUGGAUGUg 2 20 659 680 [mm9:9:107203890-107203911:+] 0.5915 123 6 -17.86 -0.2312 MIMAT0003495 mmu-miR-705 12700 Cish acGGGUGGGGUGGAGG-GUGg |||||:|: :|||| ||| cuCCCACUCU-UCUCCUCACa 2 19 752 771 [mm9:9:107203983-107204002:+] 0.5709 128 0 -27.51 -0.2506 MIMAT0003495 mmu-miR-705 12700 Cish acgggUGGGGUGGAG-GGUGg |||:|::||| |||| gcaggACCUCGUCUCUCCACa 2 16 246 266 [mm9:9:107203477-107203497:+] 0.5784 127 0 -25.49 -0.1766 MIMAT0003496 mmu-miR-706 12700 Cish aaaaaacUCUGUCCCAAAGAGa || | |||||||| uucucccAGCCCUGGUUUCUCa 2 16 324 345 [mm9:9:107203555-107203576:+] 0.5784 151 7 -13.41 -0.2486 MIMAT0003499 mmu-miR-709 12700 Cish aggaGGACGGAGACGGAGg |||| ||||||||| gcacCCUG-CUCUGCCUCa 2 16 10 27 [mm9:9:107203241-107203258:+] 0.5575 161 7 -27.62 -0.7491 MIMAT0003500 mmu-miR-710 12700 Cish gaGU-UGAGAGGG--GUUCUGAAcc || || | ||: |||||||| uaCAUACACACCUAACAAGACUUua 3 21 946 970 [mm9:9:107204177-107204201:+] 0.6108 138 0 -14.10 -0.1180 MIMAT0003505 mmu-miR-714 12700 Cish cgCUGGCUGGCCGGGAGCAGc ||| |:| || ||||||| gaGACAGGCAGGACCUCGUCu 2 20 239 259 [mm9:9:107203470-107203490:+] 0.5784 167 7 -23.08 -0.1976 MIMAT0004842 mmu-miR-879 12700 Cish ccgaaucucgauaUUCGGAGa ||||||| acuuuuuucucccAAGCCUCu 2 9 684 704 [mm9:9:107203915-107203935:+] 0.5709 140 7 -14.80 -0.2881 MIMAT0004846 mmu-miR-881 12700 Cish agauaAGUCUUUUCUGUGUCAa | :|::| ||||||| ugggcUAGGGGACUACACAGUu 2 18 456 477 [mm9:9:107203687-107203708:+] 0.6333 149 7 -15.38 -0.7513 MIMAT0004846 mmu-miR-881 12700 Cish agauaagucuuuucUGUGUCAa ||||||| cccugcucugccucACACAGUc 2 9 13 34 [mm9:9:107203244-107203265:+] 0.5575 140 7 -12.28 -0.5644 MIMAT0004850 mmu-miR-883b-5p 12700 Cish acugacgauggguAAGAGUCAu |||||||| ucccagcccugguUUCUCAGUc 2 10 327 348 [mm9:9:107203558-107203579:+] 0.5784 145 7 -16.51 -0.1462 MIMAT0004850 mmu-miR-883b-5p 12700 Cish acuGACGAUGGGUAAG-AGUCAu |||||::|| ||| ||||| guuCUGCUGUCCUUUCUUCAGUc 2 20 73 95 [mm9:9:107203304-107203326:+] 0.5350 143 0 -23.72 -0.4125 MIMAT0004863 mmu-miR-220 12700 Cish uucACAGACUGUGACACCACc || || | :||||||| auaUGGCU--CUUUGUGGUGa 2 19 205 223 [mm9:9:107203436-107203454:+] 0.5627 147 7 -16.83 -0.5347 MIMAT0004865 mmu-miR-297c 12700 Cish uguacauguacgUGUGUAUGUa |:||||||| agagagggagaaAUACAUACAc 2 11 933 954 [mm9:9:107204164-107204185:+] 0.6108 146 7 -11.08 -0.8224 MIMAT0004881 mmu-miR-466f-5p 12700 Cish guACGUGUACGUGUGUGUG-CAu ||| | ||| | ||||| || ccUGCUC-UGC-CUCACACAGUc 2 21 14 34 [mm9:9:107203245-107203265:+] 0.5575 120 0 -14.73 -0.5248 MIMAT0004883 mmu-miR-466g 12700 Cish acacacacguacacAGACAUa |||||| uccacugauuuuuuUCUGUAa 2 8 1015 1035 [mm9:9:107204246-107204266:+] 0.5807 120 6 -5.06 -0.1722 MIMAT0004887 mmu-miR-467d* 12700 Cish cacauccacacacaUACAUAUa ||||||| caggcccccuacccAUGUAUAg 2 9 361 382 [mm9:9:107203592-107203613:+] 0.5784 140 7 -6.24 -0.1319 MIMAT0004892 mmu-miR-568 12700 Cish cacacAUAUGUAAAUAUGUa || ||| ||||||| gggacUACACAGUUAUACAg 2 16 464 483 [mm9:9:107203695-107203714:+] 0.6805 159 7 -7.89 -0.6208 MIMAT0004933 mmu-miR-878-3p 12700 Cish agaUGGGUCACACCAC-AGUACg | |||| | | || ||||| aucAGCCAGAG-GUUGAUCAUGc 2 20 409 430 [mm9:9:107203640-107203661:+] 0.5860 121 0 -18.41 -0.2251 MIMAT0005294 mmu-miR-467e* 12700 Cish uauauccacacacaUACAUAUa ||||||| caggcccccuacccAUGUAUAg 2 9 361 382 [mm9:9:107203592-107203613:+] 0.5784 140 7 -6.24 -0.1319 MIMAT0005830 mmu-miR-466l 12700 Cish uuauaCACACGUACAUAAAUAu || | :|| ||||||| auacaGUAUUUAUUUAUUUAUu 2 18 478 499 [mm9:9:107203709-107203730:+] 0.6805 157 7 -7.45 -1.1019 MIMAT0005833 mmu-miR-669d 12700 Cish ugUAUAUGUACGUGUGUGUUCa | | :::| : ||||||| aaACAAGUGUUAGAACACAAGa 2 21 973 994 [mm9:9:107204204-107204225:+] 0.6108 144 7 -12.28 -0.9025 MIMAT0005833 mmu-miR-669d 12700 Cish uguauauguacgUGUGUGUUCa | ||||||| gacaggagccagAAACACAAGg 2 11 729 750 [mm9:9:107203960-107203981:+] 0.5709 142 7 -12.24 -0.1040 MIMAT0005849 mmu-miR-1191 12700 Cish aucccgaUGUAUCAUUCUGAc || || |||||| cauacacACCUAACAAGACUu 2 15 948 968 [mm9:9:107204179-107204199:+] 0.6108 122 6 -6.34 -0.1074 MIMAT0005853 mmu-miR-669e 12700 Cish uacuUGUACGUGUG---UGUUCUGu |||| ||||| ||||||| aaauACAUACACACCUAACAAGACu 2 19 943 967 [mm9:9:107204174-107204198:+] 0.6108 165 7 -19.35 -1.0823 MIMAT0007874 mmu-miR-1904 12700 Cish ggaGGGAGGUC--UCCUC-GUCUUg || ||| ||||| ||||| uggCCAGACAGACAGGAGCCAGAAa 2 20 719 743 [mm9:9:107203950-107203974:+] 0.5709 122 0 -21.41 -0.2845 MIMAT0007877 mmu-miR-1894-5p 12700 Cish ucucCGUCCACCAUC-CCCUCUc ||| ||| || |||||| gccuGCACGUGAGAGAGGGAGAa 2 19 922 944 [mm9:9:107204153-107204175:+] 0.6108 130 6 -19.66 -0.7609 MIMAT0007878 mmu-miR-1894-3p 12700 Cish gagggaagugggaGAGGGAACg |||||||| gccgcagauguagCUCCCUUGu 2 10 877 898 [mm9:9:107204108-107204129:+] 0.5975 145 7 -18.91 -0.1977 MIMAT0007878 mmu-miR-1894-3p 12700 Cish gagggAAGUGGGAGAG-GGAACg ||:|::: :|| ||||| auuuaUUUAUUUAUUCUCCUUGc 2 18 485 507 [mm9:9:107203716-107203738:+] 0.6130 121 0 -16.80 -0.6598 MIMAT0009390 mmu-miR-1927 12700 Cish agucagggAUUGUAGGUCUCCAg || || |||||||| ugggagaaUAUCAGCCAGAGGUu 2 16 400 422 [mm9:9:107203631-107203653:+] 0.5860 159 7 -17.40 -0.2385 MIMAT0009394 mmu-miR-1931 12700 Cish cgguagcguggucGGGAACGUa :||||||| uauuuauuuauucUCCUUGCAg 2 10 488 509 [mm9:9:107203719-107203740:+] 0.6130 141 7 -13.20 -0.5693 MIMAT0009397 mmu-miR-1933-3p 12700 Cish uaUCAGUGUGACUACCA-GGACc |||||: | |||| |||| ucAGUCAUCC---UGGUGCCUGc 2 21 90 109 [mm9:9:107203321-107203340:+] 0.5581 120 0 -21.35 -0.2882 MIMAT0009398 mmu-miR-1934 12700 Cish ucuCCUGCUUCGUC-CCCUGGUCu | |:| : ||| ||||||| cauGCAUGUGACAGCUGGACCAGa 2 21 109 132 [mm9:9:107203340-107203363:+] 0.5813 151 7 -20.38 -0.5506 MIMAT0009399 mmu-miR-1935 12700 Cish ucucUAGGCGGUCGGAGACGGa |||| | :||||||| agccAUCC-CACUUCUCUGCCc 2 19 535 555 [mm9:9:107203766-107203786:+] 0.5788 148 7 -20.25 -0.2569 MIMAT0009399 mmu-miR-1935 12700 Cish ucuCUAGG-CGGUCG---GAGACGGa || || | || | ||||||| -cuGAGCCAGGCACCCUGCUCUGCCu 2 20 1 25 [mm9:9:107203232-107203256:+] 0.5575 145 7 -21.46 -0.4805 MIMAT0009404 mmu-miR-1940 12700 Cish uugaCGAGGUGGAAGAGUCAGGAG-GUa ||||| || :|| ||||| || aaggGCUCCCACUCUUC--UCCUCACAg 2 24 747 772 [mm9:9:107203978-107204003:+] 0.5709 128 0 -23.43 -0.2173 MIMAT0009419 mmu-miR-669m 12700 Cish uauacaaacacaccUACAUAUa ||||||| caggcccccuacccAUGUAUAg 2 9 361 382 [mm9:9:107203592-107203613:+] 0.5784 140 7 -5.52 -0.1319 MIMAT0009421 mmu-miR-669o 12700 Cish uguaUUUGUACGUGUGUGUUGAu |:: || ||||||||| gaggAGGGAUUGUCACACAACUc 2 20 159 181 [mm9:9:107203390-107203412:+] 0.5469 155 7 -15.46 -0.1652 MIMAT0009423 mmu-miR-1952 12700 Cish gucUUCCUCCCACCUCu |||| ||||||| aacAAGGCAGGUGGAGg 2 15 146 162 [mm9:9:107203377-107203393:+] 0.5469 154 7 -20.15 -0.2188 MIMAT0009439 mmu-miR-1966 12700 Cish cugagagagGACUCGGUCGAGGGAa | || :|||||||| caagggccgCAGAUGUAGCUCCCUu 2 17 872 896 [mm9:9:107204103-107204127:+] 0.5975 152 7 -22.24 -0.4144 MIMAT0011221 mmu-miR-2145 12700 Cish uuGGUCCGGGCUGGGACGa |||||| ||||||| agCCAGGC---ACCCUGCu 2 18 4 19 [mm9:9:107203235-107203250:+] 0.5575 153 7 -27.69 -0.3485 MIMAT0012771 mmu-miR-432 12700 Cish gaCGGGUGACUAGAUGA-GGUUCu ||||||| |:| || ||||| guGCCCACU-UUUUUCUCCCAAGc 2 22 678 700 [mm9:9:107203909-107203931:+] 0.5709 135 0 -25.34 -0.4110 MIMAT0015645 mmu-miR-3473 12700 Cish ccgaCUCG-GUAGAGAGGu || | |:||||||| gcagGACCUCGUCUCUCCa 2 15 246 264 [mm9:9:107203477-107203495:+] 0.5784 149 7 -21.56 -0.1037 MIMAT0004528 mmu-miR-125a-3p 12700 Cish ccgAGGGUUCUUGGA-GUGGACa |||:::| | | |||||| augUCCUGGGCCCAUCCACCUGu 2 20 647 669 [mm9:9:107203878-107203900:+] 0.6121 123 6 -21.66 -0.1458 MIMAT0000146 mmu-miR-134 12700 Cish gggGAGAC-CAGUUGGUCAGUGu ||||| ||| ||||||| cugCUCUGCCUCACACAGUCACa 2 20 15 37 [mm9:9:107203246-107203268:+] 0.5575 162 7 -24.38 -0.7001 MIMAT0000153 mmu-miR-141 12700 Cish gguaGAAAUGGUCUG-UCACAAu ||||| | || |||||| aagaCUUUAGAAAACAAGUGUUa 2 19 962 984 [mm9:9:107204193-107204215:+] 0.6108 130 6 -13.83 -0.7988 MIMAT0000159 mmu-miR-149 12700 Cish ccCUCACU--UCUG--UG-CCUCGGUCu |:|||: |||| || |||||||| cuGGGUGGCCAGACAGACAGGAGCCAGa 2 22 714 741 [mm9:9:107203945-107203972:+] 0.5709 162 7 -32.16 -0.2314 MIMAT0000159 mmu-miR-149 12700 Cish cccucacuucuguGCCUCGGUCu | ||||||| -------------CUGAGCCAGg 2 11 1 10 [mm9:9:107203232-107203241:+] 0.6152 142 7 -15.66 -0.2312 MIMAT0000160 mmu-miR-150 12700 Cish gugacCAUGUUCCCAACCCUCu | || | | ||||||| cacaaGAACCA-GUUUGGGAGu 2 18 988 1008 [mm9:9:107204219-107204239:+] 0.6108 147 7 -15.11 -0.8227 MIMAT0000214 mmu-miR-185 12700 Cish agUCCUUGACGGA-AAGAGAGGu ||| | ||| ||||||| acAGGCAGGACCUCGUCUCUCCa 2 21 242 264 [mm9:9:107203473-107203495:+] 0.5784 151 7 -26.32 -0.1037 MIMAT0000214 mmu-miR-185 12700 Cish agUCCUUGACGGAAAG-AGAGGu | |::|| || || ||||| acAAGGGCUCCCACUCUUCUCCu 2 21 745 767 [mm9:9:107203976-107203998:+] 0.5709 124 0 -18.88 -0.1754 MIMAT0000219 mmu-miR-24 12700 Cish gacaaggacgacuuGACUCGGu ||||||| --------------CUGAGCCa 2 9 1 8 [mm9:9:107203232-107203239:+] 0.6152 140 7 -13.69 -0.4502 MIMAT0000233 mmu-miR-200b 12700 Cish aguaGUAAUGGUCCGUCAUAAu || :::| ||||||| acuaCACAGUUAUACAGUAUUu 2 19 467 488 [mm9:9:107203698-107203719:+] 0.6805 146 7 -11.30 -1.2174 MIMAT0000519 mmu-miR-200a 12700 Cish uguaGCAAUGGUCUG-UCACAAu | ||| | || |||||| aagaCUUUAGAAAACAAGUGUUa 2 19 962 984 [mm9:9:107204193-107204215:+] 0.6108 122 6 -11.20 -0.8024 MIMAT0000538 mmu-miR-31 12700 Cish guCGAUACGGUCGUAGA-ACGGa || || ||| | ||| |||| gaGCCAUCCCA-CUUCUCUGCCc 2 21 534 555 [mm9:9:107203765-107203786:+] 0.5788 126 0 -14.65 -0.2166 MIMAT0000565 mmu-miR-328 12700 Cish ugCCUUCCCGUCUCUCC-CGGUc || | |||| ||| |||| guGGCCAGACAGACAGGAGCCAg 2 21 718 740 [mm9:9:107203949-107203971:+] 0.5709 124 0 -24.00 -0.2436 MIMAT0000590 mmu-miR-342-3p 12700 Cish ugcccACGCUAAAGACA-CACUCu || | | |:||| ||||| caauaUG-GCUCUUUGUGGUGAGc 2 19 203 225 [mm9:9:107203434-107203456:+] 0.5627 120 0 -12.75 -0.1481 MIMAT0000657 mmu-miR-200c 12700 Cish agGUAGUAAUGGGCCGUCAUAAu || :|||: ||||||| uaCACAGUUAU---ACAGUAUUu 2 22 469 488 [mm9:9:107203700-107203719:+] 0.6805 141 7 -11.17 -1.2174 MIMAT0000661 mmu-miR-214 12700 Cish ugaCGGACAGA-CACGGACG-ACa |:| || |||||||| || ucaGUCAUCCUGGUGCCUGCAUGc 2 20 90 113 [mm9:9:107203321-107203344:+] 0.5581 122 0 -22.15 -0.1846 MIMAT0000679 mmu-miR-217 12700 Cish agGUCAGU-----CAAGGAC-UACGU-CAu |||||| || |||| ||||| || uuCAGUCAUCCUGGUGCCUGCAUGCAUGUg 2 22 89 118 [mm9:9:107203320-107203349:+] 0.5581 127 0 -24.68 -0.1698 MIMAT0000741 mmu-miR-377 12700 Cish uguUUUCAACG-GAAACA-CACUa || | || |||||| |||| uacAAUAUGGCUCUUUGUGGUGAg 2 20 201 224 [mm9:9:107203432-107203455:+] 0.5627 126 0 -16.21 -0.3615 MIMAT0001076 mmu-miR-384-3p 12700 Cish uaACACUUGUUAA--A--GAUCCUUa |||| |: || | ||||||| cuUGUGUCCGUUUCCUGCCUAGGAAg 2 21 894 919 [mm9:9:107204125-107204150:+] 0.6241 146 7 -13.94 -0.1135 MIMAT0001537 mmu-miR-429 12700 Cish ugccGUAAUGGUCUGUCAUAAu || :::| |||||||| acuaCACAGUUAUACAGUAUUu 2 19 467 488 [mm9:9:107203698-107203719:+] 0.6805 154 7 -12.46 -1.2174 MIMAT0004847 mmu-miR-882 12700 Cish ugauuacgcgauugAGAGAGGa ||||||| caggcaggaccucgUCUCUCCa 2 9 243 264 [mm9:9:107203474-107203495:+] 0.5784 140 7 -13.57 -0.1037 MIMAT0004847 mmu-miR-882 12700 Cish ugaUUACGCGAUUGAG-AGAGGa |: || | |||| ||||| acaAGGGCUCCCACUCUUCUCCu 2 20 745 767 [mm9:9:107203976-107203998:+] 0.5709 123 0 -18.79 -0.1738 MIMAT0004853 mmu-miR-874 12700 Cish agccaGGGAGCCCGGUCCCGUc ::||| ||||||| cacucUUCUCCUCACAGGGCAg 2 18 756 777 [mm9:9:107203987-107204008:+] 0.5709 145 7 -24.58 -0.1147 MIMAT0004936 mmu-miR-873 12700 Cish uccuCUGAGUGUUCAA-GGACg | || : ||||| |||| uccuGCCUAGGAAGUUGCCUGc 2 18 906 927 [mm9:9:107204137-107204158:+] 0.6174 121 0 -14.76 -0.2646

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G008996 Cish Mus musculus 12700 9852045 0 0 R24040; MOUSE$CISH_01; Binding factors: (STAT5A)2 , (STAT5B)2 //-29 -21 R72834; MOUSE$CISH_03; Binding factors: STAT5 //-29 -21 R72838; MOUSE$CISH_06; Binding factors: BCL-6 //-18 -10 R72836; MOUSE$CISH_04; Binding factors: STAT5 //-18 -10 R72837; MOUSE$CISH_05; Binding factors: BCL-6

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Cish mmu-miR-669a beg:162 end:181 pic:3' TGTACTTGTACGTGTGTGTTGA 5'& |.|. ||. ||||||||| &5' ----GGAT-TGT-CACACAACT 3' Cish mmu-miR-669l beg:166 end:181 pic:3' TGTATATGTACGTGTGTGTTGA 5'& ||. ||||||||| &5' ---------TGT-CACACAACT 3' Cish mmu-miR-669d beg:733 end:750 pic:3' TGTATATGTACGTG---TGTGTTCA 5'& || ||||||| &5' ----------GCCAGAAACACAAG- 3' Cish mmu-miR-669d beg:976 end:994 pic:3' TGTATATGTACGTG--TGTGTTCA 5'& .||. ||||||| &5' --------GTGTTAGAACACAAG- 3' Cish mmu-miR-881 beg:458 end:478 pic:3' AGATAAGTCTTTTC-TGTGTCAA 5'& .|| .| |||||||| &5' ------TAGGGGACTACACAGTT 3' Cish mmu-miR-2145 beg:1 end:24 pic:3' TTGGTCCG-GGC-TGGGACGA 5'& |.|||||| || .|.|||| &5' AGCCAGGCACCCTGCTCTGC- 3' Cish mmu-miR-720 beg:229 end:243 pic:3' ACCTCCGGGGTCGCTCTA 5'& .| ||||||| &5' ------TCAGAGCGAGA- 3' Cish mmu-miR-18astar beg:347 end:364 pic:3' GTCTTCCTCGTGA-ATCCCGTCA 5'& || |||||||| &5' --------GCTGAGTAGGGCAG- 3' Cish mmu-miR-18astar beg:765 end:778 pic:3' GTCTTCCTCGTGAATCCCGTCA 5'& ||| ||||||| &5' ---------CAC--AGGGCAG- 3' Cish mmu-miR-1928 beg:872 end:892 pic:3' CTCGACCGT-TACATCGA 5'& |.|| ||| |||||||| &5' GGGCC-GCAGATGTAGCT 3' Cish mmu-miR-669o beg:166 end:181 pic:3' TGTATTTGTACGTGTGTGTTGAT 5'& ||. ||||||||| &5' ---------TGT-CACACAACT- 3' Cish mmu-miR-1927 beg:405 end:423 pic:3' AGTCAGGGATTGTAGGTCTCCAG 5'& || || ||||||||. &5' --------TATCAGCCAGAGGTT 3' Cish mmu-miR-2861 beg:352 end:369 pic:3' GGCGGGCGG-CGGTCCGGGG 5'& |. | |||||||| &5' ------GTAGGGCAGGCCCC 3' Cish mmu-miR-874 beg:759 end:778 pic:3' AGCCAG-GGAGCCCGGTCCCGTC 5'& || |||| |||||||| &5' ----TCTCCTCA---CAGGGCAG 3' Cish mmu-miR-30bstar beg:526 end:551 pic:3' CTGCATTT-GTA-GGTGTAGGGTC 5'& |.|||.|. ||| |||| ||.| &5' GGCGTGAGCCATCCCACTTCTC-- 3' Cish mmu-miR-763 beg:47 end:66 pic:3' CGGTGACCAAGAAGGGTCGACC 5'& ||| || ||||||||| &5' --CACAG--TC--CCCAGCTGG 3' Cish mmu-miR-92astar beg:806 end:827 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& || .|||| ||| ||.|||| &5' GTTGTGCC-CCA--CCTCACC- 3' Cish mmu-miR-1935 beg:536 end:555 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& |||| | .||||||| &5' ----ATCC-CACTTCTCTGCC- 3' Cish mmu-miR-709 beg:8 end:27 pic:3' AGGAGGACGGAGACGGAGG 5'& | |||| ||||||||| &5' -CACCCTG-CTCTGCCTC- 3' Cish mmu-miR-484 beg:386 end:396 pic:3' TAGCCCTCCCCTGACTCGGACT 5'& ||||||| &5' --------------GAGCCTG- 3' Cish mmu-miR-1934 beg:115 end:133 pic:3' TCTCCTGCTTCGTCCCCTGGTCT 5'& ||| ||| |||||||| &5' ----GAC--AGCT--GGACCAGA 3' Cish mmu-miR-1952 beg:146 end:163 pic:3' GTCTTCCTCCCACCTCT 5'& |||| |||||||. &5' ---AAGGCAGGTGGAGG 3' Cish mmu-miR-706 beg:327 end:345 pic:3' AAAAAACTCTGTC----CCAAAGAGA 5'& ||| |||||||| &5' ----------CAGCCCTGGTTTCTC- 3' Cish mcmv-miR-M23-2 beg:564 end:584 pic:3' GGCGAACT-GG-CTCCGGGGGTA 5'& ||. || ||| |||||| &5' -----TGGTCCAGAGACCCCCA- 3' Cish mcmv-miR-M23-2 beg:267 end:288 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& ||| |||| |||.|.||| &5' --GCTGGACCTAGGTCTCCA- 3' Cish mcmv-miR-m59-1 beg:334 end:355 pic:3' GACTGCCAGCTCCGT-GACGATT 5'& |||. |||||.| &5' -----GGTTTCTCAGTCTGCTGA 3' Cish mmu-let-7e beg:7 end:28 pic:3' TTGATATGTTGGA-G-GATGGAGT 5'& .|| ||| | ||.||||| &5' ------GCACCCTGCTCTGCCTCA 3' Cish mmu-let-7i beg:6 end:28 pic:3' TTGTCGTGTT-TGATGATGGAGT 5'& .|||| .|| ||.||||| &5' ---GGCACCCTGCT-CTGCCTCA 3' Cish mmu-miR-1190 beg:261 end:283 pic:3' CTGTCTCCC-CTTGGAGTCGACT 5'& ||||||| |.|||| .|. &5' -ACAGAGGCTGGACCTAGGT--- 3' Cish mmu-miR-1198 beg:932 end:952 pic:3' GGTTCGGTCGGTCCT---TGTGTAT 5'& || .||| |.||||| &5' -------AGA-GGGAGAAATACATA 3' Cish mmu-miR-127star beg:773 end:790 pic:3' TAGTCTCGGGAGACTCGAAGTC 5'& ||| || || |||||| &5' --CAGCACCA--TG-GCTTCA- 3' Cish mmu-miR-129-3p beg:733 end:754 pic:3' TACGAAAAACCCCATTCCCGAA 5'& || ||||||| &5' --GCCAGAAACAC-AAGGGCT- 3' Cish mmu-miR-134 beg:10 end:38 pic:3' GGG--GAGACC-AGTTGGTCAGTGT 5'& ||| ||||| ||| |||||||| &5' CCCTGCTCTGCCTCACACAGTCACA 3' Cish mmu-miR-138 beg:122 end:143 pic:3' GCC-GGACTAAGTGTTGTGGTCGA 5'& || || || ||..||||| &5' -GGACCAGAG----AATGCCAGC- 3' Cish mmu-miR-139-3p beg:266 end:288 pic:3' GAGGTTGTCCCGGCG-CAGAGGT 5'& ..| || || ||||||| &5' ----GGCTGGACCTAGGTCTCCA 3' Cish mmu-miR-141 beg:963 end:985 pic:3' GGTAGAAATGGTCTG-TCACAAT 5'& ||||| | || ||||||| &5' ----CTTTAGAAAACAAGTGTTA 3' Cish mmu-miR-149 beg:713 end:742 pic:3' CCCTCACT--TCTGTG---CCTCGGTCT 5'& |.|||. ||||| ||||||||| &5' --GGGTGGCCAGACAGACAGGAGCCAGA 3' Cish mmu-miR-150 beg:385 end:407 pic:3' GTGACCATGTTCC--CA---ACCCTCT 5'& .|.|| || ||||||| &5' -------GCGAGCCTGTTTCTGGGAGA 3' Cish mmu-miR-151-3p beg:331 end:351 pic:3' GGAGTTCCTCGGAGTCAGATC 5'& ||| || .||||||||. &5' CCT---GGTTTCTCAGTCTG- 3' Cish mmu-miR-181a beg:660 end:680 pic:3' TGAGTGGCTGTCGCA-ACTTACAA 5'& |||| |.|| ||.|||| &5' ---CACCT---GTGTATGGATGT- 3' Cish mmu-miR-181b beg:658 end:680 pic:3' TGGGTGGCTGTCGTTACTTACAA 5'& |.||||| |. |||.|||| &5' ATCCACCTGT-GT-ATGGATGT- 3' Cish mmu-miR-181c beg:660 end:680 pic:3' TGAGTGGCTGTCCAACTTACAA 5'& |||| | ||.|||| &5' ---CACCTGT-GTATGGATGT- 3' Cish mmu-miR-181d beg:658 end:680 pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& |.||||| .. |||.|||| &5' ATCCACCTGTGT--ATGGATGT- 3' Cish mmu-miR-1839-5p beg:4 end:26 pic:3' GTTC-TGGACAAGAT-AGATGGAA 5'& ||.| ||| ||. |||.||| &5' CAGGCACC----CTGCTCTGCCT- 3' Cish mmu-miR-185 beg:676 end:696 pic:3' AGTCCTTGACGG----AAAGAGAGGT 5'& |||| |||.||||| &5' --------TGCCCACTTTTTTCTCC- 3' Cish mmu-miR-1894-5p beg:923 end:944 pic:3' TCTCCGTCCACCATC-CCCTCTC 5'& ||| ||| || |||||| &5' ----GCACGTGAGAGAGGGAGA- 3' Cish mmu-miR-1894-5p beg:386 end:407 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& ||| | || |||||| &5' -GAGCCT-GTTTCT-GGGAGA- 3' Cish mmu-miR-1896 beg:116 end:135 pic:3' GAGGAGTGGGTGGTA--GTCTCTC 5'& | || .|.. |||||| &5' ----TGACA-GCTGGACCAGAGA- 3' Cish mmu-miR-1897-5p beg:751 end:775 pic:3' GGGG-GAGAAAGAGGTAG-GTTTC 5'& ||| ||| |||||| || ||..| &5' -CCCACTC-TTCTCC-TCACAGGG 3' Cish mmu-miR-1929 beg:637 end:657 pic:3' GAGACGAGATATTTCAGGATCTT 5'& | ||. || |||||.|. &5' ----GTCCTG-AATGTCCTGGG- 3' Cish mmu-miR-1933-5p beg:768 end:788 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& |.|.| .|||||||.|| &5' -----AGGGCA--GCACCATGGCT 3' Cish mmu-miR-1934 beg:707 end:727 pic:3' TCTCCTGCTTCGTCCC-CTGGTCT 5'& ||.|| ||| |.||||| &5' -------GAGGCTGGGTGGCCAGA 3' Cish mmu-miR-1935 beg:5 end:26 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& ||. | || | |||||||| &5' --AGGCAC-CCTG-CTCTGCCT 3' Cish mmu-miR-1937c beg:834 end:858 pic:3' AC-CCCCGA----GAA--GGCCCTA 5'& | ||||| || .||||| &5' -GAGGGGCGTGTGCTGGGTCGGGA- 3' Cish mmu-miR-193star beg:589 end:610 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& |||| ||.| .|||||| &5' ---TCTTCCCTGTGGAGACCC- 3' Cish mmu-miR-1951 beg:268 end:293 pic:3' ATCGGTGTGG--TCAGAGGTGA-TG 5'& .||.. ||| .||||||||| || &5' -GGCTGGACCTAGGTCTCCACTCAC 3' Cish mmu-miR-1956 beg:638 end:658 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& .| |||| |.|||||.| &5' -TC-CTGAAT--GTCCTGGGC- 3' Cish mmu-miR-1958 beg:73 end:91 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& ||||| | |||||.| &5' -----CTGCTGTC-CTTTCTT- 3' Cish mmu-miR-1961 beg:12 end:28 pic:3' AAGATTGATGATGGAGT 5'& || .|| ||.||||| &5' --CT-GCT-CTGCCTCA 3' Cish mmu-miR-1967 beg:75 end:101 pic:3' CG-TAGAAGAGGGGTCC-TAGGAGT 5'& || .|| |.||..||| ||||| &5' GCTGTCCTTTCTTCAGTCATCCT-- 3' Cish mmu-miR-1982star beg:678 end:698 pic:3' GGAGGGGTCCT--GGGAGGGTT 5'& |||| ..||||||| &5' ----CCCACTTTTTTCTCCCAA 3' Cish mmu-miR-1983 beg:141 end:159 pic:3' TCTTTTGTACGAGGTCCACTC 5'& |.|||| | ||||||. &5' --AGAACAAGG--CAGGTGG- 3' Cish mmu-miR-200a beg:965 end:985 pic:3' TGTAGCAATGGTCTG----TCACAAT 5'& ..||| ||||||| &5' ---------TTAGAAAACAAGTGTTA 3' Cish mmu-miR-200cstar beg:341 end:362 pic:3' GGTTTGTGACGACCCATTCTGC 5'& ||. |||||| |||.|.| &5' -CAGT--CTGCTGAGTAGGGC- 3' Cish mmu-miR-201 beg:343 end:358 pic:3' TTCTTGTTACGGAATGACTCAT 5'& |.| |.||||||| &5' ---------GTC-TGCTGAGTA 3' Cish mmu-miR-204 beg:923 end:943 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& ||| .||| |.|||||. &5' --GCAC---GTGAGAGAGGGAG 3' Cish mmu-miR-211 beg:923 end:943 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& ||| .||| |.|||||. &5' --GCAC---GTGAGAGAGGGAG 3' Cish mmu-miR-2132 beg:278 end:298 pic:3' GTAGCGCAGTT----GTGGGCGG 5'& ||| |||..||| &5' ------GTCTCCACTCACTTGCC 3' Cish mmu-miR-2135 beg:953 end:970 pic:3' CAAAGCCGGG--GTTCTGGAGA 5'& ||. ||||||.|. &5' -------CCTAACAAGACTTT- 3' Cish mmu-miR-2135 beg:242 end:256 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& ||| .|||||| &5' -----GGCA---GGACCTC- 3' Cish mmu-miR-214 beg:62 end:83 pic:3' TGAC-GGACAGACACGGACGACA 5'& | |.|| || .||||||| &5' ---GACTTGGG-GT-TCTGCTGT 3' Cish mmu-miR-214 beg:335 end:354 pic:3' TGACGGACAGACACGGACGACA 5'& |..| || |.|||||| &5' ---GTTTCTCA--GTCTGCTG- 3' Cish mmu-miR-2146 beg:75 end:92 pic:3' GTGTACCTTGGGAAGAGGTG 5'& .| || ||.||||.|| &5' -GC-TGT--CCTTTCTTCA- 3' Cish mmu-miR-214star beg:230 end:249 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& || |||. ||||||||| &5' -CAGAGCG-----AGACAGGCA 3' Cish mmu-miR-214star beg:138 end:158 pic:3' CGTGTCGTTCACA-TCTGTCCGT 5'& ||||||| ||.||||. &5' ---CAGCAAGAACAAGGCAGGT- 3' Cish mmu-miR-215 beg:173 end:190 pic:3' CAGACAGTTTAGTATCCAGTA 5'& ||| || |||||| &5' ------CAACTCTGAGGTCA- 3' Cish mmu-miR-220 beg:205 end:223 pic:3' TTCACAGACTGT--GACACCACC 5'& ||.| .||||||| &5' -------TGGCTCTTTGTGGTG- 3' Cish mmu-miR-222 beg:868 end:892 pic:3' TGGGTCATCGG--TCTACATCGA 5'& |.||| .||| |||||||||| &5' ATCCAAGGGCCGCAGATGTAGCT 3' Cish mmu-miR-24 beg:638 end:659 pic:3' GACAAGGACG-ACTTGACTCGGT 5'& ||||| || |||.||| &5' ----TCCTGAATGTCCTGGGCC- 3' Cish mmu-miR-27a beg:586 end:605 pic:3' CGCCTTGAATCGGTGACACTT 5'& || ||| || |||||.| &5' --GGTTCTT--CC-CTGTGGA 3' Cish mmu-miR-2861 beg:291 end:311 pic:3' GGCGGGCGGCGGTCCGG-GG 5'& .|||.||| |. ||| || &5' -TGCCTGCC-CTT-GCCACC 3' Cish mmu-miR-2861 beg:568 end:589 pic:3' GGCGGG---C-GGCGGTCCGGGG 5'& |.|| | || |||||.|. &5' --GTCCAGAGACCCCCAGGTCT- 3' Cish mmu-miR-290-5p beg:990 end:1006 pic:3' TTTCACGGGGGTATCAAACTCA 5'& | || ||||||.| &5' -----GAACC---AGTTTGGG- 3' Cish mmu-miR-292-5p beg:985 end:1006 pic:3' GTTTTCTCGGGGGTCAAACTCA 5'& || |||| ||||||||.| &5' CACAAGAA---CCAGTTTGGG- 3' Cish mmu-miR-293star beg:985 end:1006 pic:3' GTTTTACAGTGT-----GTCAAACTCA 5'& |||| |||||||.| &5' --------CACAAGAACCAGTTTGGG- 3' Cish mmu-miR-294 beg:31 end:53 pic:3' TGTGTGT--TTTCCCTTCGTGAAA 5'& ||||. ..|||||| ||| &5' -CACATCCTGGAGGGAA-CAC--- 3' Cish mmu-miR-296-3p beg:314 end:337 pic:3' CCTCTCGGA--GGTGGGTTGGGAG 5'& | |.|| .| ||||.|||| &5' ---GTGTCTATTCTCCCAGCCCT- 3' Cish mmu-miR-298 beg:539 end:555 pic:3' CCCTTCTTGTCGG-GAGGAGACGG 5'& || ||.||||||| &5' -----------CCACTTCTCTGCC 3' Cish mmu-miR-29bstar beg:721 end:741 pic:3' ATTTGGTG-GTATA-CTTTGGTCG 5'& ||| || |.|.|||| &5' ----CCAGACAGACAGGAGCCAG- 3' Cish mmu-miR-29bstar beg:985 end:1001 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& ||| .||||||. &5' -----CACAA----GAACCAGT 3' Cish mmu-miR-3099star beg:905 end:923 pic:3' GTTCCCGACCT-TCCTTCGACC 5'& ||| ||||||.|| &5' ------CTGCCTAGGAAGTTG- 3' Cish mmu-miR-3099star beg:700 end:718 pic:3' GTTCCCGACCTTCCTTCGACC 5'& || .|||.||||| &5' ------CTTTTGGGAGGCTGG 3' Cish mmu-miR-30bstar beg:597 end:618 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& ||..| | || ||||||| &5' ---GTGGAGACCCCCATCCCA- 3' Cish mmu-miR-30c-2star beg:675 end:698 pic:3' TCTCATTTGTC--GGAAGAGGGTC 5'& ||. || ..|||||||| &5' ---GTGCCCACTTTTTTCTCCCA- 3' Cish mmu-miR-30c-2star beg:309 end:333 pic:3' TCTCATTTGT--CGGA--AGAGGGTC 5'& |.||| |.|| |||||||| &5' ----TGAACTGTGTCTATTCTCCCAG 3' Cish mmu-miR-330 beg:115 end:135 pic:3' CGGATTCTGT-GTCCGGGTCTCT 5'& |||| | || ||||||| &5' ------GACAGCTGGACCAGAGA 3' Cish mmu-miR-330 beg:558 end:578 pic:3' CG-GATTCTGTGTCCGGGTCTCT 5'& || ||..| ||.||||||| &5' GCTCTGGGT----GGTCCAGAGA 3' Cish mmu-miR-331-3p beg:450 end:467 pic:3' AAGATCCTATCCGGGTCCCCG 5'& || || |.||||| &5' ------GACTGGGCTAGGGG- 3' Cish mmu-miR-337-3p beg:781 end:800 pic:3' TCCGTAGTATATCCTCGACTT 5'& ||| ||||| ||||||. &5' -GGCTTCATA---GAGCTGG- 3' Cish mmu-miR-343 beg:923 end:944 pic:3' AGACCCGTGTACT---TCCCTCT 5'& ||||.||| ||||||| &5' -----GCACGTGAGAGAGGGAGA 3' Cish mmu-miR-344 beg:265 end:284 pic:3' TGTCAGTCCGAAACCGATCTAGT 5'& ||||| ||||.|| &5' ------AGGCTGGACCTAGGTC- 3' Cish mmu-miR-3473 beg:242 end:264 pic:3' CCGA-CTCG-GTAGAGAGGT 5'& ||| || | |.|||||||| &5' GGCAGGACCTCGTCTCTCCA 3' Cish mmu-miR-3473 beg:675 end:696 pic:3' CCGACTCGGT-----AGAGAGGT 5'& || ||| |.||||| &5' ---TGTGCCCACTTTTTTCTCC- 3' Cish mmu-miR-3473 beg:216 end:234 pic:3' CCGACTCGGTAGAGAGGT 5'& | |||||||| | || &5' -GGTGAGCCATGTATC-- 3' Cish mmu-miR-3475 beg:179 end:201 pic:3' AAGTTTGGTACACGGAGGTCT 5'& | |. || |||||.||. &5' -TGAGGTCAAC-GCCTCTAGG 3' Cish mmu-miR-376c beg:798 end:812 pic:3' TGCACTTTAAAGGAGATACAA 5'& |.||||||||| &5' ----------TTCTCTATGTT 3' Cish mmu-miR-381 beg:885 end:901 pic:3' TGTCTCTCGAACGGGAACATAT 5'& |||| |||||||.| &5' ------AGCT--CCCTTGTGT- 3' Cish mmu-miR-384-3p beg:384 end:406 pic:3' TAACACTTGT-TAAAGATCCTTA 5'& | ||.| .|||||.|||. &5' ---GCGAGCCTGTTTCTGGGAG- 3' Cish mmu-miR-423-5p beg:746 end:770 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& ||.| ||| | |||| |.||||| &5' AAGGGCTCCCACTCTTCTCCTCA 3' Cish mmu-miR-429 beg:466 end:488 pic:3' TGCCGTAATG-GTC----TGTCATAAT 5'& ||| ||| |||||||| &5' -------TACACAGTTATACAGTATT- 3' Cish mmu-miR-450b-3p beg:676 end:698 pic:3' TACGTACGTTTTACAAGGGTTA 5'& .||| |||||| &5' GTGCCCACTTTTTTCTCCCAA- 3' Cish mmu-miR-465a-3p beg:329 end:341 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||||.|. &5' -------------GCCCTGGTT 3' Cish mmu-miR-465b-3p beg:329 end:341 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||||.|. &5' -------------GCCCTGGTT 3' Cish mmu-miR-465c-3p beg:329 end:341 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||||.|. &5' -------------GCCCTGGTT 3' Cish mmu-miR-468 beg:75 end:98 pic:3' GTCTGTGTGCGTGT----AGTCAGTAT 5'& .| .| | |||||||| &5' -----GC-TGTCCTTTCTTCAGTCAT- 3' Cish mmu-miR-483star beg:505 end:523 pic:3' TTCTGCCCTCCCC--TCCTCACT 5'& ||||| .||.|||. &5' --------AGGGGTTGGGGGTGG 3' Cish mmu-miR-511 beg:138 end:155 pic:3' ACTCACGTCTCGTTTTCCGTA 5'& ||| || |||||| &5' -----GCA-AGAACAAGGCA- 3' Cish mmu-miR-539 beg:326 end:345 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& |||. |..|||||| &5' -----CCAGCCCTGGTTTCTC- 3' Cish mmu-miR-615-5p beg:236 end:256 pic:3' CTAGGCTCGTGGCC--CCTGGGGG 5'& |||| || || |||||.| &5' ----CGAG-ACAGGCAGGACCTC- 3' Cish mmu-miR-654-5p beg:287 end:309 pic:3' TGTGTACAAGACGTCGAATGGT 5'& ||| || |||| |||.||| &5' -CACTTGC-CTGCC-CTTGCCA 3' Cish mmu-miR-666-5p beg:907 end:928 pic:3' CCGAGAGTG-TCGACACGGGCGA 5'& || || ||. ||||.|| &5' -GC-CTAGGAAGT--TGCCTGC- 3' Cish mmu-miR-666-5p beg:91 end:110 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& |||. |||||.|| &5' -----TCATCCTGGTGCCTGC- 3' Cish mmu-miR-669b beg:944 end:968 pic:3' TGTACGTGTACGTGTGTTTTGA 5'& |||| |||| ||||.||| &5' ACATACACACCTA-ACAAGACT 3' Cish mmu-miR-669e beg:939 end:967 pic:3' TACT---TGTACGTGTG---TGTTCTGT 5'& || |||| ||||| ||||||| &5' --GAAATACATACACACCTAACAAGAC- 3' Cish mmu-miR-669e beg:138 end:155 pic:3' TACTTGTACGTGTGTGTTCTGT 5'& ||| |||||.|| &5' --------GCAAGAACAAGGCA 3' Cish mmu-miR-671-5p beg:326 end:343 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& |||||||. ||.|||. &5' --CCAGCCCT-----GGTTTCT- 3' Cish mmu-miR-672 beg:21 end:44 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& | |||||||| ||| ||| . &5' -CTCACACAGT-CACAT-CCTGG 3' Cish mmu-miR-672 beg:467 end:490 pic:3' AGTGTGTGTC-ATGTGGTTGGAGT 5'& .|||||| ||.|| .|.| &5' ---TACACAGTTATACAGTATTTA 3' Cish mmu-miR-673-3p beg:314 end:339 pic:3' CCACGTGTCTT-GAGTCGGGGCCT 5'& |||. | ||||||.|| &5' -GTGTCTATTCTCCCAGCCCTGG- 3' Cish mmu-miR-675-3p beg:933 end:954 pic:3' TGACTCGCCAATCCC--GTATGTC 5'& ||| || |||||| &5' ---GAGAGGGAGAAATACATACA- 3' Cish mmu-miR-677 beg:1004 end:1023 pic:3' AGTCTTCGATTAGTA-GTGACTT 5'& .||.| || |||||| &5' ----GAGTTTTTCTTCCACTGA- 3' Cish mmu-miR-678 beg:385 end:405 pic:3' GGAGGTCAGGAACGT-GGCTCTG 5'& | || || ||. |.|.|| &5' ---CGAG-CC-TGTTTCTGGGA- 3' Cish mmu-miR-679 beg:36 end:58 pic:3' TGGTTCTCAGTGGAGTGTCAGG 5'& || .||| | |||||||| &5' -CCTGGAGGGAA--CACAGTCC 3' Cish mmu-miR-692 beg:927 end:944 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& ||||| | ..|||| &5' --GTGAGA-GA---GGGAGA- 3' Cish mmu-miR-696 beg:21 end:39 pic:3' GGGTGTCGTTCGTGTGCG 5'& |.|||| ||. ||||. &5' CTCACA-CAGTCACAT-- 3' Cish mmu-miR-705 beg:810 end:835 pic:3' AC-GGGTGGGGTGGAGGG-TGG 5'& || ||||||.|||| ||| .|| &5' TGCCCCACCTCACCCCCCTGCC 3' Cish mmu-miR-708 beg:54 end:78 pic:3' GGGTCGATCT-AACATTCGAGGAA 5'& |||||||.|| ||| ..|.||. &5' CCCAGCTGGACTTG-GGGTTCT-- 3' Cish mmu-miR-708star beg:573 end:593 pic:3' GATCTTCGAGTGTCAGATCAAC 5'& ||| | || .||||.||| &5' --AGACCCCCA-GGTCTGGTT- 3' Cish mmu-miR-710 beg:52 end:72 pic:3' GAGTTGAGAGGGGT---TCTGAACC 5'& |||||| .||||||| &5' --------TCCCCAGCTGGACTTGG 3' Cish mmu-miR-715 beg:664 end:677 pic:3' GTGCGCCCCCACACGTGCCTC 5'& ||||.|.||| &5' ----------TGTGTATGGA- 3' Cish mmu-miR-744 beg:2 end:24 pic:3' ACGACAATCGGGATCGGGGCGT 5'& || |||| ||.|.|| &5' -GCCAGGCACCCT-GCTCTGC- 3' Cish mmu-miR-761 beg:334 end:354 pic:3' ACACAGTCAA--AGTGGGACGACG 5'& .||| ||| .|||||| &5' ------GGTTTCTCAGTCTGCTG- 3' Cish mmu-miR-762 beg:312 end:337 pic:3' CGAGACAGGGCC-GGGGTCGGGG 5'& || ||||. .||||||||. &5' -CTGTGTCTATTCTCCCAGCCCT 3' Cish mmu-miR-770-3p beg:640 end:660 pic:3' GGTCGAGG---TGCAG--TCCGGGTGC 5'& ||| |.||| .||||||. &5' -----TCCTGAATGTCCTGGGCCCAT- 3' Cish mmu-miR-881 beg:35 end:56 pic:3' AGATAAGT-CTTTTC-TGTGTCAA 5'& || |.|..| ||||||| &5' -----TCCTGGAGGGAACACAGT- 3' Cish mmu-miR-883b-5p beg:329 end:348 pic:3' ACTGACGATGGGT---AAGAGTCAT 5'& .||| |||||||| &5' --------GCCCTGGTTTCTCAGT- 3' Cish mmu-miR-9 beg:116 end:135 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& ||||||.|| |||.||| &5' ----ACAGCTGGA---CCAGAGA 3' Cish mmu-miR-92astar beg:357 end:374 pic:3' CATTACGG-TGGTTAGGGGTGGA 5'& || .|| |||.||| &5' -----GCAGGCC---CCCTACC- 3' Cish mmu-miR-93 beg:17 end:37 pic:3' GATGGACGTGCTTGTC-GTGAAAC 5'& ||.||| ||| |||| ||| &5' CTGCCT-CAC--ACAGTCAC---- 3' Cish mmu-miR-98 beg:7 end:28 pic:3' TTGTTATGTT-GAAT-GATGGAGT 5'& .|| || ||.||||| &5' ------GCACCCTGCTCTGCCTCA 3' Cish mmu-miR-99bstar beg:715 end:738 pic:3' GC-CTGGG-TGTCTGTGCTCGAAC 5'& | |.|| ||||||| |||| &5' -GTGGCCAGACAGACAGGAGC--- 3' Cish mmu-miR-30c-1star beg:681 end:698 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& || ...||||||| &5' -------ACTTTTTTCTCCCA- 3' Cish mmu-miR-185 beg:245 end:265 pic:3' AGTCCTTGACGGAA-AGAGAGGT 5'& ||||| ||| |||||||| &5' -CAGGA----CCTCGTCTCTCCA 3' Cish mmu-miR-882 beg:254 end:264 pic:3' TGATTACGCGATTGAGAGAGGA 5'& ||||||| &5' --------------TCTCTCC- 3' Cish mmu-miR-551b beg:838 end:855 pic:3' GACTTTGGTTCAT-ACCCAGCG 5'& |. ||. ||||||| &5' -------CGTGTGCTGGGTCG- 3' Cish mmu-miR-150 beg:992 end:1008 pic:3' GTGACCATGTTCCCAACCCTCT 5'& || || ||||||| &5' -------ACCAGT-TTGGGAG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cish RAID00032330 mmu-miR-881-3p miRNA MIMAT0004846 Cish mRNA 12700 Prediction 0.1828 Cish RAID00032968 mmu-miR-5107-5p miRNA MIMAT0020615 Cish mRNA 12700 Prediction 0.1828 Cish RAID00035936 mmu-miR-185-5p miRNA MIMAT0000214 Cish mRNA 12700 Prediction 0.2202 Cish RAID00042041 mmu-miR-6940-5p miRNA MIMAT0027780 Cish mRNA 12700 Prediction 0.1828 Cish RAID00052756 mmu-miR-1952 miRNA MIMAT0009423 Cish mRNA 12700 Prediction 0.1828 Cish RAID00055398 mmu-miR-7653-5p miRNA MIMAT0029812 Cish mRNA 12700 Prediction 0.1828 Cish RAID00218262 mmu-miR-18a-3p miRNA MIMAT0004626 Cish mRNA 12700 Prediction 0.1828 Cish RAID00280942 mmu-miR-6958-5p miRNA MIMAT0027816 Cish mRNA 12700 Prediction 0.1828 Cish RAID00595270 mmu-miR-1934-3p miRNA MIMAT0017341 Cish mRNA 12700 Prediction 0.1828 Cish RAID00697599 mmu-miR-194-1-3p miRNA MIMAT0016999 Cish mRNA 12700 Prediction 0.1828 Cish RAID00757093 mmu-miR-6976-3p miRNA MIMAT0027855 Cish mRNA 12700 Prediction 0.1828 Cish RAID00811068 mmu-miR-7648-3p miRNA MIMAT0029799 Cish mRNA 12700 Prediction 0.1828 Cish RAID00876999 mmu-miR-7069-3p miRNA MIMAT0028045 Cish mRNA 12700 Prediction 0.1828 Cish RAID00908375 mmu-miR-377-3p miRNA MIMAT0000741 Cish mRNA 12700 Prediction 0.1828 Cish RAID00989140 mmu-miR-150-5p miRNA MIMAT0000160 Cish mRNA 12700 CLIP-seq//Prediction 0.6478 Cish RAID01039989 mmu-miR-149-5p miRNA MIMAT0000159 Cish mRNA 12700 Prediction 0.2202 Cish RAID01058660 mmu-miR-24-3p miRNA MIMAT0000219 Cish mRNA 12700 Prediction 0.1828 Cish RAID01112388 mmu-miR-7647-3p miRNA MIMAT0029797 Cish mRNA 12700 Prediction 0.1828 Cish RAID01128281 mmu-miR-342-3p miRNA MIMAT0000590 Cish mRNA 12700 Prediction 0.1828 Cish RAID01146749 mmu-miR-874-3p miRNA MIMAT0004853 Cish mRNA 12700 Prediction 0.1828 Cish RAID01183198 mmu-miR-763 miRNA MIMAT0003896 Cish mRNA 12700 Prediction 0.1828 Cish RAID01273638 mmu-miR-30c-2-3p miRNA MIMAT0005438 Cish mRNA 12700 Prediction 0.1828 Cish RAID01623642 mmu-miR-140-3p miRNA MIMAT0000152 Cish mRNA 12700 Prediction 0.1828 Cish RAID01697311 mmu-miR-200c-3p miRNA MIMAT0000657 Cish mRNA 12700 Prediction 0.1828 Cish RAID01869572 mmu-miR-665-5p miRNA MIMAT0017238 Cish mRNA 12700 Prediction 0.1828 Cish RAID01961829 mmu-miR-468-3p miRNA MIMAT0002109 Cish mRNA 12700 Prediction 0.1828 Cish RAID02044190 mmu-miR-3085-3p miRNA MIMAT0014879 Cish mRNA 12700 Prediction 0.2202 Cish RAID02090146 mmu-miR-6901-5p miRNA MIMAT0027702 Cish mRNA 12700 Prediction 0.1828 Cish RAID02090449 mmu-miR-455-3p miRNA MIMAT0003742 Cish mRNA 12700 Prediction 0.1828 Cish RAID02129266 mmu-miR-5709-3p miRNA MIMAT0027104 Cish mRNA 12700 Prediction 0.1828 Cish RAID02251772 mmu-miR-5127 miRNA MIMAT0020638 Cish mRNA 12700 Prediction 0.1828 Cish RAID02436835 mmu-miR-3064-5p miRNA MIMAT0014834 Cish mRNA 12700 Prediction 0.1828 Cish RAID02481669 mmu-miR-98-5p miRNA MIMAT0000545 Cish mRNA 12700 Prediction 0.1828 Cish RAID02538105 mmu-miR-125a-3p miRNA MIMAT0004528 Cish mRNA 12700 CLIP-seq//Prediction 0.6308 Cish RAID02685818 mmu-miR-200a-3p miRNA MIMAT0000519 Cish mRNA 12700 CLIP-seq//Prediction 0.6308 Cish RAID02732308 mmu-miR-3087-5p miRNA MIMAT0014895 Cish mRNA 12700 Prediction 0.1828 Cish RAID02750683 mmu-miR-141-3p miRNA MIMAT0000153 Cish mRNA 12700 CLIP-seq//Prediction 0.6308 Cish RAID02827149 mmu-miR-214-3p miRNA MIMAT0000661 Cish mRNA 12700 CLIP-seq//Prediction 0.6308 Cish RAID02828894 mmu-miR-200b-3p miRNA MIMAT0000233 Cish mRNA 12700 Prediction 0.1828 Cish RAID02855603 mmu-miR-882 miRNA MIMAT0004847 Cish mRNA 12700 Prediction 0.2202 Cish RAID02860148 mmu-miR-7214-5p miRNA MIMAT0028396 Cish mRNA 12700 Prediction 0.1828 Cish RAID02886824 mmu-miR-3083-5p miRNA MIMAT0014874 Cish mRNA 12700 Prediction 0.1828 Cish RAID02913429 mmu-miR-384-3p miRNA MIMAT0001076 Cish mRNA 12700 CLIP-seq//Prediction 0.6308 Cish RAID03101492 mmu-miR-7033-5p miRNA MIMAT0027970 Cish mRNA 12700 Prediction 0.1828 Cish RAID03133455 mmu-miR-762 miRNA MIMAT0003892 Cish mRNA 12700 Prediction 0.1828 Cish RAID03135688 mmu-miR-709 miRNA MIMAT0003499 Cish mRNA 12700 Prediction 0.1828 Cish RAID03141122 mmu-miR-7016-3p miRNA MIMAT0027937 Cish mRNA 12700 Prediction 0.1828 Cish RAID03146947 mmu-miR-134-5p miRNA MIMAT0000146 Cish mRNA 12700 Prediction 0.1828 Cish RAID03202044 mmu-miR-429-3p miRNA MIMAT0001537 Cish mRNA 12700 Prediction 0.1828 Cish RAID03204324 mmu-miR-3473a miRNA MIMAT0015645 Cish mRNA 12700 Prediction 0.1828 Cish RAID03261549 mmu-miR-196b-5p miRNA MIMAT0001081 Cish mRNA 12700 Prediction 0.1828 Cish RAID03261656 mmu-miR-6715-5p miRNA MIMAT0029876 Cish mRNA 12700 Prediction 0.1828 Cish RAID03264659 mmu-miR-214-5p miRNA MIMAT0004664 Cish mRNA 12700 Prediction 0.1828 Cish RAID03289919 mmu-miR-31-5p miRNA MIMAT0000538 Cish mRNA 12700 Prediction 0.1828 Cish RAID03369811 mmu-miR-466l-3p miRNA MIMAT0005830 Cish mRNA 12700 Prediction 0.2202 Cish RAID03426622 mmu-miR-375-3p miRNA MIMAT0000739 Cish mRNA 12700 CLIP-seq 0.5483 Cish RAID03535326 mmu-miR-27a-3p miRNA MIMAT0000537 Cish mRNA 12700 CLIP-seq 0.5483 Cish RAID03588561 mmu-miR-1934-5p miRNA MIMAT0009398 Cish mRNA 12700 Prediction 0.1828 Cish RAID03620998 mmu-miR-1931 miRNA MIMAT0009394 Cish mRNA 12700 Prediction 0.1828 Cish RAID03851703 mmu-miR-217-5p miRNA MIMAT0000679 Cish mRNA 12700 CLIP-seq//Prediction 0.6308 Cish RAID03894663 mmu-miR-328-3p miRNA MIMAT0000565 Cish mRNA 12700 Prediction 0.1828 Cish RAID03911322 mmu-miR-873a-5p miRNA MIMAT0004936 Cish mRNA 12700 CLIP-seq//Prediction 0.6308 Cish RAID03981008 mmu-miR-7051-5p miRNA MIMAT0028006 Cish mRNA 12700 Prediction 0.1828 Cish RAID04060655 mmu-miR-30c-1-3p miRNA MIMAT0004616 Cish mRNA 12700 Prediction 0.1828