DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Cdc16; Anapc6 ATTTA 118-1980 2111-2115

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 69957 Cdc16 cguUCCGUCACCGGACAU-GUCa || :||| | |||| ||| aguAGUUAGUUACGUGUAGCAGa 2 20 210 232 [mm9:8:13781841-13781863:+] 0.5539 123 0 -13.08 -1.0178 MIMAT0000745 mmu-miR-380-3p 69957 Cdc16 uuCUACAC-CUGGUAUGAUGUAu |||||| ||| ||||||| cuGAUGUGACUCCAGACUACAUc 2 21 103 125 [mm9:8:13781734-13781756:+] 0.5849 167 7 -21.00 -0.4487 MIMAT0002111 mmu-miR-470 69957 Cdc16 ugaGUGGUCACGGU-CAGG-UUCUu || | |||:| |||| |||| cugCAGCCUUGCUACGUCCUAAGAa 2 21 67 91 [mm9:8:13781698-13781722:+] 0.5451 127 0 -20.67 -0.9941 MIMAT0004820 mmu-miR-744* 69957 Cdc16 uccaacuccaaucACCGUUGUc |||||||| ggacagcaggccuUGGCAACAg 2 10 161 182 [mm9:8:13781792-13781813:+] 0.5849 145 7 -18.66 -0.5179 MIMAT0003891 mmu-miR-770-3p 69957 Cdc16 ggUCGAGGUGCAGUCCGGGUGc || |||| :||||||| agAGGUCCA----GGGCCCACc 2 21 20 37 [mm9:8:13781651-13781668:+] 0.5441 147 7 -21.85 -0.3445 MIMAT0004823 mmu-miR-666-3p 69957 Cdc16 ucGUCC-GCUA--GUGCGACGUCGg :||| | || : | ||||||| agUAGGUCAAUGCUCCCCUGCAGCc 2 21 50 74 [mm9:8:13781681-13781705:+] 0.5451 146 7 -25.02 -0.1809 MIMAT0004839 mmu-miR-743b-5p 69957 Cdc16 acuaccuguggucAGACUUGu ||||||| uguuuuccgauuuUCUGAACc 2 9 184 204 [mm9:8:13781815-13781835:+] 0.5694 140 7 -10.90 -0.8974 MIMAT0004938 mmu-miR-875-3p 69957 Cdc16 guaucGGAGUCAUAAAA-GUCc ||| || ||||| ||| uacguCCUAAGAAUUUUCCAGu 2 17 79 100 [mm9:8:13781710-13781731:+] 0.5650 128 0 -11.44 -0.7120 MIMAT0005836 mmu-miR-1186 69957 Cdc16 guacggaaauuaagGUCGUGAg ||||||| -----------ccaCAGCACUg 2 9 1 11 [mm9:8:13781632-13781642:+] 0.6865 140 7 -10.96 -0.7003 MIMAT0007874 mmu-miR-1904 69957 Cdc16 ggagggagguCUCCUCGUCUUg | | ||||||| aguuaguuacGUGUAGCAGAAu 2 13 213 234 [mm9:8:13781844-13781865:+] 0.5539 144 7 -14.51 -0.8942 MIMAT0009390 mmu-miR-1927 69957 Cdc16 agUCAGGGAUUGUA-GGUCUCCAg || |: ||| | ||||||| acAGCACUGAACCUGACAGAGGUc 2 22 3 26 [mm9:8:13781634-13781657:+] 0.6865 152 7 -23.33 -0.4999 MIMAT0009391 mmu-miR-1928 69957 Cdc16 cuCGA-CCGU-UACAUCGa |:| | :| :|||||| uaGUUAGUUACGUGUAGCa 2 16 212 230 [mm9:8:13781843-13781861:+] 0.5539 125 6 -10.26 -0.1017 MIMAT0009392 mmu-miR-1929 69957 Cdc16 gaGACGAGAUAUUUCAGGA-UCUu | || :|: | ||||| ||| ugCAGCCUUGCUACGUCCUAAGAa 2 22 68 91 [mm9:8:13781699-13781722:+] 0.5451 121 0 -15.80 -0.9852 MIMAT0009394 mmu-miR-1931 69957 Cdc16 cgguagcGUGGUCGGGAA-CGUa || ||| |||| ||| agugggaCAGCAGGCCUUGGCAa 2 16 157 179 [mm9:8:13781788-13781810:+] 0.5849 123 0 -17.04 -0.7464 MIMAT0009398 mmu-miR-1934 69957 Cdc16 ucuccugcuucguccCCUGGUCu ||||||| acaucucuacauuuaGGACCAGc 2 9 121 143 [mm9:8:13781752-13781774:+] 0.5849 140 7 -13.35 -0.7260 MIMAT0009413 mmu-miR-1947 69957 Cdc16 gucGUGA-GUC-GAUCGA-GCAGGa | || ||| || ||| ||||| cucCCCUGCAGCCUUGCUACGUCCu 2 20 62 86 [mm9:8:13781693-13781717:+] 0.5451 125 0 -23.34 -0.6027 MIMAT0009433 mmu-miR-1960 69957 Cdc16 ucgggagaagauUGUCGUGACc ||||||||| ----------ccACAGCACUGa 2 11 1 12 [mm9:8:13781632-13781643:+] 0.6865 150 7 -14.62 -1.1903 MIMAT0009457 mmu-miR-1839-3p 69957 Cdc16 cgacaacCAUCUAUUCAUCCAGa ||: :|||||||| cccucauGUGCCAGAGUAGGUCa 2 17 36 58 [mm9:8:13781667-13781689:+] 0.4734 148 7 -14.08 -0.2718 MIMAT0009457 mmu-miR-1839-3p 69957 Cdc16 cgACAACCAUCUA-UUCAUCCAGa ||| | : || ||| ||||| cgUGUAGCAGAAUAAAGAAGGUCa 2 22 222 245 [mm9:8:13781853-13781876:+] 0.5539 128 0 -10.99 -0.1401 MIMAT0000153 mmu-miR-141 69957 Cdc16 gguaGAAAUGGUCUGUC-ACAAu | ||: || |||| |||| caggCCUUGGCA-ACAGAUGUUu 2 19 167 188 [mm9:8:13781798-13781819:+] 0.5694 120 0 -11.11 -0.3423 MIMAT0000162 mmu-miR-152 69957 Cdc16 gguucaagacaguaCGUGACu |||||| ---------ccacaGCACUGa 2 8 1 12 [mm9:8:13781632-13781643:+] 0.6865 120 6 -13.08 -0.1043 MIMAT0000516 mmu-miR-148a 69957 Cdc16 uguuucaagacaucaCGUGACu |||||| ----------ccacaGCACUGa 2 8 1 12 [mm9:8:13781632-13781643:+] 0.6865 120 6 -13.06 -0.1043 MIMAT0000517 mmu-miR-192 69957 Cdc16 ccgACAGUUAAGUAUCCAGUc || ||: :||||||| augUGCCAG--AGUAGGUCAa 2 19 41 59 [mm9:8:13781672-13781690:+] 0.4734 143 7 -13.57 -0.1421 MIMAT0000517 mmu-miR-192 69957 Cdc16 ccgacaguuaaguaUCCAGUc |||||| uagcagaauaaagaAGGUCAa 2 8 226 246 [mm9:8:13781857-13781877:+] 0.5539 120 6 -7.96 -0.1005 MIMAT0000519 mmu-miR-200a 69957 Cdc16 uguaGCAAUGGUCUGUC-ACAAu | ||: || |||| |||| caggCCUUGGCA-ACAGAUGUUu 2 19 167 188 [mm9:8:13781798-13781819:+] 0.5694 120 0 -10.76 -0.3423 MIMAT0000580 mmu-miR-148b 69957 Cdc16 uguuucaagacacuaCGUGACu |||||| ----------ccacaGCACUGa 2 8 1 12 [mm9:8:13781632-13781643:+] 0.6865 120 6 -12.93 -0.1043 MIMAT0000669 mmu-miR-221 69957 Cdc16 cuUUGGGUC-GUCUGU-UACAUCGa || :|| :|| :| :|||||| acAAAGUAGUUAGUUACGUGUAGCa 2 22 206 230 [mm9:8:13781837-13781861:+] 0.5539 135 6 -15.36 -0.1037 MIMAT0000670 mmu-miR-222 69957 Cdc16 uggGUC-AUCGGUCUACAUCGa :|| |||::| :|||||| aagUAGUUAGUUACGUGUAGCa 2 19 209 230 [mm9:8:13781840-13781861:+] 0.5539 145 6 -19.07 -0.1017 MIMAT0000904 mmu-miR-215 69957 Cdc16 cagACAGUUUAGUAUCCAGUa || ||:| :||||||| augUGCCAGA--GUAGGUCAa 2 19 41 59 [mm9:8:13781672-13781690:+] 0.4734 151 7 -14.07 -0.1407 MIMAT0000904 mmu-miR-215 69957 Cdc16 cagacaguuuaguaUCCAGUa |||||| uagcagaauaaagaAGGUCAa 2 8 226 246 [mm9:8:13781857-13781877:+] 0.5539 120 6 -9.64 -0.1005 MIMAT0001095 mmu-miR-370 69957 Cdc16 ugguccaaggugggGUCGUCCg ||||||| caguaacagugggaCAGCAGGc 2 9 150 171 [mm9:8:13781781-13781802:+] 0.5849 140 7 -18.91 -0.1527 MIMAT0004936 mmu-miR-873 69957 Cdc16 uccUC-UGAGUGUUCAAGGACg || |:|: | |||||||| cuaAGAAUUUUCCAGUUCCUGa 2 19 85 106 [mm9:8:13781716-13781737:+] 0.5650 157 7 -16.36 -0.9378 MIMAT0004941 mmu-miR-544 69957 Cdc16 cuCGAACGAUUUUUA-CGUCUUa |:| |:|| : :| |||||| uaGUUAGUUACGUGUAGCAGAAu 2 21 212 234 [mm9:8:13781843-13781865:+] 0.5539 124 6 -13.27 -0.8373

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G009883 Cdc16 Mus musculus 69957

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Cdc16 mmu-miR-683 beg:152 end:171 pic:3' CTCCTGTGTCGAA-TGTCGTCC 5'& ||||. |||||||| &5' ------ACAGTGGGACAGCAGG 3' Cdc16 mmu-miR-1960 beg:0 end:12 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& ||||||||| &5' ------------ACAGCACTG- 3' Cdc16 mmu-miR-1186 beg:1 end:11 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& ||||||| &5' --------------CAGCACT- 3' Cdc16 mmu-miR-666-3p beg:58 end:75 pic:3' TCGTCCGCTAGTGCGACGTCGG 5'& || || | |||||||| &5' -----GC--TCCC-CTGCAGCC 3' Cdc16 mmu-miR-744star beg:163 end:183 pic:3' TCCAAC-TCCAATCACCGTTGTC 5'& | ||| ||||||||| &5' -----GCAGGCCT-TGGCAACAG 3' Cdc16 mmu-miR-770-3p beg:19 end:37 pic:3' GGTCGAGGTGCAGTCCGGGTGC 5'& || |||| .||||||| &5' --AGGTCCA----GGGCCCAC- 3' Cdc16 mmu-miR-1839-3p beg:40 end:58 pic:3' CGACAACCATCTATTCATCCAGA 5'& ||. .|||||||| &5' -------GTGCCAGAGTAGGTC- 3' Cdc16 mcmv-miR-m21-1 beg:51 end:70 pic:3' GCCGAACTTGCACAGGGGATA 5'& ||. ||.| ||||||. &5' -GGTC--AATGC-TCCCCTG- 3' Cdc16 mmu-miR-148a beg:3 end:13 pic:3' TGTTTCAAGACATCACGTGACT 5'& ||||||| &5' ---------------GCACTGA 3' Cdc16 mmu-miR-150star beg:33 end:49 pic:3' GATAGGGGGTCCGGACATGGTC 5'& |||.|| |||.|||| &5' ----CCCTCA----TGTGCCAG 3' Cdc16 mmu-miR-152 beg:1 end:13 pic:3' GGTTCAAGACAGTACGTGACT 5'& || ||||||| &5' -----------CA-GCACTGA 3' Cdc16 mmu-miR-16star beg:137 end:162 pic:3' AGTCGTCG--TGTCAGTTATGACC 5'& ||||||| .|||| | ||| &5' -CAGCAGCCTGCAGTAAC-AGTGG 3' Cdc16 mmu-miR-182 beg:32 end:51 pic:3' GCCACACTCAAGATGGTA----ACGGTTT 5'& ||| |||||.| &5' -------------ACCCTCATGTGCCAGA 3' Cdc16 mmu-miR-192 beg:41 end:59 pic:3' CCGACAGTTAAGTATCCAGTC 5'& || ||. .||||||| &5' ---TGCCAGA--GTAGGTCA- 3' Cdc16 mmu-miR-1927 beg:1 end:27 pic:3' AGTCAGGGATTGTAG-GTCTCCAG 5'& ||| |. ||| |||||||| &5' -CAGCACTGAACCTGACAGAGGTC 3' Cdc16 mmu-miR-1959 beg:59 end:87 pic:3' GAGGTGACT------CGATGTAGGGG 5'& |||| ||| |||||.|||. &5' CTCCCCTGCAGCCTTGCTACGTCCT- 3' Cdc16 mmu-miR-1959 beg:111 end:129 pic:3' GAGGTGACTCGATGTAGGGG 5'& ||||| || |||||||.|. &5' CTCCA--GA-CTACATCTCT 3' Cdc16 mmu-miR-215 beg:39 end:59 pic:3' CAGACAGTTTAGTATCCAGTA 5'& | || ||.| .||||||| &5' -TGTGCCAGA--GTAGGTCA- 3' Cdc16 mmu-miR-222 beg:209 end:230 pic:3' TGGGTCATCGGTC----TACATCGA 5'& |||||..|| .|||||| &5' ----AGTAGTTAGTTACGTGTAGC- 3' Cdc16 mmu-miR-3475 beg:99 end:119 pic:3' AAGTTTGG--TACACGGAGGTCT 5'& || ||||| ||||||| &5' ------CCTGATGTGACTCCAGA 3' Cdc16 mmu-miR-378 beg:12 end:30 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& ||||| |.|||||| &5' ----CTGACAG-AGGTCCAG- 3' Cdc16 mmu-miR-380-3p beg:102 end:125 pic:3' TTCTACACCT-GGTATGATGTAT 5'& |||||| ||| ||||||| &5' --GATGTGACTCCAGACTACAT- 3' Cdc16 mmu-miR-450b-3p beg:173 end:195 pic:3' TACGTACGTT--TTAC-AAGGGTTA 5'& |||| .||| ||.||.|| &5' ------GCAACAGATGTTTTCCGAT 3' Cdc16 mmu-miR-503star beg:47 end:65 pic:3' GGTCCGTCA-CCTTTGTTATGAG 5'& ||| || ||||.||| &5' ------AGTAGGT--CAATGCTC 3' Cdc16 mmu-miR-677 beg:1 end:14 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& || ||||||| &5' ------------CAGCACTGAA 3' Cdc16 mmu-miR-705 beg:28 end:49 pic:3' ACGGGTGGG-GTGGAGGGTGG 5'& |||||||| ||. | ||| &5' -GCCCACCCTCATGTGCCA-- 3' Cdc16 mmu-miR-743b-5p beg:182 end:204 pic:3' ACTACCTGTGGTC---AGACTTGT 5'& ||| . ||. ||||||| &5' --ATGTTTTCCGATTTTCTGAAC- 3' Cdc16 mmu-miR-744 beg:57 end:79 pic:3' ACGACAATCGGGA--TCGGGGCGT 5'& |||| |||| ||||..|| &5' TGCTC----CCCTGCAGCCTTGC- 3' Cdc16 mmu-miR-7b beg:173 end:192 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& .|||||.| ||.|||| &5' GCAACAGAT------GTTTTCC- 3' Cdc16 mmu-miR-873 beg:86 end:105 pic:3' TCCTCTGAGTGTTCAAGGACG 5'& || .| | |||||||| &5' --GAATTTTCC-AGTTCCTG- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Cdc16; Anapc6 mmu-let-7a 60 86 -UGAU---AUGUUGG-AUGAUGGAGU :|| |:||:|| |:|||| || UGCUCCCCUGCAGCCUUGCUACGUCC Cdc16; Anapc6 mmu-let-7b 64 86 UUGGUGUGUUGG-AUGAUGGAGU || ::||:|| |:|||| || -CCCCUGCAGCCUUGCUACGUCC Cdc16; Anapc6 mmu-let-7c 64 86 UUGGUAUGUUGG-AUGAUGGAGU || |:||:|| |:|||| || -CCCCUGCAGCCUUGCUACGUCC Cdc16; Anapc6 mmu-let-7d 60 86 -UGAU---ACGUUGG-AUGAUGGAGA :|| ||||:|| |:|||| || UGCUCCCCUGCAGCCUUGCUACGUCC Cdc16; Anapc6 mmu-let-7e 60 86 -UGAU---AUGUUGGAG-GAUGGAGU :|| |:||:|||: |||| || UGCUCCCCUGCAGCCUUGCUACGUCC Cdc16; Anapc6 mmu-miR-103 38 72 -AGUAU-CGGGA-CAU---GUUACG-----ACGA ||||: ||| ||| |||||| ||| CUCAUGUGCCAGAGUAGGUCAAUGCUCCCCUGCA Cdc16; Anapc6 mmu-miR-124a 29 49 -CCGUAAGUGGC---GCACGGAAU ||| |||| :||||| GGGCC--CACCCUCAUGUGCCA-- Cdc16; Anapc6 mmu-miR-125a 1 33 -GUGUCCA-AUU-------UC-CCAGAGUCCCU ||||| |:| || |||| ||||| CCACAGCACUGAACCUGACAGAGGUC-CAGGGC Cdc16; Anapc6 mmu-miR-125b 1 33 AGUGUU----------CAAUC-CCAGAGUCCCU ||||: | || |||| ||||| CCACAGCACUGAACCUGACAGAGGUC-CAGGGC Cdc16; Anapc6 mmu-miR-133a 141 166 -UGUCG-AC--CAACUUC-CCCUGGUU :|||| || || || ||||| AGCAGCCUGCAGUAACAGUGGGACA-- Cdc16; Anapc6 mmu-miR-149 20 52 CCUCACUUCU-GUGCCU------------CGGUCU- ||:| || || |||||| ----AGAGGUCCAGGGCCCACCCUCAUGUGCCAGAG Cdc16; Anapc6 mmu-miR-184 64 87 UGGGAAUAGUCAA---GAGGCAGGU |||| ||| || ||||| CCCCUG--CAGCCUUGCUACGUCCU Cdc16; Anapc6 mmu-miR-192 43 60 -ACAGUUAAGUAUCCAGUC || ||: :||||||| GUGCCAGA--GUAGGUCAA Cdc16; Anapc6 mmu-miR-199a 133 164 CUUGUCCA-----UCAGAC----UUGUGACCC- :||| || ||| |||| |||| --UUAGGACCAGCAGCCUGCAGUAACAGUGGGA Cdc16; Anapc6 mmu-miR-199b 140 164 CUUGUCCA---UCAGAUUUGUGACCC- |:||| ||| |||| |||| CAGCAGCCUGCAGU---AACAGUGGGA Cdc16; Anapc6 mmu-miR-214 59 81 GACGGACAGACA-CGGA-CGACA |||: ||| |||| ||| AUGCUCCCCUGCAGCCUUGCUA- Cdc16; Anapc6 mmu-miR-215 41 60 CAGACAGUUUAGUAUCCAGUA | || ||:| :||||||| AUGUGCCAGA--GUAGGUCAA Cdc16; Anapc6 mmu-miR-23b 97 113 CCAUUAGGGACCGUUACACUA |:|:|||| |||||| --CAGUUCCUG---AUGUGAC Cdc16; Anapc6 mmu-miR-296 12 36 -UGUCCUAACUCCCC--CCCGGGA || || |||| |||||| AACCUGACAGAGGUCCAGGGCCCA Cdc16; Anapc6 mmu-miR-298 20 49 CCUUCU--UGUCGGGA-GGAG---ACGG- ||:| | :|||| |||| |||| AGAGGUCCAGGGCCCACCCUCAUGUGCCA Cdc16; Anapc6 mmu-miR-302c 155 177 GGUGACUUUGUACCUUCGUGAAC- || ||::||| |:|| |||| ACAGUGGGACAGC-AGGC-CUUGG Cdc16; Anapc6 mmu-miR-323 19 48 -UCUCCAG---CUGGCACAU--UACACG- ||||||| |:|| |||||| CAGAGGUCCAGGGCCCACCCUCAUGUGCC Cdc16; Anapc6 mmu-miR-324-3p 138 178 -GGUCGUCGUGG----------ACCC---CGUC----ACC |||||||| |: |||| |||| ||| ACCAGCAGC-CUGCAGUAACAGUGGGACAGCAGGCCUUGGC Cdc16; Anapc6 mmu-miR-326 14 37 UGAC---CUCCU--UCCCGGGUCUCC ||| |||| |||||||| CCUGACAGAGGUCCAGGGCCCAC--- Cdc16; Anapc6 mmu-miR-328 22 60 UGCCU--UCCCG---------------UCUCUCCCGGUC || ||||| |||| ||:|| -AGGUCCAGGGCCCACCCUCAUGUGCCAGAGUAGGUCAA Cdc16; Anapc6 mmu-miR-331 14 33 AAGAUCCUAUCCGGGUCCCCG ||: |||:|||||| -CCUGACAGAGGUCCAGGGC- Cdc16; Anapc6 mmu-miR-339 4 33 ACUCGA-----GGAC---CUCCU-GUCCCU ||| |||| |||| ||||| -CAGCACUGAACCUGACAGAGGUCCAGGGC Cdc16; Anapc6 mmu-miR-345 5 34 -CGUGAC-----CUGAUCCCCAG---UCGU |||||| ||| || |||| :|| AGCACUGAACCUGAC-AGAGGUCCAGGGCC Cdc16; Anapc6 mmu-miR-346 160 186 -UCUC-CGUCCGUGAGCCC--GUCUGU :|| |||||| ||:|| ||||: GGGACAGCAGGC-CUUGGCAACAGAUG Cdc16; Anapc6 mmu-miR-351 21 43 GUCCGAGUUUCCCGA---GGAGUCCCU |||: | ||||| ||||| GAGGUCC--AGGGCCCACCCUCAU--- Cdc16; Anapc6 mmu-miR-370 25 58 UUGGUCCAAGGUGGGG----------UCGUCCG- ||||| ||||||: ||:|||: -UCCAGGGCCCACCCUCAUGUGCCAGAGUAGGUC Cdc16; Anapc6 mmu-miR-378 5 33 -UGUGUCCUGGAC---CUCA--GUCCUC :||| | ||||| ||| ||||: AGCACUGAACCUGACAGAGGUCCAGGGC Cdc16; Anapc6 mmu-miR-380-3p 104 126 UUCUACACCU-GGUAUGAUGUAU |||||| ||| ||||||| -UGAUGUGACUCCAGACUACAUC Cdc16; Anapc6 mmu-miR-422b 5 31 CCG-GAA---GACUGAGGUUCAGGUC- || || ||||| |:|||||| AGCACUGAACCUGACAG-AGGUCCAGG Cdc16; Anapc6 mmu-miR-425 168 196 -CCGC--CUGUG--CUGUA-AGGGCUA- ||| |:|| ||::| |:||||| AGGCCUUGGCAACAGAUGUUUUCCGAUU Cdc16; Anapc6 mmu-miR-431 145 186 -GGACGUA---------CUG----CCGGA--CGU--UCUGU |||||| ||| ||||| ||| |||: GCCUGCAGUAACAGUGGGACAGCAGGCCUUGGCAACAGAUG Cdc16; Anapc6 mmu-miR-450b 130 154 AUAAGUCCU---UGUAUGACGUUUU |||:|||| :|| |||||: CAUUUAGGACCAGCAGCCUGCAGU- Cdc16; Anapc6 mmu-miR-470 66 93 AGUGGUC---ACGGU-CAGG-UUCUU- | ||| |||:| |||| ||||| CCUGCAGCCUUGCUACGUCCUAAGAAU Cdc16; Anapc6 mmu-miR-490 3 32 -GUCGU-AC---------CUCAGGAGGUCCAAC ||||| || ||| |||||| ACAGCACUGAACCUGACAGAGG--UCCAGGG-- Cdc16; Anapc6 mmu-miR-491 36 72 -GGAGUAC-C---UUC--CCA------AGGGG-UGA ||||||| | :|| ||| ||||| :| CCCUCAUGUGCCAGAGUAGGUCAAUGCUCCCCUGCA Cdc16; Anapc6 mmu-miR-500 8 34 -GACUUGGGAA-----CGGGUCCACGUA |||||||: |:||||| || ACUGAACCUGACAGAGGUCCAGG-GCC- Cdc16; Anapc6 mmu-miR-542-5p 173 195 GCACUGUA--CUACUAGGGGCUC ||:|| |||| |::|||| -UUGGCAACAGAUGUUUUCCGAU Cdc16; Anapc6 mmu-miR-652 5 37 ACGUG--UUGGGA----UCA-----CCGCGGUAA |||| ||||: || ||| ||| AGCACUGAACCUGACAGAGGUCCAGGGC-CCAC- Cdc16; Anapc6 mmu-miR-672 14 43 -GUGUGUGUCA------UGUGGUUGGAGU- | ||| || :| ||| ||||| CCUGACAGAGGUCCAGGGC-CCACCCUCAU Cdc16; Anapc6 mmu-miR-674 22 48 AUGUGGUGA-GGGUA-GAGU-CACG- : ||| |||| |||| |||| AGGUCCAGGGCCCACCCUCAUGUGCC Cdc16; Anapc6 mmu-miR-675-5p 28 50 UGACACCCGGGAA--AG-GCGUGGU- |||||| || :|::||| ----AGGGCCCACCCUCAUGUGCCAG Cdc16; Anapc6 mmu-miR-676 135 164 -UC-GAGUUGUUGGA-GUC-----CUGCC- :| | ||:||:||| ||| | || AGGAC-CAGCAGCCUGCAGUAACAGUGGGA Cdc16; Anapc6 mmu-miR-682 96 119 -GUCU--GAAGUGACACUGACGUC- ||| || ||||||| ||| CCAGUUCCUGA--UGUGACUCCAGA Cdc16; Anapc6 mmu-miR-683 134 172 CUCCUG---------------UGUCGAA-UGUCGUCC- ||||| ||||: |||||||| UAGGACCAGCAGCCUGCAGUAACAGUGGGACAGCAGGC Cdc16; Anapc6 mmu-miR-688 48 72 -CUUAUUCAU---C-AGCGGACGCU ||:||:|| | || ||||| AGAGUAGGUCAAUGCUCCCCUGCA- Cdc16; Anapc6 mmu-miR-689 135 166 -CCUGGGG--CGG-C-UCG----C-CCCUGC ||||| ||| | ||: | ||||| AGGACCAGCAGCCUGCAGUAACAGUGGGACA Cdc16; Anapc6 mmu-miR-709 62 87 -AGGAGGACGGA--GACGG---AGG- ||| ||||| :|||: ||| CUCC-CCUGCAGCCUUGCUACGUCCU Cdc16; Anapc6 mmu-miR-710 55 79 GAGUUGAGAGGGGU--UCUGAACC ||||: |||||| || |||| GUCAAUGCUCCCCUGCAGCCUUGC Cdc16; Anapc6 mmu-miR-712* 96 118 -GUUGUGGGCCCCCACUGAGCGU- ||: ||:| ||||||| || CCAGUUCCUGAU-GUGACUC-CAG Cdc16; Anapc6 mmu-miR-744 60 80 -CGACAAUCGGGA--UCGGGGCGU ||| |||| |||| || UGCUC----CCCUGCAGCCUUGCU Cdc16; Anapc6 mmu-miR-761 41 75 -ACACAGUCAA----AGU------GGGACGACG- |||| ||| ||| |||||| || AUGUGCCAGAGUAGGUCAAUGCUCCCCUGCAGCC Cdc16; Anapc6 mmu-miR-762 23 42 CGAGACAGGGCCGGGGUCGGGG- |||| || |||| ||:| ----GGUCCAGGGCCCACCCUCA Cdc16; Anapc6 mmu-miR-770-3p 138 178 -GGUCGA-GGUG--CA-------------GUCCGGGUGC- ||||| || || ||||||: | ACCAGCAGCCUGCAGUAACAGUGGGACAGCAGGCCUUGGC Cdc16; Anapc6 mmu-miR-96 29 61 -UCGUUUU----UACACGA--UCA--CGGUUU :|| |||||| ||| |:||| GGGCCCACCCUCAUGUGCCAGAGUAGGUCAAU Cdc16; Anapc6 mmu-miR-98 67 86 UUGUUAUGUU-GAAUGAUGGAGU |:||: |||:|||| || ----CUGCAGCCUUGCUACGUCC Cdc16; Anapc6 mmu-miR-192 52 59 ---------------------------ACAGUUAAGUAUCCAGUC || ||: :||||||| GACAGAGGUCCAGGGCCCACCCUCAUGUGCCAGA--GUAGGUCAA Cdc16; Anapc6 mmu-miR-215 52 59 C------------------------AGACAGUUUAGUAUCCAGUA | || ||:| :||||||| GACAGAGGUCCAGGGCCCACCCUCAUGUGCCAGA--GUAGGUCAA Cdc16; Anapc6 mmu-miR-370 164 171 --------UUGGUCCAAGGUGGG---------------GUCGUCCG :||||| :||: |||||||| ACAUUUAGGACCAGCA---GCCUGCAGUAACAGUGGGACAGCAGGCC Cdc16; Anapc6 mmu-miR-380-3p 118 125 UU--------------------CUACACCU-GGUAUGAUGUAU |||||| ||| ||||||| UCCUAAGAAUUUUCCAGUUCCUGAUGUGACUCCAGACUACAUC Cdc16; Anapc6 mmu-miR-683 163 170 C------UCCUG---------------UGUCGAA-UGUCGUCC ||||| ||||: |||||||| UACAUUUAGGACCAGCAGCCUGCAGUAACAGUGGGACAGCAGGC Cdc16; Anapc6 mmu-let-7a 64 85 ugauAUGUUGG-AUGAUGGAGu |:||:|| |:|||| || ccccTGCAGCCTTGCTACGTCc Cdc16; Anapc6 mmu-let-7b 63 85 uuGGUGUGUUGG-AUGAUGGAGu || ::||:|| |:|||| || tcCCCTGCAGCCTTGCTACGTCc Cdc16; Anapc6 mmu-let-7c 63 85 uuGGUAUGUUGG-AUGAUGGAGu || |:||:|| |:|||| || tcCCCTGCAGCCTTGCTACGTCc Cdc16; Anapc6 mmu-let-7d 64 85 ugauACGUUGG-AUGAUGGAGa ||||:|| |:|||| || ccccTGCAGCCTTGCTACGTCc Cdc16; Anapc6 mmu-let-7e 64 85 ugauAUGUUGGAG-GAUGGAGu |:||:|||: |||| || ccccTGCAGCCTTGCTACGTCc Cdc16; Anapc6 mmu-miR-103 39 66 AGUAU-CGG-GACAU---GUUACGACGa ||||: ||| ||| ||||||| | TCATGTGCCAGAGTAGGTCAATGCTCCc Cdc16; Anapc6 mmu-miR-124a 30 50 CCGUAAGUG-GCGCACGGaau ||| | | | :||||| GGCCCACCCTCATGTGCCaga Cdc16; Anapc6 mmu-miR-125a 7 32 GUGUC---CAAUUUC-CCAGAGUCCCu ||| | | | || |||| ||||| CACTGAACCTGACAGAGGTC-CAGGGc Cdc16; Anapc6 mmu-miR-125b 11 32 agUGUUCAAUC-CCAGAGUCCCu || | || |||| ||||| gaACCTGACAGAGGTC-CAGGGc Cdc16; Anapc6 mmu-miR-133a 142 167 uGUC-GAC--CAACUUC-CCCUGguu ||| ||| || || ||||| gCAGCCTGCAGTAACAGTGGGACagc Cdc16; Anapc6 mmu-miR-149 6 30 CCUCACUU---CUGUGCCUC--GGUCu | | |||| |||| ||| |||| GCACTGAACCTGACA--GAGGTCCAGg Cdc16; Anapc6 mmu-miR-184 63 86 uGGGAAUAGUC--AA-GAGGCAGGu ||| |: ||| || || ||||| tCCCCTG-CAGCCTTGCTACGTCCt Cdc16; Anapc6 mmu-miR-193 158 176 gACCCUGAAACAUCCGGucaa |||||| | ||||| gTGGGAC--AGCAGGCCttgg Cdc16; Anapc6 mmu-miR-199a 136 162 CUUGUCCAUCAGAC----UUGUGACCC |:|| | || ||| |||| |||| GGACCAGCAGCCTGCAGTAACAGTGGG Cdc16; Anapc6 mmu-miR-199b 136 162 CUUGUCCAUCAGAU----UUGUGACCC |:|| | || ||: |||| |||| GGACCAGCAGCCTGCAGTAACAGTGGG Cdc16; Anapc6 mmu-miR-214 43 73 gACGG----A--CAGACAC----GGACGACa |||| | ||| || ||||| | gTGCCAGAGTAGGTCAATGCTCCCCTGCAGc Cdc16; Anapc6 mmu-miR-23b 95 112 ccaUUAGGGACCGUUACACUa |:|:||| :|||||| tccAGTTCCT---GATGTGAc Cdc16; Anapc6 mmu-miR-24* 146 173 uGAC--UAUAGUCG---AGUCAUCCGug ||| :|| |||: ||| |||| cCTGCAGTAACAGTGGGACAGCAGGCct Cdc16; Anapc6 mmu-miR-296 13 35 UGUCCUAACUCC--CCCCCGGGa || || |||| |||||| ACCTGACAGAGGTCCAGGGCCCa Cdc16; Anapc6 mmu-miR-302c 147 175 GGUGACUUUGU-ACCU--UCGU---GAAC |::| | |||| |||: |||| |||| CTGCAGTAACAGTGGGACAGCAGGCCTTG Cdc16; Anapc6 mmu-miR-323 20 46 UCUCCAG---CUGG--CACAUUACACG ||||||| |:|| | |||||| AGAGGTCCAGGGCCCACCCTCATGTGC Cdc16; Anapc6 mmu-miR-324-3p 139 155 GGUCGUCGUGGACCCCGUCAcc ||||||| ||| ||||| CCAGCAG--CCT---GCAGTaa Cdc16; Anapc6 mmu-miR-326 8 32 UGACCU--CCU-UC-CCGGGUCUCc |||| | || || ||:||||:| ACTGAACCTGACAGAGGTCCAGGGc Cdc16; Anapc6 mmu-miR-328 8 35 UGCCUU--CCCGUCUC----UCCCGGuc || ||| | ||||| |||||| ACTGAACCTGACAGAGGTCCAGGGCCca Cdc16; Anapc6 mmu-miR-331 13 33 aaGAUCCUAUCCGGGUCCCcg ||: | |||:|||||| acCTGACAGAGGTCCAGGGcc Cdc16; Anapc6 mmu-miR-339 3 25 acUCGAGGACCU--CCUGUC-CCu ||| ||| | ||||| || acAGC-ACTGAACCTGACAGAGGt Cdc16; Anapc6 mmu-miR-345 6 31 CGUGAC-----CUGAUCCCCA-GUCgu |||||| ||| || ||| ||| GCACTGAACCTGAC-AGAGGTCCAGgg Cdc16; Anapc6 mmu-miR-346 162 181 ucucCGUCCGUGAGCCCGUCUGU |||||| ||: |||| ||| gacaGCAGGC-CTT-GGCA-ACA Cdc16; Anapc6 mmu-miR-351 19 45 GUC-CGAGUUUCCCG--AGGAGUCCcu ||| | || |:|| | ||||| | CAGAGGTCCAGGGCCCACCCTCATGtg Cdc16; Anapc6 mmu-miR-370 144 171 UUGGUC--CAAGGUGG---GGUCGUCCG |:|| | || || : |||||||| AGCCTGCAGTAACAGTGGGACAGCAGGC Cdc16; Anapc6 mmu-miR-370 49 74 uUGGUCCA---AGGUGGGGUCGUCcg | :|||| | | |||| |||| gAGTAGGTCAATGCTCCCCTGCAGcc Cdc16; Anapc6 mmu-miR-378 6 32 uGUGUCCUGGAC---CU-CA-GUCCuc ||| | ||||| || || |||| gCACTGAACCTGACAGAGGTCCAGGgc Cdc16; Anapc6 mmu-miR-380-3p 103 125 uuCUACAC-CUGGUAUGAUGUAu |||||| ||| ||||||| ctGATGTGACTCCAGACTACATc Cdc16; Anapc6 mmu-miR-422b 9 29 ccggaaGACUGAGGUUCAGGUC ||||| |:|||||| ctgaacCTGAC-AGAGGTCCAG Cdc16; Anapc6 mmu-miR-425 169 194 CCG---CCUGUG-CUGU-AAGGGCUA ||| || || ||:: ||:||||| GGCCTTGGCAACAGATGTTTTCCGAT Cdc16; Anapc6 mmu-miR-431 146 173 GGACGU-ACUG----CCGGACGUUCUGu |||||| | || || | |||:| | CCTGCAGTAACAGTGGGACAGCAGGCCt Cdc16; Anapc6 mmu-miR-450b 130 154 aUAAGUCC---UUGUAUGACGUuuu |||:||| |:|| ||||| cATTTAGGACCAGCAGCCTGCAgta Cdc16; Anapc6 mmu-miR-470 69 91 aGUGGUCACGGU-CAGG-UUCUU || | |||:| |||| ||||| gCAGCCTTGCTACGTCCTAAGAA Cdc16; Anapc6 mmu-miR-490 4 33 GUCGU-AC-----C--UCAGGAGGUCCaac ||||| || | || |||||| CAGCACTGAACCTGACAGAGGTCCAGGgcc Cdc16; Anapc6 mmu-miR-491 37 70 GGAGUAC-----CU--UCC-----CAAGGGGuga ||||||| || ||| | ||||| CCTCATGTGCCAGAGTAGGTCAATGCTCCCCtgc Cdc16; Anapc6 mmu-miR-500 9 29 GACUUGGGAAC-GGGUCCACGUa ||||||| || | |||| || CTGAACC--TGACAGAGGTCCAg Cdc16; Anapc6 mmu-miR-542-5p 172 194 GCACUGU--ACUACUAGGGGCUc | ||:|| |||| |::|||| CTTGGCAACAGATGTTTTCCGAt Cdc16; Anapc6 mmu-miR-652 30 50 aCGUGUUGGGAUCACCGCGGUaa || | ||||| | |:|||| gGC-CCACCCTCAT-GTGCCAga Cdc16; Anapc6 mmu-miR-672 17 41 gUGUGU----GUCAUGUGGUUGGAGU ||| | ||| :| ||| ||||| gACAGAGGTCCAGGGC-CCACCCTCA Cdc16; Anapc6 mmu-miR-675-5p 18 38 UGACACCCGGGAAAGGCGUGGu || | || || || |||| ACAGAGGTCCAGGGCC-CACCc Cdc16; Anapc6 mmu-miR-676 123 141 UCGAGUUGUUGGAGUCCUGcc | ||| ||| :|:||||| ATCTCTACA--TTTAGGACca Cdc16; Anapc6 mmu-miR-682 97 117 GUCUGAAG--UGACACUGACGUC ||| ||| : ||||||| ||| CAG--TTCCTGATGTGACTCCAG Cdc16; Anapc6 mmu-miR-683 150 170 cUCCUGUGUCG-AAUGUCGUCC || | ||||: |||||||| cAGTA-ACAGTGGGACAGCAGG Cdc16; Anapc6 mmu-miR-683 126 146 cuccugugucgaauGUCGUCc |||||| tctacatttaggacCAGCAGc Cdc16; Anapc6 mmu-miR-688 49 72 CUUAUUCA--U-C-AGCGGACGcu ||:||:|| | | || ||||| GAGTAGGTCAATGCTCCCCTGCag Cdc16; Anapc6 mmu-miR-689 136 165 CCUGG--GGCGG-C-UC---G-C-CCCUGc ||||| | ||| | || | | ||||| GGACCAGCAGCCTGCAGTAACAGTGGGACa Cdc16; Anapc6 mmu-miR-709 60 77 AGGAGGACGGA-GACGGAgg | |||| ||| | |||| TGCTCC--CCTGCAGCCTtg Cdc16; Anapc6 mmu-miR-712* 97 117 GUUGUGGGCCCCCACUGAGcgu ||:: :|| | ||||||| CAGT-TCCTGATGTGACTCcag Cdc16; Anapc6 mmu-miR-744 57 79 cgacaaucGGGA--UCGGGGCGu |||| ||||::|| caatgctcCCCTGCAGCCTTGCt Cdc16; Anapc6 mmu-miR-761 52 73 acaCAGUCAAAGUGGGACGACG |||| | : |||||| || tagGTCAATGCTCCCCTGCAGC Cdc16; Anapc6 mmu-miR-762 19 40 cgagaCAGGGCCGGGGUCGGGG |||| || |||| ||:| cagagGTCCAGGGCCCACCCTC Cdc16; Anapc6 mmu-miR-770-3p 121 143 gGUCGAGGUG-CAGUCCGGGUgc || |||:|| |:||| ||| aCATCTCTACATTTAGGACCAgc Cdc16; Anapc6 mmu-miR-96 28 50 ucguuuuuacacgauCACGGUUU ||||||:| agggcccaccctcatGTGCCAGA Cdc16; Anapc6 mmu-miR-98 63 85 uuguuAUGUU-GAAUGAUGGAGu |:||: |||:|||| || tccccTGCAGCCTTGCTACGTCc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cdc16 RAID00128189 mmu-miR-148a-3p miRNA MIMAT0000516 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID00368902 mmu-miR-200a-3p miRNA MIMAT0000519 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID00455781 mmu-miR-192-5p miRNA MIMAT0000517 Cdc16 mRNA 69957 CLIP-seq//Prediction 0.6308 Cdc16 RAID00806036 mmu-miR-6932-5p miRNA MIMAT0027764 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID00955627 mmu-miR-222-3p miRNA MIMAT0000670 Cdc16 mRNA 69957 CLIP-seq//Prediction 0.6308 Cdc16 RAID01168857 mmu-miR-7659-3p miRNA MIMAT0029825 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID01541718 mmu-miR-325-3p miRNA MIMAT0004640 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID01869069 mmu-miR-370-3p miRNA MIMAT0001095 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID01937377 mmu-miR-215-5p miRNA MIMAT0000904 Cdc16 mRNA 69957 CLIP-seq//Prediction 0.6308 Cdc16 RAID02201182 mmu-miR-873a-5p miRNA MIMAT0004936 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID02414192 mmu-miR-148b-3p miRNA MIMAT0000580 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID02688063 mmu-miR-141-3p miRNA MIMAT0000153 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID02935695 mmu-miR-152-3p miRNA MIMAT0000162 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID02968362 mmu-miR-7067-5p miRNA MIMAT0028038 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID03060367 mmu-miR-1904 miRNA MIMAT0007874 Cdc16 mRNA 69957 Prediction 0.1828 Cdc16 RAID03209183 mmu-miR-544-3p miRNA MIMAT0004941 Cdc16 mRNA 69957 CLIP-seq//Prediction 0.6308 Cdc16 RAID03616129 mmu-miR-221-3p miRNA MIMAT0000669 Cdc16 mRNA 69957 CLIP-seq//Prediction 0.6308