DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000586 mmu-miR-340-3p 56424 Stub1 cgauaUUUCAUUGA-CUCUGCCu ::|| | || ||||||| gcccaGGAGGAUCUGGAGACGGa 2 18 27 49 [mm9:17:25967781-25967803:-] 0.4878 152 7 -20.33 -0.1828 MIMAT0003376 mmu-miR-302c 56424 Stub1 ggUGACUUUGUACCUUCGUGAa | | ||:: || :|||||| guAAUAAAGUCUGUGAGCACUa 2 21 228 249 [mm9:17:25967581-25967602:-] 0.5138 144 6 -10.58 -0.1130 MIMAT0003894 mmu-miR-764-5p 56424 Stub1 uccuccuguACACUCGUGg ||||||||| aauaaagucUGUGAGCACu 2 11 230 248 [mm9:17:25967582-25967600:-] 0.5138 150 7 -16.57 -0.7738 MIMAT0003895 mmu-miR-764-3p 56424 Stub1 ugucAACGG--UGAUAC-CGGAGGa ||||: || ||| |||||| ccccUUGCUGGACCAUGAGCCUCCc 2 19 137 161 [mm9:17:25967669-25967693:-] 0.4779 129 6 -18.94 -0.1145 MIMAT0003492 mmu-miR-702 56424 Stub1 cucgcCCCAUUUCCCACCCGu |||| :||||||||| agaguGGGU-GAGGGUGGGCu 2 17 182 201 [mm9:17:25967629-25967648:-] 0.5228 162 7 -34.94 -0.1251 MIMAT0004839 mmu-miR-743b-5p 56424 Stub1 acuACCUGUGGUC-AGACUUGu || |: :| ||||||| cccUGCUGAUGGGUUCUGAACu 2 19 97 118 [mm9:17:25967712-25967733:-] 0.4903 141 7 -17.22 -0.2662 MIMAT0004848 mmu-miR-883a-5p 56424 Stub1 caUUGACGAUGAAGAGAGUCGu ||||||| | :||||||| ugAACUGCUCCCCUUCUCAGCa 2 21 113 134 [mm9:17:25967696-25967717:-] 0.4903 172 7 -25.95 -0.2152 MIMAT0005836 mmu-miR-1186 56424 Stub1 guacggaaauuaaggUCGUGAg |||||| guaauaaagucugugAGCACUa 2 8 228 249 [mm9:17:25967581-25967602:-] 0.5138 120 6 -12.50 -0.1152 MIMAT0009408 mmu-miR-1943 56424 Stub1 agguccaCGGGU-CUAGGAGGGAa | ||| || ||||||| cuugcugGACCAUGAGCCUCCCUu 2 17 140 163 [mm9:17:25967667-25967690:-] 0.4779 155 7 -24.91 -0.2371 MIMAT0011214 mmu-miR-2138 56424 Stub1 uaaGGCGGUUCGGGCA-AGGGAa |:|: ||:::|| ||||| uccCUGUAUAGUUUGUGUCCCUg 2 20 58 80 [mm9:17:25967750-25967772:-] 0.5027 123 0 -19.09 -0.1231 MIMAT0000124 mmu-miR-15b 56424 Stub1 acAUUUGGUACUACACGACGAu |:::|:: |:| ||||||| ggUGGGCUGAGGU-UGCUGCUg 2 21 194 214 [mm9:17:25967616-25967636:-] 0.5183 154 7 -22.29 -0.1301 MIMAT0000526 mmu-miR-15a 56424 Stub1 guGUUUGGUAAUACACGACGAu ::::|:: :| ||||||| ggUGGGCUGAGGU-UGCUGCUg 2 21 194 214 [mm9:17:25967616-25967636:-] 0.5183 142 7 -13.08 -0.1314 MIMAT0000548 mmu-miR-322 56424 Stub1 agguuuuguACU-UAACGACGAc ||| :|||||||| agggugggcUGAGGUUGCUGCUg 2 14 192 214 [mm9:17:25967616-25967638:-] 0.5183 152 7 -20.57 -0.1404 MIMAT0003453 mmu-miR-497 56424 Stub1 auGUUUGGUGUCACACGACGAc ::::|:: :|| ||||||| ggUGGGCUGAGGU-UGCUGCUg 2 21 194 214 [mm9:17:25967616-25967636:-] 0.5183 150 7 -19.37 -0.1301

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G013508 Stub1 Mus musculus 56424

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Stub1 mmu-miR-1943 beg:146 end:164 pic:3' AGGTCCACGGGT-CTAGGAGGGAA 5'& ||| || |||||||| &5' ---------CCATGAGCCTCCCTT 3' Stub1 mcmv-miR-m108-2-5p.2 beg:174 end:193 pic:3' CACTGGCGAGCGCT-GCTCACT 5'& ||| | || .|.|||| &5' ------GCTGGAGAGTGGGTGA 3' Stub1 mcmv-miR-m21-1 beg:149 end:166 pic:3' GCCGAACTTGCACAGGGGATA 5'& |||.| ||||.|.| &5' -----TGAGCC--TCCCTTGT 3' Stub1 mcmv-miR-M23-2 beg:73 end:94 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& || || |.|| |||||||| &5' CC-CTGGGCCT--GCCCCCAT 3' Stub1 mcmv-miR-M87-1 beg:202 end:228 pic:3' CGACGGCGACGGCTGCCGAC-GGA 5'& |.|||.|||||.| | ||| ||| &5' GTTGCTGCTGCTG-CCACTGTCCT 3' Stub1 mcmv-miR-M87-1 beg:196 end:220 pic:3' CGACGGCGACGGCTGCCGACGGA 5'& |||| |.|||.| | |||||| &5' GCTGAGGTTGCTG-CTGCTGCC- 3' Stub1 mmu-let-7c beg:144 end:164 pic:3' TTGGTATGTTGGATGATGGAGT 5'& .|||||. |.||| |||. &5' GACCATG-AGCCTC---CCTT- 3' Stub1 mmu-let-7gstar beg:48 end:70 pic:3' CGTTCCGTCACCGGACATGTCA 5'& || |||| ||||||.||| &5' GCTC--CAGTC-CCTGTATAGT 3' Stub1 mmu-miR-124star beg:233 end:248 pic:3' TAGTTCCAGGC-GACACTTGTGC 5'& | ||||||.||| &5' ----------GTCTGTGAGCAC- 3' Stub1 mmu-miR-135astar beg:39 end:66 pic:3' GCGGTGC---CGAGGTTAGGGATAT 5'& | ||| ||||||.|||||.|| &5' -GAGACGGAAGCTCCAGTCCCTGTA 3' Stub1 mmu-miR-145star beg:26 end:36 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||||||. &5' --------------CCAGGAG- 3' Stub1 mmu-miR-16 beg:196 end:218 pic:3' GCGGTTATAAATGCACGACGAT 5'& || | ||.| |||||||. &5' -GCTGAGG-TTGC-TGCTGCTG 3' Stub1 mmu-miR-1906 beg:195 end:213 pic:3' TCGGGACGGAGTCCGACGACGT 5'& | || |||.|||||| &5' ------GGCTGAGGTTGCTGC- 3' Stub1 mmu-miR-1907 beg:196 end:217 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& .|. ||.|. |||||||| &5' GCTG--AGGTTG-CTGCTGCT- 3' Stub1 mmu-miR-1946a beg:0 end:21 pic:3' TTTTCACACACGGTGGT----GACGGGCCGA 5'& ||| ||| |||||.||| &5' ----------GCC-CCATGTCCTGCCTGGC- 3' Stub1 mmu-miR-1946b beg:0 end:21 pic:3' TTTTCGTACACGGTGGT----GACGGGCCG 5'& ||| ||| |||||.||| &5' ----------GCC-CCATGTCCTGCCTGGC 3' Stub1 mmu-miR-1948 beg:5 end:20 pic:3' GACATGCTCACGAGACGGATTT 5'& || ||||||.. &5' ---------TGTCCTGCCTGG- 3' Stub1 mmu-miR-1952 beg:181 end:199 pic:3' GTC-TTC-CTCCCACCTCT 5'& || ..| ||||||||. &5' -AGTGGGTGAGGGTGGG-- 3' Stub1 mmu-miR-1957 beg:207 end:224 pic:3' CAGTATACGA-GATGGTGAC 5'& |||| ||.|||||| &5' ------TGCTGCTGCCACTG 3' Stub1 mmu-miR-1959 beg:72 end:91 pic:3' GAGGTGACTC-GATGTAGGGG 5'& ||| |||.| ||.| |||| &5' -TCC-CTGGGCCTGC--CCCC 3' Stub1 mmu-miR-2134 beg:16 end:35 pic:3' CGTGGGGCAAAGGGTTCTG 5'& ||||||.| ||||.|| &5' GCACCCTGG--CCCAGGA- 3' Stub1 mmu-miR-218-2star beg:137 end:154 pic:3' GCGCCACGAACTGTCTTGGTAC 5'& |||| | |.|||||| &5' -------CTTG-CTGGACCATG 3' Stub1 mmu-miR-24 beg:65 end:85 pic:3' GACAAGGACGACTTGACTCGGT 5'& |||. ||. |||.||| &5' --GTTTGTGTCC--CTGGGCC- 3' Stub1 mmu-miR-3099star beg:31 end:54 pic:3' GTTCCC-GACCTT--CCTTCGACC 5'& .||| |||||. ||||||| &5' -GAGGATCTGGAGACGGAAGCT-- 3' Stub1 mmu-miR-322 beg:194 end:215 pic:3' AGGTTTTGTACT-TAACGACGAC 5'& ...| ||| .||||||||| &5' ----GGGC-TGAGGTTGCTGCTG 3' Stub1 mmu-miR-338-3p beg:127 end:149 pic:3' GTTGTTTTAGTGACT-ACGACCT 5'& ||.|| .|| ||||||| &5' CAGCA----TACCCCTTGCTGGA 3' Stub1 mmu-miR-34a beg:208 end:226 pic:3' TGTTGGTCGATT-CTGTGACGGT 5'& |||. | |||||.| &5' -------GCTGCTGCCACTGTC- 3' Stub1 mmu-miR-449a beg:208 end:226 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||| .| |||||.| &5' ----GCT-GCTGC-CACTGTC- 3' Stub1 mmu-miR-466g beg:233 end:243 pic:3' ACACACACGTACACAGACATA 5'& ||||||. &5' -------------GTCTGTG- 3' Stub1 mmu-miR-688 beg:233 end:244 pic:3' CTTATTCATCAGCGGACGCT 5'& |.|||.|| &5' ------------GTCTGTGA 3' Stub1 mmu-miR-702 beg:180 end:201 pic:3' CTCGCCCCATTTCCCACCCGT 5'& |||.||| .||||||||| &5' GAGTGGGT--GAGGGTGGGC- 3' Stub1 mmu-miR-743b-5p beg:101 end:118 pic:3' ACTACCTGTGGTCAGACTTGT 5'& |||||. ||||||| &5' -GATGGGT-----TCTGAAC- 3' Stub1 mmu-miR-744 beg:0 end:16 pic:3' ACGACAATCGGGAT-CGGGGCGT 5'& .|||| |.||.|| &5' -------GGCCCCATGTCCTGC- 3' Stub1 mmu-miR-744 beg:47 end:66 pic:3' ACGACAATCGGGATC-GGGGCGT 5'& |||.| || |||.|.| &5' -------AGCTCCAGTCCCTGTA 3' Stub1 mmu-miR-764-5p beg:236 end:248 pic:3' TCCTCCTGTACACTCGTGG 5'& |||||||||. &5' ---------TGTGAGCACT 3' Stub1 mmu-miR-883a-5p beg:113 end:135 pic:3' CATTGACGATGAAGAGAGTCGT 5'& ||||||| | .|||||||| &5' --AACTGCTCCCCTTCTCAGCA 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Stub1 RAID00234695 mmu-miR-451b miRNA MIMAT0025178 Stub1 mRNA 56424 Prediction 0.1828 Stub1 RAID00248025 mmu-miR-15a-5p miRNA MIMAT0000526 Stub1 mRNA 56424 CLIP-seq//Prediction 0.6308 Stub1 RAID00772165 mmu-miR-497a-5p miRNA MIMAT0003453 Stub1 mRNA 56424 CLIP-seq//Prediction 0.6308 Stub1 RAID01582970 mmu-miR-764-5p miRNA MIMAT0003894 Stub1 mRNA 56424 Western Blot//Reporter Assay//RT-PCR 0.9526 Stub1 RAID02345065 mmu-miR-322-5p miRNA MIMAT0000548 Stub1 mRNA 56424 CLIP-seq//Prediction 0.6308 Stub1 RAID02422761 mmu-miR-883a-5p miRNA MIMAT0004848 Stub1 mRNA 56424 Prediction 0.1828 Stub1 RAID03130031 mmu-miR-126b-5p miRNA MIMAT0029894 Stub1 mRNA 56424 Prediction 0.1828 Stub1 RAID03291951 mmu-miR-15b-5p miRNA MIMAT0000124 Stub1 mRNA 56424 CLIP-seq//Prediction 0.6308 Stub1 RAID03446226 mmu-miR-6986-5p miRNA MIMAT0027874 Stub1 mRNA 56424 Prediction 0.1828 Stub1 RAID03737372 mmu-miR-7072-5p miRNA MIMAT0028050 Stub1 mRNA 56424 Prediction 0.1828