DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Vps41 ATTTA 25-2586 2829-2833;3006-3010

DNA & RNA Element - circBase circRNA ID Chrom Start End Strand mmu_circ_0000435 chr13 18874515 18906162 + mmu_circ_0000437 chr13 18902300 18922662 + mmu_circ_0000436 chr13 18902300 18906162 +

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004541 mmu-miR-188-3p 218035 Vps41 acguuugggAC-GUACACCCUc || ||||||||| cuccuucagUGACAUGUGGGAa 2 13 468 489 [mm9:13:18958537-18958558:+] 0.5966 151 7 -17.73 -0.6304 MIMAT0000230 mmu-miR-199a-3p 218035 Vps41 auUGGU---UACACGUC-UGAUGACa |||| ||| | | ||||||| ccACCAGGCAUGAACUGCACUACUGa 2 21 293 318 [mm9:13:18958362-18958387:+] 0.5596 150 7 -16.85 -0.3719 MIMAT0000240 mmu-miR-207 218035 Vps41 cucccuccucucgguCCUCUUCg ||||||| cuccuugucaccgauGGAGAAGu 2 9 152 174 [mm9:13:18958221-18958243:+] 0.5247 140 7 -15.66 -0.3294 MIMAT0000569 mmu-miR-330* 218035 Vps41 agAGAC-GUCCGGGACACGA-AACg | || || || ||||| ||| gcUGUGUCAACGCCAGUGCUGUUGa 2 22 59 83 [mm9:13:18958128-18958152:+] 0.5315 120 0 -18.14 -0.1964 MIMAT0004667 mmu-miR-199b 218035 Vps41 auUGGU---UACACGUC-UGAUGACa |||| ||| | | ||||||| ccACCAGGCAUGAACUGCACUACUGa 2 21 293 318 [mm9:13:18958362-18958387:+] 0.5596 150 7 -16.85 -0.3719 MIMAT0004670 mmu-miR-7a* 218035 Vps41 auaccGUC-UGA--CACUAAACAAc ||| |:| ||||||||| cuaauCAGUAUUUCAUGAUUUGUUu 2 18 209 233 [mm9:13:18958278-18958302:+] 0.5596 151 7 -11.97 -0.8745 MIMAT0004670 mmu-miR-7a* 218035 Vps41 auaccgucugacacUAAACAAc ||||||| aucaggucaucaauAUUUGUUg 2 9 559 580 [mm9:13:18958628-18958649:+] 0.5966 140 7 -11.37 -1.0210 MIMAT0002109 mmu-miR-468 218035 Vps41 guCUGUGUGC-GUGUAGU-CAGUAu | :|: :| | ||||| ||||| caGUUAUCUGCCCCAUCAGGUCAUc 2 22 545 569 [mm9:13:18958614-18958638:+] 0.5966 124 0 -18.34 -0.8400 MIMAT0003373 mmu-miR-302b* 218035 Vps41 ucuuucguaaggguacAAUUUCa |||||| gagguaaaaauuaaaaUUAAAGg 2 8 425 447 [mm9:13:18958494-18958516:+] 0.5966 120 6 -5.56 -0.2306 MIMAT0003375 mmu-miR-302c* 218035 Vps41 cgUCCA--UUGGGGUACAAUUUCg |||| || :: | |||||| agAGGUAAAAAUUAAAAUUAAAGg 2 21 424 447 [mm9:13:18958493-18958516:+] 0.5966 123 6 -11.67 -0.2348 MIMAT0003732 mmu-miR-668 218035 Vps41 ccaucacccggcuCGGCUCACUGu |::||||||| caacgccagugcuGUUGAGUGACg 2 12 66 89 [mm9:13:18958135-18958158:+] 0.5809 147 7 -21.79 -0.3660 MIMAT0003732 mmu-miR-668 218035 Vps41 ccaucacccggcucGGCUCACUGu |:||||||| uuugccacucuccaCUGAGUGACu 2 11 21 44 [mm9:13:18958090-18958113:+] 0.4533 146 7 -16.73 -0.1601 MIMAT0014815 mmu-miR-3099* 218035 Vps41 guucccgaccuucCUUCGACc ||||||| gaccuuccuuccaGAAGCUGc 2 9 132 152 [mm9:13:18958201-18958221:+] 0.5247 140 7 -9.71 -0.3433 MIMAT0003739 mmu-miR-673-5p 218035 Vps41 gaGGUUCCUGGUCUCGAC-ACUc :||| | |||| |||| ||| ugUCAACG-CCAGUGCUGUUGAg 2 21 63 84 [mm9:13:18958132-18958153:+] 0.5809 130 0 -22.45 -0.1540 MIMAT0004825 mmu-miR-423-5p 218035 Vps41 uuUCAGAG-CGAGAGACGGGG-AGu || ||| |:| |||||||| || cuAG-CUCAGUUAUCUGCCCCAUCa 2 22 539 562 [mm9:13:18958608-18958631:+] 0.5966 134 0 -27.45 -0.7171 MIMAT0003469 mmu-miR-690 218035 Vps41 aaACCAACACUCGGAUCGGAAa ||| || | : ||||||| gcUGG-GGU-ACUAUAGCCUUa 2 21 498 517 [mm9:13:18958567-18958586:+] 0.5966 144 7 -13.18 -0.9255 MIMAT0003495 mmu-miR-705 218035 Vps41 acgGGUGGGGUGGA-GGGUGg || ||::||| ||||| --gCCUGCCUGCCUGCCCACc 2 18 1 19 [mm9:13:18958070-18958088:+] 0.5678 125 0 -28.22 -0.4496 MIMAT0003495 mmu-miR-705 218035 Vps41 acGGGUGGG--GUG--GAG-GGUGg ||||||| ::| ||| |||| ugCCCACCCUUUGCCACUCUCCACu 2 19 12 36 [mm9:13:18958081-18958105:+] 0.5678 120 0 -32.22 -0.1635 MIMAT0004237 mmu-miR-742 218035 Vps41 aaaugggucguaccACCGAAag |||||| augauuuguuuauuUGGCUUau 3 9 223 244 [mm9:13:18958292-18958313:+] 0.5596 120 0 -8.00 -0.1588 MIMAT0004884 mmu-miR-466h 218035 Vps41 auGUGUGUUCGUGUACGUG-UGu || :|| | || ||||| || acCAGGCAUGAAC-UGCACUACu 2 21 295 316 [mm9:13:18958364-18958385:+] 0.5596 122 0 -15.04 -0.3035 MIMAT0004888 mmu-miR-493 218035 Vps41 ggaccgugugucaucCUGGAAGu ||||||| caguuguuuucuccaGACCUUCc 2 9 117 139 [mm9:13:18958186-18958208:+] 0.5105 140 7 -12.74 -0.4096 MIMAT0004940 mmu-miR-511 218035 Vps41 acucacGUCUCGUUUUCCGUa :| | : |||||:| aaaaauUAAAAUUAAAGGUAa 2 16 430 450 [mm9:13:18958499-18958519:+] 0.5966 127 0 -5.90 -0.1217 MIMAT0005831 mmu-miR-669k 218035 Vps41 aacGUAC-GCAC-AUAU-ACGUAu |||| | || ||| ||||| uccCAUGCCAUGAAAUAUUGCAUu 2 19 184 207 [mm9:13:18958253-18958276:+] 0.5596 120 0 -11.01 -0.6558 MIMAT0005847 mmu-miR-1190 218035 Vps41 cugucuccccuuGGAGUCGACu | ||||||| uacacuguuuguCAUCAGCUGu 2 11 379 400 [mm9:13:18958448-18958469:+] 0.5781 142 7 -13.51 -0.6974 MIMAT0005848 mmu-miR-466j 218035 Vps41 aauGUGUGUACGUGUACGUG-UGu || :|||| || ||||| || cacCAGGCAUGAAC-UGCACUACu 2 21 294 316 [mm9:13:18958363-18958385:+] 0.5596 130 0 -17.48 -0.2984 MIMAT0009390 mmu-miR-1927 218035 Vps41 agUCAG-GGAUU----GUAGGUCUCCAg || | ||||| |||::|||||| guAGCCUCCUAAAGCGCAUUUAGAGGUa 2 22 403 430 [mm9:13:18958472-18958499:+] 0.5966 147 6 -24.47 -0.2472 MIMAT0009400 mmu-miR-1936 218035 Vps41 cggucaagugucgucCAGUCAAu ||||||| uccucggagcuccccGUCAGUUg 2 9 100 122 [mm9:13:18958169-18958191:+] 0.5105 140 7 -18.57 -0.1028 MIMAT0009424 mmu-miR-1953 218035 Vps41 guCUUCGGACUCUUGA-AAGGGu ||||:| || |:|| ||||| gaGAAGUC-GA-AGCUCUUCCCa 2 21 168 188 [mm9:13:18958237-18958257:+] 0.5422 128 0 -23.35 -0.5608 MIMAT0009437 mmu-miR-1964 218035 Vps41 uuucggccucgggUCUUCAGCc |||||||| uugucaccgauggAGAAGUCGa 2 10 156 177 [mm9:13:18958225-18958246:+] 0.5247 145 7 -18.41 -0.7044 MIMAT0011212 mmu-miR-2136 218035 Vps41 guGUAGAGUCAGUUGUGGGUc :| | :|||: ||||||| uaUACCCUAGUU-ACACCCAc 2 20 277 296 [mm9:13:18958346-18958365:+] 0.5596 153 7 -17.29 -0.5043 MIMAT0011222 mmu-miR-2146 218035 Vps41 guguaccuugGGAAGAGGUg ::||||||| ccgucaguugUUUUCUCCAg 2 11 113 132 [mm9:13:18958182-18958201:+] 0.5105 142 7 -11.81 -0.2991 MIMAT0012774 mmu-miR-664 218035 Vps41 auccgaccccucAUUUACUUAu |:||||||| aucaauauuuguUGAAUGAAUa 2 11 567 588 [mm9:13:18958636-18958657:+] 0.5966 146 7 -8.11 -0.8333 MIMAT0015640 mmu-miR-3470a 218035 Vps41 ggucggaccagAUGUUUCACu | ||||||| uagcaaaagagUUCAAAGUGa 2 11 250 270 [mm9:13:18958319-18958339:+] 0.5596 142 7 -14.41 -1.1052 MIMAT0015643 mmu-miR-3472 218035 Vps41 ccAAGGA--AGGUCGA-AGACCG-AUAAu ||| | |::: :| |:|||| |||| auUUCAUGAUUUGUUUAUUUGGCUUAUUu 2 24 218 246 [mm9:13:18958287-18958315:+] 0.5596 121 0 -10.82 -0.9712 MIMAT0000124 mmu-miR-15b 218035 Vps41 acauuuGGU-ACUACAC-GACGAu ||| ||| ||| ||||| cacucuCCACUGA-GUGACUGCUg 2 17 26 48 [mm9:13:18958095-18958117:+] 0.4677 121 0 -18.65 -0.1099 MIMAT0000209 mmu-miR-129-5p 218035 Vps41 cguucGGGUCUGGCGUUUUUc :::|| : ||||||: gcuuaUUUAGUUAGCAAAAGa 2 17 239 259 [mm9:13:18958308-18958328:+] 0.5596 132 0 -10.69 -0.1053 MIMAT0000210 mmu-miR-181a 218035 Vps41 ugAGUGGCUGU-CGCAACUUACaa |||:| |:| :|||||||| ggUCAUCAAUAUUUGUUGAAUGaa 3 22 563 586 [mm9:13:18958632-18958655:+] 0.5966 148 0 -17.78 -0.1298 MIMAT0000233 mmu-miR-200b 218035 Vps41 aguaGUAAUGGUCCGUCAUAAu ||||:|:| ||||||| auugCAUUGCUAAUCAGUAUUu 2 19 200 221 [mm9:13:18958269-18958290:+] 0.5596 166 7 -17.85 -1.0055 MIMAT0000246 mmu-miR-122 218035 Vps41 guuugugguaacAGUGUGAGGu | ||||||| aaugcugagaacUGACACUCCu 2 11 451 472 [mm9:13:18958520-18958541:+] 0.5966 142 7 -12.38 -0.6174 MIMAT0000381 mmu-miR-34c 218035 Vps41 cguuagucGAUUGAUGUGACGGa ||:| |||||||| cugcacuaCUGAGAACACUGCCa 2 16 307 329 [mm9:13:18958376-18958398:+] 0.5596 155 7 -18.85 -0.7913 MIMAT0000382 mmu-miR-34b-5p 218035 Vps41 uguuagucGAUUAAUGUGACGGa ||:| |||||||| cugcacuaCUGAGAACACUGCCa 2 16 307 329 [mm9:13:18958376-18958398:+] 0.5596 155 7 -18.92 -0.7913 MIMAT0000526 mmu-miR-15a 218035 Vps41 guguuuGGUAAUACAC-GACGAu ||| |: ||| ||||| cacucuCCACUGAGUGACUGCUg 2 17 26 48 [mm9:13:18958095-18958117:+] 0.4677 124 0 -19.23 -0.1088 MIMAT0000542 mmu-miR-34a 218035 Vps41 uguUGGUCGAUUC-UGUGACGGu ||:| ||:|| |||||||| ugcACUA-CUGAGAACACUGCCa 2 20 308 329 [mm9:13:18958377-18958398:+] 0.5596 164 7 -26.22 -0.7913 MIMAT0000546 mmu-miR-103 218035 Vps41 aguaucgggaCAUGUUACGACga ||| ||||||| aaaauuaaagGUAAAAUGCUGag 3 14 437 459 [mm9:13:18958506-18958528:+] 0.5966 137 0 -12.23 -0.1164 MIMAT0000582 mmu-miR-338-3p 218035 Vps41 guuGUUUUAGUGAC-----UACGACcu :|||||:| | |||||| aauUAAAAUUAAAGGUAAAAUGCUGag 3 20 433 459 [mm9:13:18958502-18958528:+] 0.5966 126 0 -11.30 -0.1141 MIMAT0000647 mmu-miR-107 218035 Vps41 acuaucgggaCAUGUUACGACga ||| ||||||| aaaauuaaagGUAAAAUGCUGag 3 14 437 459 [mm9:13:18958506-18958528:+] 0.5966 137 0 -12.23 -0.1164 MIMAT0000657 mmu-miR-200c 218035 Vps41 agguaGUAAUGGGCCGUCAUAAu ||||:|: ||||||| uauugCAUUGCUAAUCAGUAUUu 2 19 199 221 [mm9:13:18958268-18958290:+] 0.5596 158 7 -16.26 -1.0055 MIMAT0000665 mmu-miR-223 218035 Vps41 accccauaaACUGUUUGACUGu ||| :||||||| guaaaaugcUGA-GAACUGACa 2 14 447 467 [mm9:13:18958516-18958536:+] 0.5966 147 7 -13.44 -0.8422 MIMAT0000671 mmu-miR-224 218035 Vps41 uugcCUUGGUGAUCACUGAAu ||::: |||||||| aaaaGAGUUCAAAGUGACUUc 2 18 254 274 [mm9:13:18958323-18958343:+] 0.5596 149 7 -13.57 -0.7756 MIMAT0000673 mmu-miR-181b 218035 Vps41 ugGGUGGCUGU-CGUUACUUACaa :||:| |:| :: |||||| ggUCAUCAAUAUUUGUUGAAUGaa 3 22 563 586 [mm9:13:18958632-18958655:+] 0.5966 132 0 -12.04 -0.1298 MIMAT0000674 mmu-miR-181c 218035 Vps41 ugAGUGGCUGU--CCAACUUACaa |||:| |:| |||||||| ggUCAUCAAUAUUUGUUGAAUGaa 3 21 563 586 [mm9:13:18958632-18958655:+] 0.5966 143 0 -15.38 -0.1336 MIMAT0001420 mmu-miR-433 218035 Vps41 uguggcuccucggguAGUACUa |||||| uugcuaaucaguauuUCAUGAu 2 8 206 227 [mm9:13:18958275-18958296:+] 0.5596 120 6 -10.36 -0.1288 MIMAT0001537 mmu-miR-429 218035 Vps41 ugcCGUAAUGGUCUGUCAUAAu |||||:|:| ||||||| auuGCAUUGCUAAUCAGUAUUu 2 20 200 221 [mm9:13:18958269-18958290:+] 0.5596 171 7 -20.13 -1.0055 MIMAT0001542 mmu-miR-449a 218035 Vps41 ugGUCGAUUG-UUAUGUGACGGu || ||| : |: |||||||| ugCA-CUACUGAGAACACUGCCa 2 21 308 329 [mm9:13:18958377-18958398:+] 0.5596 153 7 -21.15 -0.7877 MIMAT0003889 mmu-miR-758 218035 Vps41 aucaccUGGUCCAGU-GUUu |:||||||| ||| ugccccAUCAGGUCAUCAAu 2 14 553 572 [mm9:13:18958622-18958641:+] 0.5966 125 0 -15.51 -0.7222 MIMAT0003450 mmu-miR-488 218035 Vps41 cuGGUUCUUUGUC--GGAA-AGUu :| ||||:| | |||| ||| cuUCCAGAAGCUGCUCCUUGUCAc 2 20 139 162 [mm9:13:18958208-18958231:+] 0.5247 122 0 -13.62 -0.1296 MIMAT0003453 mmu-miR-497 218035 Vps41 auguuuGGUGUCACAC-GACGAc |||| | ||| ||||| cacucuCCACUGAGUGACUGCUg 2 17 26 48 [mm9:13:18958095-18958117:+] 0.4677 128 0 -22.98 -0.1078 MIMAT0003456 mmu-miR-495 218035 Vps41 uucUUCACGUGG-UACAAACAAa |:|| ||:| || |||||| aucAGGU-CAUCAAUAUUUGUUg 2 20 559 580 [mm9:13:18958628-18958649:+] 0.5966 132 6 -10.88 -0.1171 MIMAT0003456 mmu-miR-495 218035 Vps41 uucuUCACGUGGUAC-AAACAAa ||| : :|||| |||||| aaucAGUAUUUCAUGAUUUGUUu 2 19 211 233 [mm9:13:18958280-18958302:+] 0.5596 130 6 -13.13 -0.9237 MIMAT0003460 mmu-miR-449c 218035 Vps41 ggucGAUCG-UUACGUGACGGa ||| : |: ||||||| ugcaCUACUGAGAACACUGCCa 2 18 308 329 [mm9:13:18958377-18958398:+] 0.5596 144 7 -15.70 -0.7913 MIMAT0004324 mmu-miR-181d 218035 Vps41 ugGGUGGCUGU-UGUUACUUACaa :||:| |:| :: |||||| ggUCAUCAAUAUUUGUUGAAUGaa 3 22 563 586 [mm9:13:18958632-18958655:+] 0.5966 132 0 -12.65 -0.1298 MIMAT0004869 mmu-miR-421 218035 Vps41 cgcggguUAAUUACAGACAACUa || ||| |:|||||| ucaggucAUCAAUAUUUGUUGAa 2 17 560 582 [mm9:13:18958629-18958651:+] 0.5966 148 6 -12.14 -0.1685 MIMAT0004869 mmu-miR-421 218035 Vps41 cgcggguuaaUUACAGACAACUa |:|| ||||||| ugucaacgccAGUG-CUGUUGAg 2 14 63 84 [mm9:13:18958132-18958153:+] 0.5809 147 7 -18.97 -0.1091 MIMAT0004889 mmu-miR-504 218035 Vps41 cuAUCUCAC-GU-CUGGUCCC-AGa | ||||| |: | :||||| || ugUUGAGUGACGUGUUCAGGGCUCc 2 21 78 102 [mm9:13:18958147-18958171:+] 0.5386 122 0 -20.17 -0.1152 MIMAT0004896 mmu-miR-590-3p 218035 Vps41 ugaUCGAAUAUGUAUUUUAAu || | | | ||||||| uagAGGUAAAAAUUAAAAUUa 2 19 423 443 [mm9:13:18958492-18958512:+] 0.5966 150 7 -5.84 -1.2713 MIMAT0005447 mmu-miR-449b 218035 Vps41 cggucGAUUGUUGUGACGGa ||:| ||||||||| cacuaCUGAGAACACUGCCa 2 16 310 329 [mm9:13:18958379-18958398:+] 0.5596 163 7 -23.18 -0.7913 MIMAT0004937 mmu-miR-875-5p 218035 Vps41 guGGACUAUUUUG-----A-CUCCAUau ||| ||||:| | |||||| agCCUCCUAAAGCGCAUUUAGAGGUAaa 3 21 405 432 [mm9:13:18958474-18958501:+] 0.5966 126 0 -14.83 -0.2055 MIMAT0005850 mmu-miR-1192 218035 Vps41 uuaaaccagacaaacAAACAAa |||||| aucaggucaucaauaUUUGUUg 2 8 559 580 [mm9:13:18958628-18958649:+] 0.5966 120 6 -8.18 -0.1148

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G040544 Vps41 Mus musculus 218035

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Vps41 mmu-miR-223 beg:453 end:468 pic:3' ACCCCATAAACTGTTTGACTGT 5'& ||| .|||||||| &5' ---------TGA-GAACTGACA 3' Vps41 mmu-miR-2136 beg:281 end:296 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& .|||. ||||||| &5' -------TAGTT-ACACCCA- 3' Vps41 mmu-miR-199a-3p beg:305 end:318 pic:3' ATTGGTTACACGTCTGATGACA 5'& ||| ||||||| &5' ---------TGC--ACTACTG- 3' Vps41 mmu-miR-199b beg:305 end:318 pic:3' ATTGGTTACACGTCTGATGACA 5'& ||| ||||||| &5' ---------TGC--ACTACTG- 3' Vps41 mghv-miR-M1-4 beg:91 end:107 pic:3' ATCTTATTGTGCACGAGGAGCT 5'& || | ||||||||. &5' --------CAGG-GCTCCTCGG 3' Vps41 mmu-miR-151-5p beg:93 end:107 pic:3' TGATCTGACACTCGAGGAGCT 5'& |.||||||||. &5' ----------GGGCTCCTCGG 3' Vps41 mmu-miR-421 beg:66 end:84 pic:3' CGCGGGTTAATTACAGACAACTA 5'& |||| |.|| ||||||| &5' -CGCC-----AGTG-CTGTTGA- 3' Vps41 mmu-miR-3099star beg:142 end:152 pic:3' GTTCCCGACCTTCCTTCGACC 5'& ||||||| &5' -------------GAAGCTG- 3' Vps41 mmu-miR-668 beg:71 end:89 pic:3' CCATCACCCGGCTCGGCTCACTGT 5'& ||| ||. |..||||||| &5' ---AGT--GCT--GTTGAGTGAC- 3' Vps41 mcmv-miR-m59-1 beg:33 end:49 pic:3' GACTGCCAGCTCCGTGACGATT 5'& .||| ||||||.. &5' --------TGAGTGACTGCTGG 3' Vps41 mmu-miR-101astar beg:26 end:46 pic:3' CGTAGTCGTGACACTATTGACT 5'& || ||||| .|.|||| &5' ---TCTCCACTGA-GTGACTG- 3' Vps41 mmu-miR-122 beg:449 end:472 pic:3' GTTTGTGGTAAC--AGTGTGAGGT 5'& |||..|. | ||||||| &5' -AAATGCTGAGAACTGACACTCC- 3' Vps41 mmu-miR-124star beg:564 end:589 pic:3' TAGTTCCAGGCGAC--ACTTGTGC 5'& ||||| |..|.|| ||||.| &5' ATCAATATTTGTTGAATGAATA-- 3' Vps41 mmu-miR-125b-3p beg:94 end:117 pic:3' TCGAGGGTTCTCGGATTGGGCA 5'& .|||||. .||||. ||||| &5' GGCTCCTCGGAGCTC--CCCGT 3' Vps41 mmu-miR-125b-5p beg:79 end:98 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& .||| .|||||| &5' ----GAGTGACGTGTTCAGGG- 3' Vps41 mmu-miR-130a beg:188 end:209 pic:3' TACGGGAAAATTGTAACGTGAC 5'& |||| ||.||||||.|| &5' -TGCCATGA-AATATTGCATTG 3' Vps41 mmu-miR-130b beg:186 end:209 pic:3' TACGGGAAAGTAGTAACGTGAC 5'& ||||| .||||||.|| &5' ATGCCATGAAA-TATTGCATTG 3' Vps41 mmu-miR-136 beg:151 end:171 pic:3' GGTAGTAGTTTTGTTTACCTCA 5'& || | || || .|||||| &5' CC-TTGTC---ACCGATGGAG- 3' Vps41 mmu-miR-138 beg:380 end:399 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& ||| || . ||.||||| &5' ----CTG-TTTGT--CATCAGCT 3' Vps41 mmu-miR-142-3p beg:314 end:328 pic:3' AGGTATTTCATCCTTTGTGATGT 5'& | ||||||.| &5' -----------GAGAACACTGC- 3' Vps41 mmu-miR-150star beg:504 end:529 pic:3' GATAG-GGGGTCCGGAC-ATGGTC 5'& |||| ||..| |..|| |||| &5' CTATAGCCTTATGTTTGCTACC-- 3' Vps41 mmu-miR-154 beg:391 end:410 pic:3' GCTTCCGTTGTG-CCTATTGGAT 5'& ||.| ||.||.||| &5' ------CAGCTGTGGGTAGCCT- 3' Vps41 mmu-miR-15a beg:63 end:82 pic:3' GTGTT-TGGTAATACACGACGAT 5'& ||| .||| ||||||.|. &5' --CAACGCCA----GTGCTGTTG 3' Vps41 mmu-miR-15bstar beg:211 end:231 pic:3' ATCTCGTCGTTTATTACTAAGC 5'& |||.| | ||||||.| &5' -----CAGTATTTCATGATTTG 3' Vps41 mmu-miR-16 beg:66 end:82 pic:3' GCGGTTATAAATGCACGACGAT 5'& ||||| ||||||.|. &5' CGCCA--------GTGCTGTTG 3' Vps41 mmu-miR-183 beg:59 end:79 pic:3' TCACTTAAGATGGTCACGGTAT 5'& ||| .|||||||..| &5' -GTGTCAAC-GCCAGTGCTGT- 3' Vps41 mmu-miR-188-3p beg:467 end:489 pic:3' ACGTTTGGG----AC-GTACACCCTC 5'& ||. || ||||||||| &5' ------CCTTCAGTGACATGTGGGA- 3' Vps41 mmu-miR-1897-5p beg:124 end:147 pic:3' GGGGGAGAAAGAGGTAGGTTTC 5'& |.|| .||| ||||.| &5' -CTCCAGACCTTCCTTCCAGA- 3' Vps41 mmu-miR-192 beg:555 end:568 pic:3' CCGACAGTTAAGTA-TCCAGTC 5'& ||| |||||| &5' -----------CATCAGGTCA- 3' Vps41 mmu-miR-1927 beg:401 end:430 pic:3' AGTCAG-GGAT----TGTAGGTCTCCAG 5'& .|| | |||| .|||..|||||| &5' -TAGCCTCCTAAAGCGCATTTAGAGGT- 3' Vps41 mmu-miR-1936 beg:100 end:123 pic:3' CGGTCAAGTGTCGTC---CAGTCAAT 5'& ||. ||| |||||||. &5' ------TCGGAGCTCCCCGTCAGTTG 3' Vps41 mmu-miR-1937a beg:495 end:506 pic:3' ACCCCCGAGCAGGCCCTAA 5'& | |.|||.| &5' ---------G-CTGGGGT- 3' Vps41 mmu-miR-1940 beg:124 end:145 pic:3' TTGACGAGG--TGGAAGAGTCAGGAGGTA 5'& |||| |||||| |.|||| &5' -----CTCCAGACCTTC-----CTTCCA- 3' Vps41 mmu-miR-1957 beg:512 end:538 pic:3' CAGTAT--ACGA--GATG-GTGAC 5'& |.||. |||| |||| |.||| &5' -TTATGTTTGCTACCTACGCGCTG 3' Vps41 mmu-miR-196a beg:508 end:531 pic:3' GGGTTGTTGTACTT-TGATGGAT 5'& .|.| .||| .||||||| &5' --TAGCCTTATGTTTGCTACCTA 3' Vps41 mmu-miR-196b beg:510 end:531 pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& || .||||||| &5' -CCTTATGTTT---GCTACCTA 3' Vps41 mmu-miR-1970 beg:466 end:483 pic:3' GTTTCGGATAGG-GGTCACTGTGT 5'& ||| .||||||||. &5' ---------TCCTTCAGTGACAT- 3' Vps41 mmu-miR-199a-3p beg:30 end:49 pic:3' ATTGGTTACACGTCTGATGACA 5'& ||| || |. ||||.||| &5' ---CCACTGAGT-GACTGCTG- 3' Vps41 mmu-miR-200b beg:201 end:221 pic:3' AGTAGTAATGGTCCGTCATAAT 5'& ||||.|.| ||||||| &5' ----CATTGCTAATCAGTATT- 3' Vps41 mmu-miR-200c beg:201 end:221 pic:3' AGGTAGTAATGGGCCGTCATAAT 5'& ||||.|. ||||||| &5' -----CATTGCTAATCAGTATT- 3' Vps41 mmu-miR-201 beg:20 end:42 pic:3' TTCTTGTTACGGAA-----TGACTCAT 5'& |||| |||||||. &5' --------TGCCACTCTCCACTGAGTG 3' Vps41 mmu-miR-2140 beg:290 end:314 pic:3' TGGTGGTTC-TA---GACGTGGA 5'& ||||||.| || ||||||. &5' -CCACCAGGCATGAACTGCACT- 3' Vps41 mmu-miR-2146 beg:120 end:132 pic:3' GTGTACCTTGGGAAGAGGTG 5'& ..||||||| &5' ----------TTTTCTCCA- 3' Vps41 mmu-miR-21star beg:67 end:83 pic:3' CTGTCGGGTAGCTGACGACAAC 5'& ||| | |||||||| &5' ----GCC-----AGTGCTGTTG 3' Vps41 mmu-miR-28 beg:83 end:104 pic:3' GAGTTATCTG-ACA---CTCGAGGAA 5'& ||| ||| |.|||||| &5' -------GACGTGTTCAGGGCTCCT- 3' Vps41 mmu-miR-2861 beg:0 end:17 pic:3' GGCGGGCGG-CGGTCCGGGG 5'& |||.||| ||| |||| &5' --GCCTGCCTGCCT-GCCC- 3' Vps41 mmu-miR-30astar beg:304 end:321 pic:3' CGACGTTTGTAGGCTGACTTTC 5'& ||||| |. |||||.| &5' -CTGCA-----CT-ACTGAGA- 3' Vps41 mmu-miR-30estar beg:444 end:461 pic:3' CGACATTTGTAGGCTGACTTTC 5'& ||||| .| ||||.| &5' ---GTAAAA---TG-CTGAGA- 3' Vps41 mmu-miR-30estar beg:300 end:321 pic:3' CGACATTTGTAG-GCTGACTTTC 5'& |.||| | |||||.| &5' ----TGAACTGCACTACTGAGA- 3' Vps41 mmu-miR-338-3p beg:30 end:51 pic:3' GTTGTTTTAGTGACT-----ACGACCT 5'& |||||| ||||||| &5' ---------CACTGAGTGACTGCTGGA 3' Vps41 mmu-miR-3470a beg:249 end:271 pic:3' GGTCGGACCAGAT-GTTTCACT 5'& .||| |||||||| &5' -TAGCAAAAGAGTTCAAAGTGA 3' Vps41 mmu-miR-3470a beg:366 end:387 pic:3' GGT-CGGACCAGATGTTTCACT 5'& || |||||| ||||| || &5' -CATGCCTGG-CTACACTGT-- 3' Vps41 mmu-miR-3473 beg:17 end:35 pic:3' CCGACTCGGTAGAGAGGT 5'& || |||| ||||||| &5' --CTTTGCCA-CTCTCCA 3' Vps41 mmu-miR-34a beg:308 end:330 pic:3' TGTTGGTCGATTC-TGTGACGGT 5'& .| ||.| ||.|| ||||||||| &5' GC-ACTA-CTGAGAACACTGCCA 3' Vps41 mmu-miR-34b-5p beg:309 end:329 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& | ||.| |||||||| &5' -----CTACTGAGAACACTGCC- 3' Vps41 mmu-miR-34c beg:309 end:329 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& | ||.| |||||||| &5' -----CTACTGAGAACACTGCC- 3' Vps41 mmu-miR-34c beg:365 end:389 pic:3' CGTTAGTC-GATTGATGTGACGGA 5'& ||| | ||..||||||||..| &5' GCAT---GCCTGGCTACACTGTTT 3' Vps41 mmu-miR-384-5p beg:509 end:525 pic:3' TGTAACGGATCCTTAACAAATGT 5'& |||| |||||.| &5' -----GCCTTA----TGTTTGC- 3' Vps41 mmu-miR-429 beg:200 end:221 pic:3' TGCCGTAATGGTCTGTCATAAT 5'& |||||.|.| ||||||| &5' ---GCATTGCTAATCAGTATT- 3' Vps41 mmu-miR-449a beg:308 end:330 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||.| ||.| | ||||||||| &5' ACTA-CTGAGA--ACACTGCCA 3' Vps41 mmu-miR-449b beg:369 end:389 pic:3' CGG-TCGATTGTTGTGACGGA 5'& ||| .||| ||||||..| &5' GCCTGGCT----ACACTGTTT 3' Vps41 mmu-miR-449b beg:306 end:329 pic:3' CG-GTCGATTGTTGTGACGGA 5'& || | ||.| ||||||||| &5' GCACTACTGAGAACACTGCC- 3' Vps41 mmu-miR-449c beg:324 end:343 pic:3' GGTCGATCGTTACGTGACGGA 5'& ||||||| ||.| | ||| &5' CCAGCTA-CAGT-CG--GCC- 3' Vps41 mmu-miR-453 beg:390 end:410 pic:3' ACGTTCGAGT-GATACTCCGTTGGA 5'& ||| ||.|| ||.|.||| &5' -------TCAGCTGTG-GGTAGCCT 3' Vps41 mmu-miR-470star beg:334 end:358 pic:3' AGAAGAGTC---TTTCC--ATGACCAA 5'& ||.| |||| |.||||| &5' -----TCGGCCAAAAGTTCTGCTGGT- 3' Vps41 mmu-miR-497 beg:63 end:83 pic:3' ATGTT-TGGTGTCACACGACGAC 5'& ||| .||| ||||||.|| &5' --CAACGCCA----GTGCTGTTG 3' Vps41 mmu-miR-509-5p beg:487 end:507 pic:3' TACTAAC-GGTGTAAGACCTCAT 5'& | |||. ||||.||| &5' ------GACCATTAGCTGGGGTA 3' Vps41 mmu-miR-511 beg:412 end:431 pic:3' ACTCACGTCTCGT---TTTCCGTA 5'& || ||| |.|||.| &5' -------AGCGCATTTAGAGGTA- 3' Vps41 mmu-miR-654-3p beg:291 end:305 pic:3' TTCCACTACCAGTCGTCTGTAT 5'& || |||.|||. &5' -----------CACCAGGCATG 3' Vps41 mmu-miR-668 beg:21 end:44 pic:3' CCATCACCCGGCTC-----GGCTCACTGT 5'& ||| |.||||||| &5' --------GCCACTCTCCACTGAGTGAC- 3' Vps41 mmu-miR-684 beg:474 end:493 pic:3' AACTGAACTTCCCTTTTGA 5'& |||| || |||||.|| &5' -TGACATGT-GGGAAGAC- 3' Vps41 mmu-miR-690 beg:497 end:517 pic:3' AAACCAACACTCGG---ATCGGAAA 5'& || |.|. ||||||| &5' ------TG-GGGTACTATAGCCTT- 3' Vps41 mmu-miR-693-3p beg:132 end:153 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& | || || .||||||| &5' ---CTTCCT--TCCAGAAGCTGC 3' Vps41 mmu-miR-744star beg:344 end:363 pic:3' TCCAACTCCAAT-C-ACCGTTGTC 5'& ||| | |||.||||| &5' --------GTTCTGCTGGTAACAG 3' Vps41 mmu-miR-877 beg:15 end:38 pic:3' GGGACGCGGT-AGAGGAGATG 5'& |||| .|||| ||||| ||. &5' CCCTTTGCCACTCTCCACTG- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Vps41 mmu-let-7a 497 531 -UGAU------AUGUUGGA-------UGAUGGAGU :||: ||:|:||| :|||||| AGCUGGGGUACUAUAGCCUUAUGUUUGCUACCUA- Vps41 mmu-let-7b 489 531 -UUGGUG-------------UGUUGGA-------UGAUGGAGU :||||: |:|:||| :|||||| AGACCAUUAGCUGGGGUACUAUAGCCUUAUGUUUGCUACCUA- Vps41 mmu-let-7c 489 531 -UUGGU-------------AUGUUGGA-------UGAUGGAGU :|||| ||:|:||| :|||||| AGACCAUUAGCUGGGGUACUAUAGCCUUAUGUUUGCUACCUA- Vps41 mmu-let-7d 505 531 -UGAUACGUUGGA-------UGAUGGAGA ||||| |:||| :|||||| UACUAU--AGCCUUAUGUUUGCUACCUA- Vps41 mmu-let-7f 522 548 -UGAU--AUGUUAGA-UGAUGGAGU- :||| |||: || |||| |||| UGCUACCUACGCGCUGACUAGCUCAG Vps41 mmu-miR-101a 56 82 GAAGUCA--AUAGU----GUCAUGACAU ||| |:||| ||||:|||| --GCAGCUGUGUCAACGCCAGUGCUGUU Vps41 mmu-miR-101b 56 82 GAAGUCGA--UAGU----GUCAUGACAU ||||| :||| ||||:|||| --GCAGCUGUGUCAACGCCAGUGCUGUU Vps41 mmu-miR-103 51 83 AGUAUCGG-GACAU-------GUUACGACGA- || ||| ||||: ||:|||||:| CCACAGCAGCUGUGUCAACGCCAGUGCUGUUG Vps41 mmu-miR-107 57 83 ACUAUCGGGACAU-----GUUACGACGA- |||: ||| ||:|||||:| ---CAGCUGUGUCAACGCCAGUGCUGUUG Vps41 mmu-miR-122a 15 36 UGUUUGUGGU-AACAGUGUGAGGU- |||| ||| ||| ||||| ----CCACCCUUUGCCACUCUCCAC Vps41 mmu-miR-125a 86 109 GUGUCCAAUUUCCCAGAGUC-CCU- ||: ||| |||| ||| ||| GACGUGUUC-AGGG-CUCCUCGGAG Vps41 mmu-miR-125b 86 109 AGUGUUCAA-UCCCAGAGUC-CCU- ||: ||| |||| ||| ||| -GACGUGUUCAGGG-CUCCUCGGAG Vps41 mmu-miR-128a 47 66 UUUUCUCUGGCCAAG-UGACACU :|||| :||||| ----UGGACCACAGCAGCUGUGU Vps41 mmu-miR-129-3p 73 102 -UACGAAAA---ACCCCAU---UCCCGAA :|||| || ||: |||||| AGUGCUGUUGAGUGACGUGUUCAGGGCUC Vps41 mmu-miR-130a 187 210 -UACGGGAAAAUUGUAACGUGAC- ||||| ||:||||||:|| CAUGCCAUGA-AAUAUUGCAUUGC Vps41 mmu-miR-132 48 84 GCUGGUAC---CGACA---------UC-UGACAAU- ||||| ||||| || :|||||: GGACCACAGCAGCUGUGUCAACGCCAGUGCUGUUGA Vps41 mmu-miR-140 479 498 GAUGGUAU-CCCAUUUUGGUGAC |||: ||| ||:||||:| ---ACAUGUGGG-AAGACCAUUA Vps41 mmu-miR-140* 481 508 AGGCACCAAGAUGG-----GACACCAU- :|||| ||| ||| |||| -AUGUGGGAAGACCAUUAGCUGGGGUAC Vps41 mmu-miR-145 474 505 UUCCCUAAGGACCCUU-------UUGACCUG || || : |||||| |:||||: CAGUGACAUGUGGGAAGACCAUUAGCUGGGG Vps41 mmu-miR-148a 343 370 UGUUUCAAGAC-AUCA----CGUGACU- ||||||||| |:|| |: |||: -AAAAGUUCUGCUGGUAACAGUUCUGGC Vps41 mmu-miR-148b 360 379 UGUUUCAAGACAC-UACGUGACU- ||||||| | |||| |||: ---CAGUUCUG-GCAUGC-CUGGC Vps41 mmu-miR-152 360 379 GGGUUCAAGACAGUACGUGACU- ||||||| ||||| |||: ---CAGUUCUGGCAUGC-CUGGC Vps41 mmu-miR-15a 51 84 -GUGUU-------------UGGUAAUACACGACGAU- ||||: :||| ||||||:|: CCACAGCAGCUGUGUCAACGCCA----GUGCUGUUGA Vps41 mmu-miR-15b 60 84 -ACAUU----UGGUACUACACGACGAU- |||: :||| ||||||:|: CUGUGUCAACGCCA----GUGCUGUUGA Vps41 mmu-miR-16 68 102 -GCGGUUA---UAAA----UGCACGA----CGAU |||||:| :|| |||||: ||| ACGCCAGUGCUGUUGAGUGACGUGUUCAGGGCUC Vps41 mmu-miR-181a 68 88 UGAGUGGCUGUCG-CAACUUACAA |:|| | || |||||:|| --ACGCC-AGUGCUGUUGAGUGA- Vps41 mmu-miR-181c 541 586 -UGAG--------UGGCU--GUCCA-------------ACUUACAA :||| :|| ||||| |||||| AGCUCAGUUAUCUGCCCCAUCAGGUCAUCAAUAUUUGUUGAAUGA- Vps41 mmu-miR-183 56 82 -GUC-ACUUAAGA--UGGUCACGGUAU ||| || || :|||||||::| GCAGCUGUG-UCAACGCCAGUGCUGUU Vps41 mmu-miR-184 111 146 UGGGAAUAGUCAA--------------GAGGCAGGU- ||| :|||||| :||| |||| CCCC--GUCAGUUGUUUUCUCCAGACCUUCCUUCCAG Vps41 mmu-miR-185 6 36 CUUGACGGAAA-------------GAGAGGU- |||||| ||||||| --CCUGCCUGCCCACCCUUUGCCACUCUCCAC Vps41 mmu-miR-195 351 382 -CGGUUAUA---AAGAC---ACGA--CGAU- ||: || ||||| ||| |||| UGCUGGUAACAGUUCUGGCAUGCCUGGCUAC Vps41 mmu-miR-196a 292 316 -GGUUG-UUGUACUUUGAUG-GAU- ||| ::||||| |||:| ||| CCCACCAGGCAUGA-ACUGCACUAC Vps41 mmu-miR-199a* 31 50 UUGGUUACACGUCUGAUGACAU ||| || |: ||||:||| -UCCACUGAGU-GACUGCUGG- Vps41 mmu-miR-200c 190 222 -GGUA---------GUAAUGGGCCGUCAUAAU |||| ||||:|: ||||||| GCCAUGAAAUAUUGCAUUGCUAAUCAGUAUUU Vps41 mmu-miR-210 53 76 AGUCGGCGACAGUG-UGCGUGUC- |||| ||||| | |||| ||| ACAGCAGCUGUGUCAACGC-CAGU Vps41 mmu-miR-212 366 389 -CCGGCACUGACCUC--UGACAAU ||| || |||| |||||| UGGCA-UGCCUGGCUACACUGUUU Vps41 mmu-miR-214 6 50 -GACGGAC---------------AGA-------CACGGACGACA ||||||| ||| ||| |||||| CCUGCCUGCCCACCCUUUGCCACUCUCCACUGAGUGACUGCUGG Vps41 mmu-miR-22 358 390 -UGUCAAGAA-GUU--GACCGU-----CGAA- |||||||| || ||||| |:|| AACAGUUCUGGCAUGCCUGGCUACACUGUUUG Vps41 mmu-miR-27a 44 66 -CGCCUUGAA-UCGGUGACACUU || |:|| ||| :||||| UGCUGGACCACAGCAGCUGUGU- Vps41 mmu-miR-27b 299 323 -CGU-CUUGAAUCGGUGACACUU- ||| ||||| |:|||| ||| GGCAUGAACUGCACUACUGAGAAC Vps41 mmu-miR-28 389 414 GAGUUAUCUGACACUCG----AGGAA ||| || |||||:|: |||| GUCAUCAG-CUGUGGGUAGCCUCCUA Vps41 mmu-miR-293 320 344 -UGUGAUGUUUGAGA-C-GCCGUGA |||||:| |:|| | |||| | AACACUGCCAGCUACAGUCGGC-CA Vps41 mmu-miR-298 166 194 CCUUCUUG----UCGGGAGGAG-ACGG- |:|||| |||:||:| |||| UGGAGAAGUCGAAGCUCUUCCCAUGCCA Vps41 mmu-miR-302 293 315 AGUGGUUUUGUACCUU-CGUGAAU |||| |::|||| ||||| CCACC-AGGCAUGAACUGCACUA- Vps41 mmu-miR-302d 293 315 UGUGAGUUUGUACCUU-CGUGAA ||| ||::|||| ||||| CCAC-CAGGCAUGAACUGCACUA Vps41 mmu-miR-30b 496 526 -UCGACUCAC----AUCC---UACAAAUGU |||||:| ||| ||||||:| UAGCUGGGGUACUAUAGCCUUAUGUUUGCU Vps41 mmu-miR-30c 497 526 -CGACUCUCAC---AUCC---UACAAAUGU ||||:| || ||| ||||||:| AGCUGGG-GUACUAUAGCCUUAUGUUUGCU Vps41 mmu-miR-320 20 42 -AAGCGG-GAGAGUUGGGUCGAAAA ||:||| ||||| ||: ||: CUUUGCCACUCUCCACUGAGUG--- Vps41 mmu-miR-324-3p 53 78 GGUCGUCGUGGACCC--C-GUCACC ||||||| : | ||||| ACAGCAGCUGUGUCAACGCCAGUGC Vps41 mmu-miR-325 25 51 UGUGAA---UGACUCGUGGAUGAUCC |||| ||||||:: ||:||:| CCACUCUCCACUGAGUGACUGCUGGA Vps41 mmu-miR-326 75 110 -UGAC--CUC-CU-------UCCCGGG---UCUCC :||| ||| || |||||:| :||| UGCUGUUGAGUGACGUGUUCAGGGCUCCUCGGAGC Vps41 mmu-miR-338 32 52 AGUUGUUUUAGUGACU-----ACGACCU- |||||| ||||||| ---------CCACUGAGUGACUGCUGGAC Vps41 mmu-miR-34a 288 331 UUGU---UGGUC---------------GAUUC-UGUGACGGU ||| ||||| ||:|| ||||||||| UACACCCACCAGGCAUGAACUGCACUACUGAGAACACUGCCAG Vps41 mmu-miR-34b 314 330 GUUAGUCGAUUAAUGUGACGGAU ||:| |||||||| ------ACUGAGAACACUGCCA- Vps41 mmu-miR-34c 367 390 -CGUUAGUC-GAUUGAUGUGACGGA- ||| | ||::||||||||::| GGCAU---GCCUGGCUACACUGUUUG Vps41 mmu-miR-370 536 567 -UUGGUC----CA--AGGUGGGGUCGUCCG- :||:|| || ||::||||| ||||: UGACUAGCUCAGUUAUCUGCCCCAUCAGGUC Vps41 mmu-miR-380-5p 55 75 CGCGUACAAGAUACCAGU--UGGU- ||| ||:| |||| :||| -AGCAG---CUGU-GUCAACGCCAG Vps41 mmu-miR-383 328 359 -UCGGUGUCAG-UGGAA--------GACUAGA |||:|||||| :|| |||:| CAGCUACAGUCGGCCAAAAGUUCUGCUGGUA- Vps41 mmu-miR-429 202 222 UGCCGUAAUGGUCUGUCAUAAU |||||:|:| ||||||| --UGCAUUGCUAAUCAGUAUUU Vps41 mmu-miR-433-5p 82 107 CUUAUUACUG-------UCCGAGUGGCAU |:|||| :||||| :|| ---GAGUGACGUGUUCAGGGCUCCUCGG- Vps41 mmu-miR-434-3p 78 99 CCUCAGCUCACUAC-CAAGUUU- ||:|||||| | |||||:: --UGUUGAGUGACGUGUUCAGGG Vps41 mmu-miR-434-5p 64 87 CCAAGUU-UGGUACU--CAGCUCGA |||| :||| ||:|||: --GUCAACGCCAGUGCUGUUGAGUG Vps41 mmu-miR-449 294 331 -UGGUC---------------GAUUGUUAUGUGACGGU- ||||| ||:| | ||||||||| CACCAGGCAUGAACUGCACUACUGAGA--ACACUGCCAG Vps41 mmu-miR-449b 359 381 GGUCG--AUCGUUACGUGACGGA- |||: |:||| ||| ||| || ACAGUUCUGGCA-UGC-CUGGCUA Vps41 mmu-miR-450b 296 313 AUAAGUCCUUGUAUGACGUUUU |||| |: |||||| ---CCAGGCAUGAACUGCAC-- Vps41 mmu-miR-468 528 553 GUCUGUGUGCGUGU-----AGUCAGUAU :||:||| | |||||:|| ---CUACGCGCUGACUAGCUCAGUUAUC Vps41 mmu-miR-485-5p 389 412 CUUAAGUAGU----GCCGGUCGGAGA |||||| :|| :|||||| ---GUCAUCAGCUGUGGGUAGCCUCC Vps41 mmu-miR-486 92 111 GAGCCCCGUCGAGUCAUGUCCU || |||| |||:| :| UUCAGGGCUCCUCGGAGCU--- Vps41 mmu-miR-491 87 107 GGAGUACCU-UCCCAAGGGGUGA |:|| |||| |||:|: --ACGUGUUCAGGGCUCCUCGG- Vps41 mmu-miR-497 43 81 -AUG-UUUGGUGUC----ACACG---------ACGAC- |:| ::||||||| ||||: ||||| CUGCUGGACCACAGCAGCUGUGUCAACGCCAGUGCUGU Vps41 mmu-miR-503 55 84 -CGUCAUGACAA------GGG--CGACGAU- ||| :|||| || ||||:|: AGCA--GCUGUGUCAACGCCAGUGCUGUUGA Vps41 mmu-miR-532 281 306 UGCCAGGA----UGUGAGU--UCCGUAC- ||| |||| || ||||||| ----CCCUAGUUACACCCACCAGGCAUGA Vps41 mmu-miR-539 97 132 UGUGUGGUUCCU-------------AUUAAAGAGG- :| || ||| |: ||||||| -GGCUCCUCGGAGCUCCCCGUCAGUUGUUUUCUCCA Vps41 mmu-miR-546 150 166 CUGAGGCACGGUGGUA :|||| ||:||||: UGCUCCUUGUCACCGA Vps41 mmu-miR-551b 380 406 -GUGACUU----UGGUUCAUACCCAGC ||||| |:||: |:||||| ACACUGUUUGUCAUCAGCUGUGGGUA- Vps41 mmu-miR-652 43 75 -ACGUGUUGGGAU------CACC---GCGGUAA ||| :||| ||| ||||| CUGCUGGACCACAGCAGCUGUGUCAACGCCAG- Vps41 mmu-miR-665 94 114 AUUCCCU-GGAGUCG-GAGGACCA |||| ||||:| |||| -CAGGGCUCCUCGGAGCUCCC--- Vps41 mmu-miR-666 96 118 -CCGA-GAGUGUCGACACGGGCGA |||| |||: |||| ||||: GGGCUCCUCGGAGCUC--CCCGUC Vps41 mmu-miR-667 39 69 GAACC--CGACCCAC---CGUC--CACAGU- || ||||| |||| |||||| -GUGACUGCUGGACCACAGCAGCUGUGUCAA Vps41 mmu-miR-668 61 91 CCAUCACC----CGG-CU---CGGCUCACUGU- ||| ||| | | |||||||: ---UGUGUCAACGCCAGUGCUGUUGAGUGACGU Vps41 mmu-miR-669a 299 321 -UGUACUUGUACGUG-UGUGUUGA :||||||| ||||| || |: GGCAUGAAC-UGCACUACUGAGA- Vps41 mmu-miR-670 68 100 AAGUGGUGUAUGUGA-------------GUCCCUA |:||| :|:| | ||||| -ACGCCA-GUGCUGUUGAGUGACGUGUUCAGGGC- Vps41 mmu-miR-671 125 158 -GGAGGUCG----GGGAGGUCC-CGA--AGGA- :|||||| ||:||||| ||| |||| UUCUCCAGACCUUCCUUCCAGAAGCUGCUCCUU Vps41 mmu-miR-673 29 66 -GAGGUU------------CCUGGUC---UCGACACUC ||||| |||||| ||||||| UCUCCACUGAGUGACUGCUGGACCACAGCAGCUGUGU- Vps41 mmu-miR-674 23 43 AUGUGGUGAG-GGUAGAGUCACG :|||||| ||| || |||| --UGCCACUCUCCA-CUGAGUGA Vps41 mmu-miR-676 82 101 -UCGAGUUGUUGGAGUCCUGCC ||: :||: :|||||:| GAGU--GACGUGUUCAGGGCU- Vps41 mmu-miR-677 142 167 AGUCUUCGAUUAG---UAGUGACUU ||||||||: || :|||| || CCAGAAGCUGCUCCUUGUCACCGAU Vps41 mmu-miR-678 138 170 -GGAGGUC-------AGGAAC-GUGGCU-CUG |:||||| |||||| |||||| |: CCUUCCAGAAGCUGCUCCUUGUCACCGAUGGA Vps41 mmu-miR-681 57 84 -UCGACGGA----CGGUCGCUCCGAC- |||||: | |||||:| |:|| CAGCUGUGUCAACGCCAGUGCUGUUGA Vps41 mmu-miR-682 26 50 GUCUGAA--GUGA--CACUGACGUC- ||| |||| |||||||| | --CACUCUCCACUGAGUGACUGCUGG Vps41 mmu-miR-683 36 61 -CUC-CUGUGUCGAA----UGUCGUCC ||| ||| ||| ||||||| UGAGUGACU--GCUGGACCACAGCAGC Vps41 mmu-miR-684 476 494 AACUGAACUUCCCUUUUGA |||| || |||||:|| GUGACAUGU-GGGAAGACC Vps41 mmu-miR-686 158 179 AGAAGUGGCAGACC-CUUC-GUUA |||||| ||| |||| |:| --GUCACCGA-UGGAGAAGUCGAA Vps41 mmu-miR-691 550 566 AAAAGACGGAGAGAAGUCCUUA |||||| | | ||||| --AUCUGCC-C-CAUCAGGU-- Vps41 mmu-miR-695 543 563 AAGUCAGUGGAUACGGGUUAGA |||||:|:| ||||| ||| CUCAGUUAUC--UGCCCCAUCA Vps41 mmu-miR-7 162 188 -GUUG---UUUUAGUGAUC-AGAAGGU |:|: :||:||: || |||||| CCGAUGGAGAAGUCGA-AGCUCUUCCC Vps41 mmu-miR-700 95 118 CCACCUG---AGCCA--AGGGCGCAC ||:| |||| |||| ||| --AGGGCUCCUCGGAGCUCCC-CGUC Vps41 mmu-miR-705 11 38 -ACGGGUGGGG--UGG--AG-GGUGG- |||||||||: :|| || ||||: CUGCCCACCCUUUGCCACUCUCCACUG Vps41 mmu-miR-707 354 378 GCAUCCGU--UCG---CCGUACUGAC- ||:| ||: |||||| ||| ---UGGUAACAGUUCUGGCAUGCCUGG Vps41 mmu-miR-708 104 124 AUCUUCGAGUGUCAGAUCAAC- |:||||| | ||| ||||| -CGGAGCUCCCCGUC-AGUUGU Vps41 mmu-miR-709 5 35 AGGA-GGACGG-----AGACGG----AGG- ||| |||||| |:|||| ||| GCCUGCCUGCCCACCCUUUGCCACUCUCCA Vps41 mmu-miR-711 93 115 GAAUGUAGAGAGGGGCC-C-AGGG- || ||||:||| | |||| ---UCAGGGCUCCUCGGAGCUCCCC Vps41 mmu-miR-713 58 79 -CGACACA----CGGAAGUCACGU ||||||| ||| ||||| AGCUGUGUCAACGCC---AGUGCU Vps41 mmu-miR-721 182 210 -AAGGG---GGAAAAU--UAACGUGAC- ||||| || ||||||:|| CUUCCCAUGCCAUGAAAUAUUGCAUUGC Vps41 mmu-miR-742 363 381 AAAUGGGUCGUACC-ACCGAAAG :|::||||| ||||| ---UUCUGGCAUGCCUGGCUA-- Vps41 mmu-miR-744 533 560 -CGACA-AUCGGGAU------CGGGGCGU |||| ||||:| ||||| CGCUGACUAGCUCAGUUAUCUGCCCCA-- Vps41 mmu-miR-758 558 573 AUCACCUGGUCCAGU-GUUU |:||||||| ||| -----CAUCAGGUCAUCAAU Vps41 mmu-miR-761 60 82 -ACACAGUCAAAGUGGG-ACGACG- ||||||| |:|| |||||: CUGUGUCAA---CGCCAGUGCUGUU Vps41 mmu-miR-763 349 381 CGGUGACCA------AGAA-----GGGUCGACC |::||||| ||| ||::||| UCUGCUGGUAACAGUUCUGGCAUGCCUGGCUA- Vps41 mmu-miR-764-3p 381 414 -UGUC-AACGG----UGAUAC----CGGAGGA- || | |||:| :||:|| ||||||| CACUGUUUGUCAUCAGCUGUGGGUAGCCUCCUA Vps41 mmu-miR-7b 169 188 UUGUUUUAGUGUUC-AGAAGGU :||:||: ||| |||||| --AGAAGUCG-AAGCUCUUCCC Vps41 mmu-miR-93 294 315 GAUGGA-CGUGCUUGUCGUGAAAC ||| |||:|||| ||||| -CACCAGGCAUGAACUGCACUA-- Vps41 mmu-miR-200b 214 221 CAGUA--------------------GUAAUGGUCCGUCAUAAU ||||:|:| ||||||| GCUCUUCCCAUGCCAUGAAAUAUUGCAUUGCUAAUCAGUAUUU Vps41 mmu-miR-200c 214 221 ------------GGUA---------GUAAUGGGCCGUCAUAAU |||| ||||:|: ||||||| GCUCUUCCCAUGCCAUGAAAUAUUGCAUUGCUAAUCAGUAUUU Vps41 mmu-miR-207 167 174 CUCCCUCC----UCU-CGGU---------------CCUCUUCG ||| ||: |||||||: GACCUUCCUUCCAGAAGCUGCUCCUUGUCACCGAUGGAGAAGUC Vps41 mmu-miR-223 460 467 CC-------------------CCAUAA-ACUG--UUUGACUGU |||| || :|||||||| GAGGUAAAAAUUAAAAUUAAAGGUAAAAUGCUGAGAACUGACAC Vps41 mmu-miR-34a 322 329 U---------------------UGUUGGUCGAUUC-UGUGACGGU :|| |:| ||:|| ||||||||| UUACACCCACCAGGCAUGAACUGCA-CUA-CUGAGAACACUGCCAG Vps41 mmu-miR-34c 322 329 ----------------------CGUUAGUCGAUUGAUGUGACGGA ||| | ||:| |||||||| UUACACCCACCAGGCAUGAACUGCA--CUACUGAGAACACUGCCA Vps41 mmu-miR-429 214 221 UGC---------------------CGUAAUGGUCUGUCAUAAU |||||:|:| ||||||| GCUCUUCCCAUGCCAUGAAAUAUUGCAUUGCUAAUCAGUAUUU Vps41 mmu-miR-449 322 329 --------UGGUC---------------GAUUGUUAUGUGACGGU ||||| ||:| | ||||||||| UUACACCCACCAGGCAUGAACUGCACUACUGAGA--ACACUGCCAG Vps41 mmu-miR-449b 322 329 ------GGUCGAUCGUUAC-----------------GUGACGGA ||| | :||| || ||||||| UUACACCCACCAGGCA-UGAACUGCACUACUGAGAACACUGCCA Vps41 mmu-miR-668 37 44 CCAUCACC--------------CGGCUC-----GGCUCACUGU ||| |:||||||| CCUGCCUGCCUGCCCACCCUUUGCCACUCUCCACUGAGUGACU Vps41 mmu-miR-668 82 89 CCAU-----------CACC----CGG-CU---CGGCUCACUGU ||| ||| | |::|||||||: UGGACCACAGCAGCUGUGUCAACGCCAGUGCUGUUGAGUGACGU Vps41 mmu-miR-683 53 60 -------------------CUC-CUGUGUCGAA----UGUCGUCC ||| ||| ||| ||||||| CCCUUUGCCACUCUCCACUGAGUGACU--GCUGGACCACAGCAGC Vps41 mmu-let-7a 506 531 UGAUAU----GU-UGGAUGAUGGAgu |||||| :| :::|:|||||| ACTATAGCCTTATGTTTGCTACCTac Vps41 mmu-let-7b 525 546 uUGG-UGUGUUGGAUGAUGGAGU ||| ||:| :|: |||| |||| tACCTACGC-GCTGACTAGCTCA Vps41 mmu-let-7c 511 531 UUGGUAUGUUGGAUGAUGGAgu |:|| ||: :::|:|||||| AGCCTTAT-GTTTGCTACCTac Vps41 mmu-let-7d 506 531 UGAUA-CG---U-UGGAUGAUGGAga ||||| || | :::|:|||||| ACTATAGCCTTATGTTTGCTACCTac Vps41 mmu-let-7f 506 531 UGAUAU----GU-UAGAUGAUGGAgu |||||| :| :|:|:|||||| ACTATAGCCTTATGTTTGCTACCTac Vps41 mmu-miR-101a 54 81 gaaGUC-A-AUAGU----GUCAUGACAu ||| | |:||| ||||:|||| cagCAGCTGTGTCAACGCCAGTGCTGTt Vps41 mmu-miR-101b 54 81 gaaGUCG--AUAGU----GUCAUGACAu |||| |:||| ||||:|||| cagCAGCTGTGTCAACGCCAGTGCTGTt Vps41 mmu-miR-107 54 81 acuaUCGGGACA--U---GUUACGACGA |||: ||| | ||:|||||:| cagcAGCTGTGTCAACGCCAGTGCTGTT Vps41 mmu-miR-122a 11 34 uguuuGU-GGUAACAGUGUGAGGU || || ||| ||| ||||| ctgccCACCCTTTGCCACTCTCCA Vps41 mmu-miR-125a 70 99 guGUC----CAAUUUCC--CA-GAGUCCCu ||| |||:|: | || :|||||| gcCAGTGCTGTTGAGTGACGTGTTCAGGGc Vps41 mmu-miR-125b 78 99 aguguUCAAUCCCAGAGUCCCu ||| | | :|||||| tgttgAGTGACGTGTTCAGGGc Vps41 mmu-miR-128a 43 65 uuuucuCUGGCCAAGU-GACACu |||| || ||||| ctgctgGACCACAGCAGCTGTGt Vps41 mmu-miR-129-3p 74 101 uACGAAAA---AC--C-CCAUUCCCGAa |||| || || | | | |||||| gTGCTGTTGAGTGACGTGTTCAGGGCTc Vps41 mmu-miR-130a 188 208 UACGGGAAAAUUGUAACGUGAC ||| || | ||:||||||:|| ATG-CCATGAAATATTGCATTG Vps41 mmu-miR-132 69 94 GCUGGUACCGACA--U--CUG-ACAAu || ||| ||||| | ||| |||| CG-CCAGTGCTGTTGAGTGACGTGTTc Vps41 mmu-miR-140 476 497 gAUGGUAUCCCAUUUUGGUGAc |: |||: || ||:||||:| gTGACATGTGGGAAGACCATTa Vps41 mmu-miR-140* 480 506 aggCACCAAGAUGG-----GACACCAU |||| ||| ||| |||| catGTGGGAAGACCATTAGCTGGGGTA Vps41 mmu-miR-143 375 397 ACUCGAUGUCACGA--AGUAGagu || |||||| ||:| ||||| TG-GCTACACTGTTTGTCATCagc Vps41 mmu-miR-148a 357 386 ugUUUCAAGAC-------AUC-ACGUGACu | ||||||| |:| | ||||| taACAGTTCTGGCATGCCTGGCTACACTGt Vps41 mmu-miR-148b 357 377 ugUUUCAAGACACUACGUGACu | ||||||| |||| ||| taACAGTTCTGGCATGC-CTGg Vps41 mmu-miR-152 357 377 ggguUCAAGACAGUACGUGACu ||||||| ||||| ||| taacAGTTCTGGCATGC-CTGg Vps41 mmu-miR-15a 64 82 guGUU-UGGUAAUACACGACGAu ||| :||| ||||||:| gtCAACGCCA----GTGCTGTTg Vps41 mmu-miR-15b 63 82 ACAUUU--GGUACUACACGACGAu ||| || ||| ||||||:| TGTCAACGCCA----GTGCTGTTg Vps41 mmu-miR-16 69 82 GCGGUUAUAAAUGCACGACGAu ||||| ||||||:| CGCCA--------GTGCTGTTg Vps41 mmu-miR-181a 63 88 ugAGUGGCUGUC---GCAACUUACaa ||| || ||| :|||||:|| tgTCAACGCCAGTGCTGTTGAGTGac Vps41 mmu-miR-181c 563 586 ugAGUGGCUGU--CCAACUUACaa |||:| |:| |||||||| ggTCATCAATATTTGTTGAATGaa Vps41 mmu-miR-183 57 81 GUC-ACUUAAGAU--GGUCACGGUAu ||| || : || | |||||||::| CAGCTGTG-TCAACGCCAGTGCTGTt Vps41 mmu-miR-184 98 119 uGGGAAUAGUCAAGAGGCAGgu |:| | || || ||||| gCTCCTCGGAGCTCCCCGTCag Vps41 mmu-miR-185 19 34 cuugACGGAAAGAGAGGU |||| ||||||| ccttTGCCA--CTCTCCA Vps41 mmu-miR-195 340 358 CGGUUAUAAAGACACGACGAU ||||| | ||| ||||| || GCCAAAAGTTC--TGCTGGTA Vps41 mmu-miR-196a 293 318 GGUUGU-UGUACUU----UGAUGgau ||| || :|||||| ||||| CCACCAGGCATGAACTGCACTACtga Vps41 mmu-miR-199a* 30 50 uuGGUUACACGUCUGAUGACau ||| || |: ||||:||| ctCCACTGAGT-GACTGCTGga Vps41 mmu-miR-200b 199 221 caguaGUAAUGGUCCGUCAUAAu ||||:|:| ||||||| tattgCATTGCTAATCAGTATTt Vps41 mmu-miR-200c 200 221 gguaGUAAUGGGCCGUCAUAAu ||||:|: ||||||| attgCATTGCTAATCAGTATTt Vps41 mmu-miR-207 150 174 cucccuccucucGGU--CCUCUUCg ||: ||||||| tgctccttgtcaCCGATGGAGAAGt Vps41 mmu-miR-212 367 388 CCGGCACUGACC--UCUGACAAu || | || |||| | |||||| GG-CATGCCTGGCTACACTGTTt Vps41 mmu-miR-214 1 17 gaCGGACAGACACGGACGaca ||||| | ||||||| --GCCTGCC--TGCCTGCcca Vps41 mmu-miR-214 22 49 gACGGACAGA-------CACGGACGACa |||| ||| ||| |||||| tTGCCACTCTCCACTGAGTGACTGCTGg Vps41 mmu-miR-22 382 409 UGUCA---AGAAGUUGA---CCGUCGaa || || || |||:|| ||:||| ACTGTTTGTCATCAGCTGTGGGTAGCct Vps41 mmu-miR-22 344 375 UGUCAAGAAG----UU-----GACCGU-CGaa | |||||| | || |||||| || AAAGTTCTGCTGGTAACAGTTCTGGCATGCct Vps41 mmu-miR-223 444 467 ccCCA---UA-AACUGUUUGACUGU ||| || ||| :|||||||| aaGGTAAAATGCTGA-GAACTGACA Vps41 mmu-miR-27a 45 66 CG-CCUUGAAUCGGUGACACuu || ||| | ||| :||||| GCTGGACCACAGCAGCTGTGtc Vps41 mmu-miR-27b 300 321 CGU-CUUGAAUCGGUGACACUU ||| ||||| |:|||| ||| GCATGAACTGCACTACTGAGAA Vps41 mmu-miR-293 321 344 UGUGAUGUUUGA-GAC-GCCGuga |||||:| |:|| | | |||| ACACTGCCAGCTACAGTCGGCcaa Vps41 mmu-miR-302 293 315 aGUGGUUUUGUACCU-UCGUGAau |||| |::|||| | ||||| cCACC-AGGCATGAACTGCACTac Vps41 mmu-miR-30b 497 525 UCGACUC----ACAUC---CUACAAAUGu |||||:| | ||| ||||||:| AGCTGGGGTACTATAGCCTTATGTTTGCt Vps41 mmu-miR-30c 498 525 CGACUC--UCACAUC---CUACAAAUGu ||||:| | | ||| ||||||:| GCTGGGGTACTATAGCCTTATGTTTGCt Vps41 mmu-miR-320 38 64 aagCGGGAGAGUUGG----GUCGAAAa | |: || :||| ||||| | agtGACTGCTGGACCACAGCAGCTGTg Vps41 mmu-miR-324-3p 51 77 GGUCGUCGUGGAC-C-----CCGUCACc ||| ||||| ||| | | ||||| CCA-CAGCAGCTGTGTCAACGCCAGTGc Vps41 mmu-miR-325 27 50 UGUGA-AUGACUCGUGGAUGAUCc || || ||||||:: ||:||:| ACTCTCCACTGAGTGACTGCTGGa Vps41 mmu-miR-326 76 109 uGAC--CUC-CU-------UCCC---GGGUCUCc ||| ||| || |||| |:|:||| gCTGTTGAGTGACGTGTTCAGGGCTCCTCGGAGc Vps41 mmu-miR-338 31 50 AGUUGUUUUAGUGACUACGACCU || || :|:| || ||||||| TCCACTGAGTGAC---TGCTGGA Vps41 mmu-miR-34a 305 329 UUGUUG-GUCGAUUC-UGUGACGGU ||| :| | ||:|| ||||||||| AACTGCACTACTGAGAACACTGCCA Vps41 mmu-miR-34b 308 330 guuagucGAUUAAUGUGACGGau ||:| |||||||| tgcactaCTGAGAACACTGCCag Vps41 mmu-miR-34c 309 329 CGUUAGUCGAUUGAUGUGACGGa ||| | ||:| |||||||| GCA--CTACTGAGAACACTGCCa Vps41 mmu-miR-34c 368 388 CGUUAGUCGAUUGAUGUGACGGA ||| | ||::||||||||::| GCATGC--CTGGCTACACTGTTT Vps41 mmu-miR-351 88 109 GUCCGAGUUUCCCGAGGAGUCCCu |: |:|| ||||||||||:| | CGTGTTC--AGGGCTCCTCGGAGc Vps41 mmu-miR-370 541 565 UUG-GUCCA-AGGUGGGGUCGUCCg |:| ||| | ||::||||| |||| AGCTCAGTTATCTGCCCCATCAGGt Vps41 mmu-miR-380-5p 54 71 cgCGUACAAGAUACCAGUUGgu ||| | ||:| |||||| caGCA-G--CTGT-GTCAACgc Vps41 mmu-miR-381 142 162 uGUCUCUCGAACG-GGAACAuau |||| ||| ||| |||||| cCAGA-AGC-TGCTCCTTGTcac Vps41 mmu-miR-383 329 356 UCGGUGUCAG-UGG-----AAGACUAga |||:|||||| :|| ||||| | AGCTACAGTCGGCCAAAAGTTCTGCTgg Vps41 mmu-miR-429 200 221 UGCCGUAAUGGUCUGUCAUAAu |: |||||:|:| ||||||| ATTGCATTGCTAATCAGTATTt Vps41 mmu-miR-433-5p 95 117 cuuauuacuGUC-CGAGUGGCAu |:| |||| |||| agggctcctCGGAGCTCCCCGTc Vps41 mmu-miR-434-3p 76 97 ccuCAGCUCACUAC-CAAGUuu ||:|||||| | ||||| gctGTTGAGTGACGTGTTCAgg Vps41 mmu-miR-434-5p 61 86 cCA-AGUU-UGGU-AC-UCAGCUCga || |||| :||| || ||:||| tGTGTCAACGCCAGTGCTGTTGAGtg Vps41 mmu-miR-449 311 329 UGGUCGAUUGUUAUGUGACGGU ||:| ||:| | ||||||||| ACTA-CTGAGA--ACACTGCCA Vps41 mmu-miR-449b 309 329 gGUCGAUCGUUAC--GUGACGGa || ||| ::| | ||||||| gCA-CTACTGA-GAACACTGCCa Vps41 mmu-miR-449b 370 388 ggucGAUCGUUACGUGACGGA ||:|| | |||||::| atgcCTGGC--TACACTGTTT Vps41 mmu-miR-450b 293 314 auaaGUCCUUGUAUGACGUuuu |||| |:: |||||| ccacCAGGCATGAACTGCActa Vps41 mmu-miR-468 545 569 GUCUGUGUGC-GUGUAGU-CAGUAu ||| :|: :| | ||||| ||||| CAGTTATCTGCCCCATCAGGTCATc Vps41 mmu-miR-485-5p 386 411 cuuaAGUAGU----GCCGGUCGGAGa |||||| :|| :|||||| tttgTCATCAGCTGTGGGTAGCCTCc Vps41 mmu-miR-486 70 98 gaGCCCCGUCGAGU-------CAUGUCCu | | || |:| | || |||| gcCAGTGCTGTTGAGTGACGTGTTCAGGg Vps41 mmu-miR-491 101 117 GGAGUACCUUCCCAAGGGGuga |||| ||| | ||||| CCTC--GGA---GCTCCCCgtc Vps41 mmu-miR-497 26 48 aUGUUUGGUGUCACAC-GACGAC || |||| | ||| |||||| cACTCTCCACTGAGTGACTGCTG Vps41 mmu-miR-497 63 82 AUGUUUGGUGUCACACGACGAC |:: ||| || ||||||:|| TGTCAACGCCA--GTGCTGTTG Vps41 mmu-miR-503 56 79 CGUCAUGACAAGG--GCG---ACGAu |||| |||| :| ||| |||| GCAG--CTGTGTCAACGCCAGTGCTg Vps41 mmu-miR-532 283 304 ugcCAGGAUGUGAGUUCCGUAC ||: || | | ||||||| ctaGTTACACCCACCAGGCATG Vps41 mmu-miR-539 111 130 uGUGUGGUUCCUAUUAAAGAGG | |::|| | |: ||||||| cCCCGTCA--GTTGTTTTCTCC Vps41 mmu-miR-542-5p 83 117 gCACUGUACUA------------CU--AGGGGCuc |||||:|| | || |||||| aGTGACGTGTTCAGGGCTCCTCGGAGCTCCCCGtc Vps41 mmu-miR-551b 381 406 GUG----ACUUUGGUUCAUACCCAgc ||| || |:||: |:||||| CACTGTTTGTCATCAGCTGTGGGTag Vps41 mmu-miR-652 50 75 acGUGUUG-GGAUCAC---CGCGGUaa ||||:| || ||| ||||| acCACAGCAGCT-GTGTCAACGCCAgt Vps41 mmu-miR-665 81 107 AUUCCCUG---GAGU-CGGAGGA-CCa |:|| ||| :||| | ||||| || TGAGTGACGTGTTCAGGGCTCCTCGGa Vps41 mmu-miR-666 97 117 CCGA-GAGUGUCGACACGGGCga |||| |||: ||| | |||| GGCTCCTCGGAGC--TCCCCGtc Vps41 mmu-miR-667 40 67 gaaccCGACC---CACCGUC--CACAGU ||||| |||| |||||| tgactGCTGGACCACAGCAGCTGTGTCA Vps41 mmu-miR-668 62 89 ccaucaccCGG-CUCG---GCUCACUGu ||| | || :||||||| gtgtcaacGCCAGTGCTGTTGAGTGACg Vps41 mmu-miR-668 21 44 ccaucacccggcucGGCUCACUGu |:||||||| tttgccactctccaCTGAGTGACt Vps41 mmu-miR-669a 300 328 uGUACUUGUACGUG--------UGUGUUGa ||||||| ||||| |||| :| gCATGAAC-TGCACTACTGAGAACACTGCc Vps41 mmu-miR-670 81 100 aaguggUGUAUGUGAGUCCCua ||:| ::|||||| tgagtgACGT--GTTCAGGGct Vps41 mmu-miR-671 126 156 gGAGGUC----GGGGAGGUC-CCGA--AGGA |||||| :||:||||| ||| |||| tCTCCAGACCTTCCTTCCAGAAGCTGCTCCT Vps41 mmu-miR-673 43 66 GAGGUUCCUG--GUC-UCGACACuc || | |||| ||| ||||||| CTGC-TGGACCACAGCAGCTGTGtc Vps41 mmu-miR-673 63 87 gagGUUCCUGGUCUCGAC-ACUC--- ||| | |||| |||| |||| tgtCAACG-CCAGTGCTGTTGAGTGA Vps41 mmu-miR-674 21 42 AUGUGGUGAGGGUAGAGUCACg | ::||||||:| || |||| TTTGCCACTCTCCACTGAGTGa Vps41 mmu-miR-674* 89 113 aACAAGACUC---UACCCUCGAcac ||||| |:| | |||||| gTGTTCAGGGCTCCTCGGAGCTccc Vps41 mmu-miR-676 78 101 uCGAGUUGUUG---GAGUCCUGcc |:| |:::|| :|||||:| tGTTGAGTGACGTGTTCAGGGCtc Vps41 mmu-miR-678 139 168 GGAGGUC-------AGGAAC-GUGGCUcug |:||||| |||||| |||||| CTTCCAGAAGCTGCTCCTTGTCACCGAtgg Vps41 mmu-miR-681 55 79 UCGACGG-ACGGU--CGCUC-CGAC ||| ||: ||:|| || || |||| AGCAGCTGTGTCAACGCCAGTGCTG Vps41 mmu-miR-683 37 60 CUC-CUG-UG-UCGAAUGUCGUCc ||| ||| :| :| ||||||| GAGTGACTGCTGGACCACAGCAGc Vps41 mmu-miR-686 156 183 AGAAGUGGCAGACC-------CUUCGuua |: |||||| ||| ||||| TTGTCACCG-ATGGAGAAGTCGAAGCtct Vps41 mmu-miR-691 548 567 AAAAGACGGAGAGAAGUCCuua || |||||| | | ||||| TTATCTGCC-C-CATCAGGtca Vps41 mmu-miR-7 166 187 guuguUUUAGUGAUC-AGAAGGu ||:||: || |||||| tggagAAGTCG-AAGCTCTTCCc Vps41 mmu-miR-700 93 117 ccaCCUGAG----C-CAAGGGCGCAc ||:||| | | |||| ||| tcaGGGCTCCTCGGAGCTCCC-CGTc Vps41 mmu-miR-705 12 36 ACGGGUGGG----GUGGAG-GGUGg ||||||||| | ||| |||| TGCCCACCCTTTGCCACTCTCCACt Vps41 mmu-miR-707 351 376 gcauCCGU--UC---GCCGUACUGAC ||:| || :|||||| ||| tgctGGTAACAGTTCTGGCATGCCTG Vps41 mmu-miR-708 103 122 AUCUUCGAGUGUCAGAUCAAC | |:||||| | ||| ||||| TCGGAGCTCCCCGTC-AGTTG Vps41 mmu-miR-709 1 14 aggaGGACGGAGACGGAgg ||||| |||||| ---gCCTGC--CTGCCTgc Vps41 mmu-miR-711 90 113 gaAUGUAGAGAGGGGCC-C-AGGG | || ||||:||| | |||| tgTTCAGGGCTCCTCGGAGCTCCC Vps41 mmu-miR-713 59 78 CGACACA----CGGAAGUCACGu ||||||| || |||||| GCTGTGTCAACGC---CAGTGCt Vps41 mmu-miR-721 183 208 AAGGG---GGAAAAU--UAACGUGAC ||||| || | | ||||||:|| TTCCCATGCCATGAAATATTGCATTG Vps41 mmu-miR-742 360 382 aaaugGGUCGUAC-CACCGAaag |::||||| ||||| cagttCTGGCATGCCTGGCTaca Vps41 mmu-miR-744 534 561 CGAC-AAUCGGG---AU---CGGGGcgu |||| ||||:| || ||||| GCTGACTAGCTCAGTTATCTGCCCCatc Vps41 mmu-miR-758 553 572 aucaccUGGUCCAGU-GUUu |:||||||| ||| tgccccATCAGGTCATCAAt Vps41 mmu-miR-761 61 80 ACACAGUCAAAGUG-GG--ACGACg ||||||| || || ||||| TGTGTCA-----ACGCCAGTGCTGt Vps41 mmu-miR-763 377 400 CG--GUGACCAAGAAGGGUCGACc || ||||| || | :|||||| GCTACACTGTTTGTCATCAGCTGt Vps41 mmu-miR-764-3p 393 412 uGUCAACGGUGAUACCGGAGGA ||| ||: : || ||||||| tCAGCTGTGGGTA--GCCTCCT Vps41 mmu-miR-7b 167 187 uuguUUUAGUGUUC-AGAAGGu ||:||: ||| |||||| ggagAAGTCG-AAGCTCTTCCc Vps41 mmu-miR-93 293 316 GAUGG-ACGUGCUUGUCGUGAaac | ||| |||:|||| ||||| CCACCAGGCATGAACTGCACTact

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Vps41 RAID00014915 mmu-miR-429-3p miRNA MIMAT0001537 Vps41 mRNA 218035 Prediction 0.2202 Vps41 RAID00065152 mmu-miR-875-5p miRNA MIMAT0004937 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00212372 mmu-miR-497a-5p miRNA MIMAT0003453 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00325501 mmu-miR-7049-5p miRNA MIMAT0028002 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00337306 mmu-miR-338-3p miRNA MIMAT0000582 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00428290 mmu-miR-103-3p miRNA MIMAT0000546 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00479240 mmu-miR-758-3p miRNA MIMAT0003889 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00534362 mmu-miR-449c-5p miRNA MIMAT0003460 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00547658 mmu-miR-199b-3p miRNA MIMAT0004667 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00579385 mmu-miR-6945-3p miRNA MIMAT0027791 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00617441 mmu-miR-15b-5p miRNA MIMAT0000124 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00801015 mmu-miR-6927-3p miRNA MIMAT0027755 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00891562 mmu-miR-495-3p miRNA MIMAT0003456 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID00907929 mmu-miR-200c-3p miRNA MIMAT0000657 Vps41 mRNA 218035 Prediction 0.2202 Vps41 RAID00913239 mmu-miR-1192 miRNA MIMAT0005850 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID01224870 mmu-miR-668-3p miRNA MIMAT0003732 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID01253477 mmu-miR-181b-5p miRNA MIMAT0000673 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID01391753 mmu-miR-488-3p miRNA MIMAT0003450 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID01474793 mmu-miR-7652-5p miRNA MIMAT0029810 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID01538467 mmu-miR-486a-3p miRNA MIMAT0017206 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID01715235 mmu-miR-6986-3p miRNA MIMAT0027875 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID01832891 mmu-miR-207 miRNA MIMAT0000240 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID01875888 mmu-miR-326-5p miRNA MIMAT0017027 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID01887185 mmu-miR-449a-5p miRNA MIMAT0001542 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID01895112 mmu-miR-449b miRNA MIMAT0005447 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02224956 mmu-miR-122-5p miRNA MIMAT0000246 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02263578 mmu-miR-6920-5p miRNA MIMAT0027740 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02264945 mmu-miR-5114 miRNA MIMAT0020622 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02289865 mmu-miR-3065-5p miRNA MIMAT0014836 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02323034 mmu-miR-7094b-2-5p miRNA MIMAT0028096 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02445626 mmu-miR-224-5p miRNA MIMAT0000671 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02522333 mmu-miR-433-3p miRNA MIMAT0001420 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02577631 mmu-miR-664-3p miRNA MIMAT0012774 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02608201 mmu-miR-486b-3p miRNA MIMAT0014944 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02662949 mmu-miR-7a-1-3p miRNA MIMAT0004670 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02709714 mmu-miR-421-3p miRNA MIMAT0004869 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02789722 mmu-miR-3061-3p miRNA MIMAT0014829 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02798035 mmu-miR-590-3p miRNA MIMAT0004896 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02834108 mmu-miR-504-5p miRNA MIMAT0004889 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02856633 mmu-miR-181d-5p miRNA MIMAT0004324 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID02943508 mmu-miR-181a-5p miRNA MIMAT0000210 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03110416 mmu-miR-6417 miRNA MIMAT0025172 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03187183 mmu-miR-181c-5p miRNA MIMAT0000674 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03206146 mmu-miR-34b-5p miRNA MIMAT0000382 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03243277 mmu-miR-7116-3p miRNA MIMAT0028130 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03249383 mmu-miR-6954-5p miRNA MIMAT0027808 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03350922 mmu-miR-15a-5p miRNA MIMAT0000526 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03352264 mmu-miR-223-3p miRNA MIMAT0000665 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03392340 mmu-miR-6951-3p miRNA MIMAT0027803 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03446957 mmu-miR-129-5p miRNA MIMAT0000209 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03622148 mmu-miR-200b-3p miRNA MIMAT0000233 Vps41 mRNA 218035 Prediction 0.2202 Vps41 RAID03656899 mmu-miR-34a-5p miRNA MIMAT0000542 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03808917 mmu-miR-7085-3p miRNA MIMAT0028077 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03863187 mmu-miR-34c-5p miRNA MIMAT0000381 Vps41 mRNA 218035 Prediction 0.1828 Vps41 RAID03880382 mmu-miR-107-3p miRNA MIMAT0000647 Vps41 mRNA 218035 Prediction 0.1828