Tom1
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0004523mmu-miR-29b*21968Tom1auUUGGUGGUAUACUUUGGUcg ||: | :|| |||||| caAAUAAAAGUAGAAAACCAcc321686707[mm9:8:77593989-77594010:+]0.63581320-11.93-0.1494
MIMAT0004530mmu-miR-127*21968Tom1uaGUCUCGGG--AGACUCGAAGUc ::|:|||| ||||||| agUGGGGCCCGAAAAAAGCUUCAg221409432[mm9:8:77593712-77593735:+]0.55051437-24.98-0.4550
MIMAT0000161mmu-miR-151-3p21968Tom1ggaguuccucggaGUCAGAUc ||||||| gacucuacacuaaCAGUCUAg29339359[mm9:8:77593642-77593662:+]0.52611407-16.72-0.3182
MIMAT0004545mmu-miR-200b*21968Tom1agguuacGACGGGU---CA-UUCUAc ||||||| || ||||| caucucaCUGCCCAGGUGUCAAGAUg216510535[mm9:8:77593813-77593838:+]0.54481220-24.38-0.1623
MIMAT0004547mmu-miR-203*21968Tom1acaacUUGACAGUUCUUGGUGa || || :| |||||| caaauAAAAGUAGAAAACCACc218686707[mm9:8:77593989-77594010:+]0.63581256-8.66-0.1776
MIMAT0000374mmu-miR-296-5p21968Tom1uguccuaAC-UC-CCCCCCGGGa || || | ||||||| aucccccUGCAGAGUGGGGCCCg215397419[mm9:8:77593700-77593722:+]0.53831447-20.12-0.3651
MIMAT0000374mmu-miR-296-5p21968Tom1uguccUAACUC--CCCCCCGGGa | |||| ||||||| auuuuACUGAGACCUGGGGCCCc217217239[mm9:8:77593520-77593542:+]0.53921437-20.06-0.3524
MIMAT0000374mmu-miR-296-5p21968Tom1uguccuaacucccCCCCGGGa ||||||| ucucauacccacuGGGGCCCc293959[mm9:8:77593342-77593362:+]0.47231407-16.46-0.1344
MIMAT0004616mmu-miR-30c-1*21968Tom1ccucauuuguuGGGAGAGGGUc :|:||||||| uaccccgcuucUCUUCUCCCAg21299120[mm9:8:77593402-77593423:+]0.39781477-20.63-0.2310
MIMAT0005438mmu-miR-30c-2*21968Tom1ucucauuugucGGAAGAGGGUc :||||||||| uaccccgcuucUCUUCUCCCAg21299120[mm9:8:77593402-77593423:+]0.39781517-21.11-0.2310
MIMAT0004638mmu-miR-323-5p21968Tom1cgcuugcgcggugccUGGUGGa |||||| aaauaaaaguagaaaACCACC-28687707[mm9:8:77593990-77594010:+]0.63581206-12.53-0.1845
MIMAT0000605mmu-miR-35021968Tom1cuuUCACAUACC--CGAA-ACACUu :||||| || |||| ||||| ccuGGUGUAAGGCUGCUUCUGUGAu220270294[mm9:8:77593573-77593597:+]0.52611340-17.38-0.3236
MIMAT0004789mmu-miR-450a-3p21968Tom1uacuuacguuuCGUAGGGGUUa |:|||||||| aggugccuuuuGUAUCCCCAAa212668689[mm9:8:77593971-77593992:+]0.63581517-20.09-1.1540
MIMAT0003734mmu-miR-66721968Tom1gaacccgacccaccGUCCACAGu |||||||| aacaucucacugccCAGGUGUCa210508530[mm9:8:77593811-77593833:+]0.54481457-19.06-0.3090
MIMAT0015219mmu-miR-347521968Tom1aaguuUGGUACACGGAGGUCu :|: ||| ||||||| uccuuGCUCUGUACCUCCAGc217594614[mm9:8:77593897-77593917:+]0.54481567-18.74-0.1628
MIMAT0015219mmu-miR-347521968Tom1aaguuuGGUACAC---GGAGGUCu ||| | | ||||||| agaaucCCACGGGAGCCCUCCAGa216317340[mm9:8:77593620-77593643:+]0.52611427-19.51-0.2025
MIMAT0004189mmu-miR-693-3p21968Tom1aaugucggugUAGACUUUCGACg :| | ||||||| cccucccuugGUAUUAAAGCUGc2146183[mm9:8:77593364-77593386:+]0.47231457-15.72-0.3149
MIMAT0003502mmu-miR-71221968Tom1ccauggcgggcccACUUCCUc ||||||| caagggggucaacUGAAGGAa29132152[mm9:8:77593435-77593455:+]0.44821407-13.36-0.1355
MIMAT0007871mmu-miR-189221968Tom1uaggAGGGAGGGC--AGGGGUUUa | |||:::| |||||||| gaggUGCCUUUUGUAUCCCCAAAu219667690[mm9:8:77593970-77593993:+]0.63581577-23.14-1.1576
MIMAT0009397mmu-miR-1933-3p21968Tom1uaucagUGUGACU-ACCAGGACc |: |||: |||||||| acuggaAUCCUGGCUGGUCCUGc217167189[mm9:8:77593470-77593492:+]0.53921557-20.41-0.2810
MIMAT0009404mmu-miR-194021968Tom1uugacgaggUGGAAGAGUC-AGGAGGUa | || | ||| ||||||| gguacccagAGCUCCCCAGUUCCUCCAc219553580[mm9:8:77593856-77593883:+]0.54481577-23.70-0.2368
MIMAT0009404mmu-miR-194021968Tom1uuGACGAGGU-GGAA-GAGUCA-GGAGGUa :| | |:| |||| ||| || |||||| cuUUCCCCUAUCCUUGCUCUGUACCUCCAg226584613[mm9:8:77593887-77593916:+]0.54481396-25.44-0.1343
MIMAT0009408mmu-miR-194321968Tom1aggUCCACGGGUCUAGGAGG-GAa || | ||||| |||||| || cagAGCUCCCCAGUUCCUCCACUg221559582[mm9:8:77593862-77593885:+]0.54481400-24.82-0.2037
MIMAT0009424mmu-miR-195321968Tom1gucuucggacucuuGAAAGGGu ||||||| aguuccuccacugcCUUUCCCc29570591[mm9:8:77593873-77593894:+]0.54481407-12.94-0.2202
MIMAT0009428mmu-miR-195621968Tom1aggCGAC-UGAGUCGGGACC-UGa |||| | | |:||||| || ugaGCUGCCCACUGUCCUGGUACg220465488[mm9:8:77593768-77593791:+]0.54481220-21.35-0.3856
MIMAT0011211mmu-miR-213521968Tom1caaagccgggGUUCUGGAGa ::||||||| ggugucaagaUGAGACCUCg211524543[mm9:8:77593827-77593846:+]0.54481427-16.13-0.2154
MIMAT0011216mmu-miR-214021968Tom1ugGUGGUUCUAGACGUGGa :|| || | ||||||| ggUACGAA-A-CUGCACCc218483499[mm9:8:77593786-77593802:+]0.54481457-14.79-0.4137
MIMAT0000134mmu-miR-12421968Tom1ccguaaguggcgCACGGAAu ||||||| guacagggagagGUGCCUUu29658677[mm9:8:77593961-77593980:+]0.63581407-12.82-0.7036
MIMAT0000151mmu-miR-14021968Tom1gaUGGUAUCCCAUUUUGGUGac |: | || |||||||| aaAUAAAAGUAGAAAACCACc-321687707[mm9:8:77593990-77594010:+]0.63581360-10.91-0.1480
MIMAT0000381mmu-miR-34c21968Tom1cguuaGUCGAUUGAUGUGACGGa |||:| || ||||||| cucccCAGUU-CCUCCACUGCCu219564585[mm9:8:77593867-77593888:+]0.54481567-21.02-0.3201
MIMAT0000381mmu-miR-34c21968Tom1cguUAG-UCGAUUG-A-UGUGACGGa ||| || ||| | ||||||| cccAUCGAGGAAACAUCUCACUGCCc221497522[mm9:8:77593800-77593825:+]0.54481497-16.37-0.4171
MIMAT0000382mmu-miR-34b-5p21968Tom1uguuaGUCGAUUAAUGUGACGGa |||:| | ||||||| cucccCAGUU-CCUCCACUGCCu219564585[mm9:8:77593867-77593888:+]0.54481487-18.90-0.3201
MIMAT0000382mmu-miR-34b-5p21968Tom1uguUAG-UCGAU--UAAUGUGACGGa ||| || | || ||||||| cccAUCGAGGAAACAUCUCACUGCCc221497522[mm9:8:77593800-77593825:+]0.54481467-13.68-0.4171
MIMAT0000542mmu-miR-34a21968Tom1uguuGGUCGAUUCUGUGACGGu ||||:| ||||||| cuccCCAGUUCCUCCACUGCCu219564585[mm9:8:77593867-77593888:+]0.54481547-20.90-0.3147
MIMAT0000542mmu-miR-34a21968Tom1ugUUGGUCGAUUCU---GUGACGGu | | || || | ||||||| ccAUCGAGGAAACAUCUCACUGCCc221498522[mm9:8:77593801-77593825:+]0.54481437-15.00-0.4171
MIMAT0000559mmu-miR-32621968Tom1ugACCUCCU---UCCC--GGGUCUCc | ||||| ||| ||||||| ccUCGAGGAUUCUGGGUACCCAGAGc220539564[mm9:8:77593842-77593867:+]0.54481497-26.77-0.1302
MIMAT0000559mmu-miR-32621968Tom1ugaccuccuucccGGGUCUCc ||||||| ccgcuucucuucuCCCAGAGc29103123[mm9:8:77593406-77593426:+]0.39781407-13.30-0.1058
MIMAT0000559mmu-miR-32621968Tom1ugaccuccuucccGGGUCUCc ||||||| cccuggucccuucCCCAGAGa29299319[mm9:8:77593602-77593622:+]0.52611407-18.83-0.1892
MIMAT0004642mmu-miR-33021968Tom1cgGAUUCUGUGUCC---GGGUCUCu | |:||: | || ||||||| cuCGAGGAUUCUGGGUACCCAGAGc221540564[mm9:8:77593843-77593867:+]0.54481517-20.37-0.1328
MIMAT0004642mmu-miR-33021968Tom1cgGAUUCUGUGUCCGGGUCUCu || :| | | ||||||| ccCU-GGUCCCUUCCCCAGAGa221299319[mm9:8:77593602-77593622:+]0.52611427-21.26-0.1874
MIMAT0004642mmu-miR-33021968Tom1cggauucuguguccGGGUCUCu ||||||| cccgcuucucuucuCCCAGAGc29102123[mm9:8:77593405-77593426:+]0.39781407-16.94-0.1027
MIMAT0000661mmu-miR-21421968Tom1ugaCGG-ACAGACACGGACGACa ||: || : | ||||||| uggGCUAUGGUGGCCCCUGCUGa220445467[mm9:8:77593748-77593770:+]0.54761467-18.44-0.1303
MIMAT0001542mmu-miR-449a21968Tom1uggUCGAUUGUUAUGUGACGGu || |||| ||||||| ucgAGGAAACAUCUCACUGCCc220501522[mm9:8:77593804-77593825:+]0.54481557-18.78-0.4077
MIMAT0001542mmu-miR-449a21968Tom1ugGUCGAUUGUUAUGUGACGGu |||:| | | ||||||| ccCAGUU--C-CUCCACUGCCu221567585[mm9:8:77593870-77593888:+]0.54481437-19.16-0.3227
MIMAT0003130mmu-miR-48621968Tom1gagccccgucGAGU-CAUGUCCu |||| ||||||| uugauuggucCUCAGGUACAGGg213643665[mm9:8:77593946-77593968:+]0.59031517-21.88-0.2286
MIMAT0003893mmu-miR-76121968Tom1acacaGUCAAAGUGGGACGACg ::|| | |||||||| ggcuaUGGUGGC-CCCUGCUGa218447467[mm9:8:77593750-77593770:+]0.54761477-20.37-0.1316
MIMAT0003460mmu-miR-449c21968Tom1ggUCGAUCGUUACGUGACGGa || | || ||||||| cgAGGAAACAUCUCACUGCCc220502522[mm9:8:77593805-77593825:+]0.54481477-13.98-0.4139
MIMAT0003460mmu-miR-449c21968Tom1ggucgaucguuACGUGACGGa | ||||||| uccccaguuccUCCACUGCCu211565585[mm9:8:77593868-77593888:+]0.54481427-21.00-0.3201
MIMAT0003486mmu-miR-49121968Tom1ggaguaccuuccCA-AGGGGUga || |||||| gaggugccuuuuGUAUCCCCAaa311667689[mm9:8:77593970-77593992:+]0.63581210-14.44-0.1176
MIMAT0004855mmu-miR-876-3p21968Tom1acUUA-AUGAAACAUUUGGUGau ||| | | | ||||||| caAAUAAAAGUAGAAAACCACc-321686707[mm9:8:77593989-77594010:+]0.63581310-8.46-0.1494
MIMAT0005447mmu-miR-449b21968Tom1cggUCGAUUGU--UGUGACGGa || |||| ||||||| ucgAGGAAACAUCUCACUGCCc218501522[mm9:8:77593804-77593825:+]0.54481487-18.95-0.4171
MIMAT0005447mmu-miR-449b21968Tom1cgGUCGAUUGUUGUGACGGa |||:| | ||||||| ccCAGUU-CCUCCACUGCCu219567585[mm9:8:77593870-77593888:+]0.54481487-23.11-0.3201
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G045402Tom1Mus musculus21968
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
Tom1mmu-miR-667beg:514end:531pic:3' GAACCCGACCCACCGTCCACAGT 5'& ||| ||||||||| &5' ------CTGCC---CAGGTGTCA 3'
Tom1mmu-miR-34abeg:507end:522pic:3' TGTTGGTCGATTCTGTGACGGT 5'& || || ||||||| &5' -----CATCT----CACTGCC- 3'
Tom1mmu-miR-449cbeg:507end:522pic:3' GGTCGATCGTTACGTGACGGA 5'& || ||||||| &5' --------CATCTCACTGCC- 3'
Tom1mmu-miR-34cbeg:510end:522pic:3' CGTTAGTCGATTGATGTGACGGA 5'& || ||||||| &5' ------------CT-CACTGCC- 3'
Tom1mmu-miR-34b-5pbeg:512end:522pic:3' TGTTAGTCGATTAATGTGACGGA 5'& ||||||| &5' ---------------CACTGCC- 3'
Tom1mmu-miR-34b-5pbeg:566end:586pic:3' TGTTAGTCGATTAATGTGACGGA 5'& |||.| |||||||| &5' -----CAGTTCCTC-CACTGCCT 3'
Tom1mmu-miR-34cbeg:566end:586pic:3' CGTTAGTCGATTGATGTGACGGA 5'& |||.| || |||||||| &5' -----CAGTTC-CTCCACTGCCT 3'
Tom1mmu-miR-370beg:600end:618pic:3' TGGTCCAAGGTGG-GGTCGTCCG 5'& | .||| |||||||| &5' -------TGTACCTCCAGCAGG- 3'
Tom1mmu-miR-1892beg:671end:691pic:3' TAGGAGGGAGGGC--AGGGGTTTA 5'& |||...| ||||||||| &5' ------CCTTTTGTATCCCCAAAT 3'
Tom1mmu-miR-3475beg:328end:341pic:3' AAGTTTGGTACAC-GGAGGTCT 5'& | |||||||| &5' ------------GCCCTCCAGA 3'
Tom1mmu-miR-1943beg:47end:70pic:3' AGGTCCACGGGTCTAGGAGGGAA 5'& | || |||| |||||||| &5' -CTGGG-GCCCCTC-CCTCCCTT 3'
Tom1mmu-miR-761beg:450end:467pic:3' ACACAGTCAAAGTGGGACGACG 5'& .|| | |||||||| &5' ------GGTGGC-CCCTGCTG- 3'
Tom1mmu-miR-421beg:631end:648pic:3' CGCGGGTTAATTACAGACAACTA 5'& ||.|| |||||||| &5' --GCTCAC-------CTGTTGAT 3'
Tom1mmu-miR-1953beg:577end:591pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||| ||||||| &5' -------CTGC---CTTTCCC- 3'
Tom1mmu-miR-423-5pbeg:52end:62pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& ||||||| &5' ---------------GCCCCTC- 3'
Tom1mmu-miR-296-5pbeg:221end:239pic:3' TGTCCTAACTCCC--CCCCGGGA 5'& |||| ||||||| &5' -------TGAGACCTGGGGCCC- 3'
Tom1mmu-miR-296-5pbeg:405end:419pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||| ||||||| &5' --------GAGT-GGGGCCC- 3'
Tom1mmu-miR-296-5pbeg:49end:59pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||||||| &5' -------------GGGGCCC- 3'
Tom1mmu-miR-1933-3pbeg:173end:189pic:3' TATCAGTGTGACT-ACCAGGACC 5'& |||. |||||||| &5' ---------CTGGCTGGTCCTG- 3'
Tom1mmu-miR-486beg:646end:665pic:3' GAGCCCCGTCGAGT-CATGTCCT 5'& ||. |||| |||||||. &5' -----GGTC-CTCAGGTACAGGG 3'
Tom1mmu-miR-1224beg:644end:657pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& . ||||||| &5' ----------TTGGTCCTCA- 3'
Tom1mcmv-miR-m01-1beg:94end:116pic:3' GGCAA-GCTGCAATAAGAGGAGA 5'& .||| | || |||||.||| &5' -TGTTACCCCGC--TTCTCTTCT 3'
Tom1mcmv-miR-m01-2beg:94end:115pic:3' TGGCAAGGTTGGGCTAAGAGAAG 5'& ..||| |||| |||||||| &5' -TTGTTAC--CCCGCTTCTCTTC 3'
Tom1mcmv-miR-m21-1beg:584end:595pic:3' GCCGAACTTGCACAGGGGATA 5'& |||||||| &5' -------------TCCCCTAT 3'
Tom1mcmv-miR-m21-1beg:287end:304pic:3' GCCGAACTTGCAC----AGGGGATA 5'& ||| ||||||. &5' ----------GTGATATTCCCCTG- 3'
Tom1mcmv-miR-M23-2beg:592end:613pic:3' GGCGAACT-GGCTCCGGGGGTA 5'& | |||| |.| ||.||| &5' -C-CTTGCTCTGTA-CCTCCA- 3'
Tom1mcmv-miR-M87-1beg:268end:288pic:3' CGACGGCGACGGCTGCCGACGGA 5'& |.| ||. ||||||.| &5' ----CTGGTGTAA--GGCTGCTT 3'
Tom1mghv-miR-M1-3beg:631end:642pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& |||||||| &5' -------------GCTCACCT- 3'
Tom1mmu-let-7bbeg:564end:587pic:3' TTGGTGTGTTGGA--TGATGGAGT 5'& || || ||| |||.|||. &5' --CC-CAGTTCCTCCACTGCCTT- 3'
Tom1mmu-let-7bbeg:19end:44pic:3' TTGGTGTGTTGGATGATG-GAGT 5'& |.|| || ..|||. || |||| &5' AGCC-CAGGGCCTGACACTCTCA 3'
Tom1mmu-let-7dbeg:568end:588pic:3' TTGATACGTTGGA--TGATGGAGA 5'& |. ||| |||.|||.| &5' ------GTT-CCTCCACTGCCTTT 3'
Tom1mmu-miR-1188beg:26end:48pic:3' AGGACCGGGTTG---GAGTGTGGT 5'& |||| || ||||.||| &5' ----GGCCTGACACTCTCATACC- 3'
Tom1mmu-miR-1188beg:328end:351pic:3' AGGAC-CGGG----TTGGAGTGTGGT 5'& | |||| .|| .||||.| &5' ----GAGCCCTCCAGACTCTACACTA 3'
Tom1mmu-miR-1191beg:270end:285pic:3' ATCCCGATGTATCATTCTGAC 5'& ||. |||||.||| &5' ---GGT------GTAAGGCTG 3'
Tom1mmu-miR-125a-3pbeg:621end:644pic:3' CCGAGGGTT--CTTGGAGTGGACA 5'& |||| |.. ||||||||| &5' ----CCCACCTGGGGCTCACCTGT 3'
Tom1mmu-miR-137beg:345end:367pic:3' GATGCGCATAAGAATTCGTTATT 5'& ||| || ||.||||||. &5' CTAACAG---TC-TAGGCAATAG 3'
Tom1mmu-miR-142-3pbeg:353end:379pic:3' AGGTATT---TCATCCTTTGTGATGT 5'& ||.| || ||||.|||.||| &5' TCTAGGCAATAG-AGGAGACATTAC- 3'
Tom1mmu-miR-146bstarbeg:219end:237pic:3' TGGTCTTGACTCAGGGATCCCG 5'& |||||| |||.|||| &5' ------ACTGAGA-CCTGGGGC 3'
Tom1mmu-miR-1892beg:294end:318pic:3' TAGGAGGG--AGGGCAGGGGTTTA 5'& ||| ||. |||| ||||||.| &5' -TCC-CCTGGTCCCTTCCCCAGA- 3'
Tom1mmu-miR-1894-3pbeg:54end:71pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& |||| || |||||||| &5' --CCCT----CC-CTCCCTTG- 3'
Tom1mmu-miR-1896beg:297end:320pic:3' GAGGAGT-GGGT-GGTAGTCTCTC 5'& ||| . ||| || |||||| &5' --CCTGGTCCCTTCCC-CAGAGA- 3'
Tom1mmu-miR-1897-5pbeg:98end:123pic:3' GGGGGAGAA-AGAGGTAGGTTTC 5'& |||| ||| |||.| |||.|| &5' -CCCCGCTTCTCTTCTCCCAGAG 3'
Tom1mmu-miR-1902beg:591end:611pic:3' TTCAGT-ACGGATGACGTGGAGA 5'& || |||. |||.||||| &5' ---TCCTTGCT--CTGTACCTC- 3'
Tom1mmu-miR-1937abeg:431end:446pic:3' ACCCCCGAGCAGGCCCTAA 5'& |||| |..||||| &5' ----GGCT--TTTGGGAT- 3'
Tom1mmu-miR-1940beg:560end:580pic:3' TTGACGAGGTGGAAGAGTC-AGGAGGTA 5'& ||||| || || ||||||| &5' ----GCTCC-CC-----AGTTCCTCCA- 3'
Tom1mmu-miR-1940beg:154end:168pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& |||| |||||| &5' ---------------TCAGCCCTCCA- 3'
Tom1mmu-miR-1949beg:259end:279pic:3' TTGATACGACTGTAGGACCATATC 5'& ||| .||| ||||||.|| &5' --CTAA-TTGA---CCTGGTGTA- 3'
Tom1mmu-miR-1955beg:615end:637pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& ..||| || || ||||||.|| &5' --GGGCTCCACC-CA-CCTGGGGCT 3'
Tom1mmu-miR-1959beg:572end:592pic:3' GAGGTGACTCGATGTAGGGG 5'& |||||||| || ||||| &5' CTCCACTGC-CTT--TCCCC 3'
Tom1mmu-miR-1961beg:576end:587pic:3' AAGATTGATGATGGAGT 5'& |||.|||. &5' --------ACTGCCTT- 3'
Tom1mmu-miR-2135beg:522end:543pic:3' CAAAGCCGGGGT-----TCTGGAGA 5'& ||. .|| ||||||| &5' -----GGTGTCAAGATGAGACCTC- 3'
Tom1mmu-miR-2140beg:587end:610pic:3' TGGT--GGTTCTAGACGTGGA 5'& || || | ||||.|||| &5' -CCTATCCTTGCTCTGTACCT 3'
Tom1mmu-miR-2140beg:478end:499pic:3' TGGTGGTTCTA-GACGTGGA 5'& |.. .| || ||||||| &5' -CTGGTACGAAACTGCACC- 3'
Tom1mmu-miR-2145beg:19end:42pic:3' TTGG--TCCGGGCTGGGACGA 5'& |.|| .||||.||| || || &5' AGCCCAGGGCCTGACACT-CT 3'
Tom1mmu-miR-2146beg:45end:63pic:3' GTGTACCTTGGGAAGAGGTG 5'& ||| |||..||| |||| &5' CAC-TGGGGCCC--CTCC-- 3'
Tom1mmu-miR-27abeg:277end:294pic:3' CGCCTTGAATCGGTGACACTT 5'& ..|| ||. |||||| &5' ----GGCT--GCTTCTGTGA- 3'
Tom1mmu-miR-296-5pbeg:628end:638pic:3' TGTCCTAACTCCCCCCCGGGA 5'& |||||.| &5' -------------GGGGCTC- 3'
Tom1mmu-miR-30astarbeg:128end:151pic:3' CGACGTTTGTA-GGCTGACTTTC 5'& ||||. . .| ||||||.| &5' ---GCAAGGGGGTCAACTGAAGG 3'
Tom1mmu-miR-30astarbeg:153end:174pic:3' CGACGTTTGT-AGGCTGACTTTC 5'& |. |.| ||| ||||.|| &5' ---GTCAGCCCTCC-ACTGGAA- 3'
Tom1mmu-miR-30c-1starbeg:107end:121pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& .|.|||||||| &5' -----------TCTTCTCCCAG 3'
Tom1mmu-miR-30c-2starbeg:107end:121pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& .|||||||||| &5' -----------TCTTCTCCCAG 3'
Tom1mmu-miR-30estarbeg:153end:174pic:3' CGACATTTGT-AGGCTGACTTTC 5'& || |.| ||| ||||.|| &5' ---GTCAGCCCTCC-ACTGGAA- 3'
Tom1mmu-miR-326beg:298end:319pic:3' TGACCTCCTTCCCGGGTCTCC 5'& |||| ||||||| &5' -CTGGTCCCTTC-CCCAGAG- 3'
Tom1mmu-miR-326beg:542end:564pic:3' TGACCTCCTT---CCC--GGGTCTCC 5'& ||||| ||| ||||||| &5' ----GAGGATTCTGGGTACCCAGAG- 3'
Tom1mmu-miR-327beg:645end:660pic:3' TAGGAGTACGGGGAGTTCA 5'& || .|||||.|| &5' -------TGGTCCTCAGGT 3'
Tom1mmu-miR-327beg:570end:589pic:3' TAGGAGT--ACGGGGAGTTCA 5'& ||||| ||||..|| &5' -TCCTCCACTGCCTTTC---- 3'
Tom1mmu-miR-330beg:297end:320pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& |||.. | | |||||||| &5' -CCTGGTCC-CTTCCCCAGAGA 3'
Tom1mmu-miR-339-5pbeg:646end:667pic:3' GCACTCGAGGACCTCC-TGTCCCT 5'& | |||| ||| ||||||| &5' -----GGTCCTC-AGGTACAGGGA 3'
Tom1mmu-miR-343beg:654end:669pic:3' AGACCCGTGTACTTCCCTCT 5'& ||.|| ||||||| &5' ----GGTAC----AGGGAGA 3'
Tom1mmu-miR-3470bbeg:392end:414pic:3' GGTCGGACCAGATGTCTCACT 5'& ||| || ||.|||||||. &5' CCATCCCC--CTGCAGAGTGG 3'
Tom1mmu-miR-3475beg:593end:614pic:3' AAGTTTGGTACACGGAGGTCT 5'& | .|. ||| ||||||| &5' --CTTGCTCTGTACCTCCAG- 3'
Tom1mmu-miR-34abeg:457end:481pic:3' TGTTGGTCGATTCT----GTGACGGT 5'& || |||.|| |||||.| &5' ----CCTGCTGAGCTGCCCACTGTC- 3'
Tom1mmu-miR-34abeg:565end:585pic:3' TGTTGGTCGATTCTGTGACGGT 5'& ||||.| ||||||| &5' ----CCAGTTCCTCCACTGCC- 3'
Tom1mmu-miR-376bbeg:277end:295pic:3' TTCACCTACAAGGAGATACTA 5'& || || |.|||.|||| &5' ----GGCTG--CTTCTGTGAT 3'
Tom1mmu-miR-378beg:339end:360pic:3' GGAAGACTGAGGT-------TCAGGTCA 5'& ||||.| ||||.|| &5' -------ACTCTACACTAACAGTCTAG- 3'
Tom1mmu-miR-381beg:661end:683pic:3' TGTCTCTCGAACGG-GAACATAT 5'& .||||| |||| .|||||| &5' --GGAGAGG-TGCCTTTTGTAT- 3'
Tom1mmu-miR-423-5pbeg:567end:589pic:3' TTTCAGAGCGAGA-GACGGGGAGT 5'& || .|| ||| |||||..|| &5' --AG-TTC-CTCCACTGCCTTTC- 3'
Tom1mmu-miR-449abeg:501end:522pic:3' TGGTCGATTGTTATGTGACGGT 5'& | || |||| ||||||| &5' -CGAGGAAACATCTCACTGCC- 3'
Tom1mmu-miR-449abeg:565end:585pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||||.| ||||||| &5' -CCAGTTCCTC---CACTGCC- 3'
Tom1mmu-miR-449abeg:464end:481pic:3' TGGTCGATTGTTATGTGACGGT 5'& |||| .| |||||.| &5' ---AGCT-GCC---CACTGTC- 3'
Tom1mmu-miR-449bbeg:565end:586pic:3' CGGTCGATTGTTGTGACGGA 5'& ||||.| | |||||||| &5' -CCAGTTC-CTCCACTGCCT 3'
Tom1mmu-miR-449bbeg:499end:522pic:3' CGGTCGATTGTT--GTGACGGA 5'& | || |||| ||||||| &5' -CGAGGAAACATCTCACTGCC- 3'
Tom1mmu-miR-449cbeg:565end:586pic:3' GGTCGATCGTTACGTGACGGA 5'& ||||.| |||||||| &5' CCAGTTCCTC---CACTGCCT 3'
Tom1mmu-miR-450a-3pbeg:556end:573pic:3' TACTTACGTTTCGTAGGGGTTA 5'& ||.||| ||||||.| &5' -------CAGAGC-TCCCCAGT 3'
Tom1mmu-miR-450a-3pbeg:667end:689pic:3' TACTTACGTTT--CGTAGGGGTTA 5'& ..||| |.|||||||| &5' ---GGTGCCTTTTGTATCCCCAA- 3'
Tom1mmu-miR-465a-3pbeg:296end:307pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.|| &5' --------------CCCTGGTC 3'
Tom1mmu-miR-465b-3pbeg:296end:307pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.|| &5' --------------CCCTGGTC 3'
Tom1mmu-miR-465c-3pbeg:296end:307pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.|| &5' --------------CCCTGGTC 3'
Tom1mmu-miR-470beg:510end:534pic:3' TGAGTGGTCACGGTCA--GGTTCTT 5'& |||||.. |||| .||||| &5' -CTCACTGC--CCAGGTGTCAAGA- 3'
Tom1mmu-miR-484beg:25end:36pic:3' TAGCCCTCCCCTGACTCGGACT 5'& |.|||||| &5' --------------GGGCCTGA 3'
Tom1mmu-miR-544beg:401end:412pic:3' CTCGAACGATTTTTACGTCTTA 5'& ||||||.| &5' --------------TGCAGAGT 3'
Tom1mmu-miR-666-3pbeg:4end:26pic:3' TCGTCCGCTA-GTGCGACGTCGG 5'& .||. ||. |||||||| &5' ---GGGTCTGGCATCCTGCAGCC 3'
Tom1mmu-miR-667beg:76end:95pic:3' GAACCCGACCCACCGTCCACAGT 5'& |||| ||| .|||||. &5' -----GCTGCTTGG-GGGTGTT- 3'
Tom1mmu-miR-675-5pbeg:480end:499pic:3' TGACACCCGGGAAA-GGCGTGGT 5'& || | |.||||| &5' ------GGTACGAAACTGCACC- 3'
Tom1mmu-miR-682beg:476end:497pic:3' GTCTGAAGTGACAC-----TGACGTC 5'& || ||| |||||| &5' ------TC-CTGGTACGAAACTGCA- 3'
Tom1mmu-miR-693-3pbeg:267end:286pic:3' AATGTCGGTGTAGACTTTCGACG 5'& || .| | ||.||||| &5' ------CCTGGTGT-AAGGCTGC 3'
Tom1mmu-miR-693-3pbeg:63end:84pic:3' AATGTCGGTG-TAGACTTTCGACG 5'& || .| |||||||| &5' ------CCTTGGTATTAAAGCTGC 3'
Tom1mmu-miR-709beg:171end:194pic:3' AGGAGGACGGA----GACGGAGG 5'& ||||| || ||||||.| &5' ---TCCTGGCTGGTCCTGCCTTC 3'
Tom1mmu-miR-742beg:422end:441pic:3' AAATGGGTCGTAC-CACCGAAAG 5'& ||| ||||||||. &5' -------AGCTTCAGTGGCTTTT 3'
Tom1mmu-miR-744starbeg:117end:134pic:3' TCCAACTCCAATCACCGTTGTC 5'& ||| ||||.|| &5' -----GAGCCTG--GGCAGCA- 3'
Tom1mmu-miR-744starbeg:356end:367pic:3' TCCAACTCCAATCACCGTTGTC 5'& |||||.|| &5' --------------GGCAATAG 3'
Tom1mmu-miR-760beg:105end:125pic:3' AGGGGTGTCTGGGTCTCGGC 5'& ||.|. | ||||||||| &5' TCTCTTCT--CCCAGAGCC- 3'
Tom1mmu-miR-760beg:13end:33pic:3' AGGGGTGTCTGGGTCTCGGC 5'& .|| ||| |||||.||| &5' -TCCTGCAG-CCCAGGGCC- 3'
Tom1mmu-miR-767beg:256end:279pic:3' ACGAGTCTG------TTGGTACCACGT 5'& .||| .||| |||||.| &5' -----GGACCTAATTGACC-TGGTGTA 3'
Tom1mmu-miR-770-3pbeg:618end:640pic:3' GGTCGAGGTGCAGTCCGGGTGC 5'& ||| | |||| | .|||.||| &5' CCA-C-CCACCTGGGGCTCAC- 3'
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Tom1RAID00054391mmu-miR-34c-5pmiRNAMIMAT0000381Tom1mRNA21968Prediction0.2202
Tom1RAID00117830mmu-miR-7051-5pmiRNAMIMAT0028006Tom1mRNA21968Prediction0.1828
Tom1RAID00206799mmu-miR-1892miRNAMIMAT0007871Tom1mRNA21968Prediction0.1828
Tom1RAID00223167mmu-miR-34a-5pmiRNAMIMAT0000542Tom1mRNA21968Prediction0.2202
Tom1RAID00223451mmu-miR-34b-5pmiRNAMIMAT0000382Tom1mRNA21968Prediction0.2202
Tom1RAID00378206mmu-miR-7005-5pmiRNAMIMAT0027914Tom1mRNA21968Prediction0.1828
Tom1RAID00392208mmu-miR-450a-2-3pmiRNAMIMAT0004789Tom1mRNA21968Prediction0.1828
Tom1RAID00464523mmu-miR-449a-5pmiRNAMIMAT0001542Tom1mRNA21968Prediction0.2202
Tom1RAID00557349mmu-miR-149-3pmiRNAMIMAT0016990Tom1mRNA21968Prediction0.1828
Tom1RAID00758425mmu-miR-6965-5pmiRNAMIMAT0027830Tom1mRNA21968Prediction0.1828
Tom1RAID00873131mmu-miR-194-1-3pmiRNAMIMAT0016999Tom1mRNA21968Prediction0.1828
Tom1RAID01234004mmu-miR-7067-5pmiRNAMIMAT0028038Tom1mRNA21968Prediction0.1828
Tom1RAID01258487mmu-miR-7235-5pmiRNAMIMAT0028438Tom1mRNA21968Prediction0.1828
Tom1RAID01278538mmu-miR-7242-3pmiRNAMIMAT0028453Tom1mRNA21968Prediction0.1828
Tom1RAID01307545mmu-miR-667-3pmiRNAMIMAT0003734Tom1mRNA21968Prediction0.1828
Tom1RAID01412538mmu-miR-124-3pmiRNAMIMAT0000134Tom1mRNA21968Prediction0.2381
Tom1RAID01458589mmu-miR-6975-5pmiRNAMIMAT0027852Tom1mRNA21968Prediction0.1828
Tom1RAID01489085mmu-miR-6967-5pmiRNAMIMAT0027836Tom1mRNA21968Prediction0.1828
Tom1RAID01581604mmu-miR-7047-5pmiRNAMIMAT0027998Tom1mRNA21968Prediction0.1828
Tom1RAID01689001mmu-miR-8108miRNAMIMAT0031413Tom1mRNA21968Prediction0.1828
Tom1RAID01712238mmu-miR-449c-5pmiRNAMIMAT0003460Tom1mRNA21968Prediction0.2381
Tom1RAID01742302mmu-miR-3103-5pmiRNAMIMAT0014937Tom1mRNA21968Prediction0.1828
Tom1RAID01769664mmu-miR-6348miRNAMIMAT0025091Tom1mRNA21968Prediction0.1828
Tom1RAID01866119mmu-miR-7010-5pmiRNAMIMAT0027924Tom1mRNA21968Prediction0.1828
Tom1RAID01924773mmu-miR-194-2-3pmiRNAMIMAT0017073Tom1mRNA21968Prediction0.1828
Tom1RAID02073438mmu-miR-140-5pmiRNAMIMAT0000151Tom1mRNA21968Prediction0.1828
Tom1RAID02078295mmu-miR-7056-5pmiRNAMIMAT0028016Tom1mRNA21968Prediction0.1828
Tom1RAID02297036mmu-miR-330-5pmiRNAMIMAT0004642Tom1mRNA21968Prediction0.2381
Tom1RAID02376619mmu-miR-7055-5pmiRNAMIMAT0028014Tom1mRNA21968Prediction0.1828
Tom1RAID02388318mmu-miR-6982-5pmiRNAMIMAT0027866Tom1mRNA21968Prediction0.1828
Tom1RAID02424576mmu-miR-7222-3pmiRNAMIMAT0028413Tom1mRNA21968Prediction0.1828
Tom1RAID02443523mmu-miR-761miRNAMIMAT0003893Tom1mRNA21968Prediction0.1828
Tom1RAID02591490mmu-miR-7683-3pmiRNAMIMAT0029887Tom1mRNA21968Prediction0.1828
Tom1RAID02681751mmu-miR-1943-5pmiRNAMIMAT0009408Tom1mRNA21968Prediction0.1828
Tom1RAID02701848mmu-miR-7027-5pmiRNAMIMAT0027958Tom1mRNA21968Prediction0.1828
Tom1RAID02792409mmu-miR-5623-5pmiRNAMIMAT0022373Tom1mRNA21968Prediction0.1828
Tom1RAID02803071mmu-miR-486a-5pmiRNAMIMAT0003130Tom1mRNA21968Prediction0.1828
Tom1RAID02813580mmu-miR-7074-5pmiRNAMIMAT0028054Tom1mRNA21968Prediction0.1828
Tom1RAID02850664mmu-miR-296-5pmiRNAMIMAT0000374Tom1mRNA21968Prediction0.1828
Tom1RAID02926621mmu-miR-7676-5pmiRNAMIMAT0029860Tom1mRNA21968Prediction0.1828
Tom1RAID02969711mmu-miR-491-5pmiRNAMIMAT0003486Tom1mRNA21968Prediction0.1828
Tom1RAID02996804mmu-miR-214-3pmiRNAMIMAT0000661Tom1mRNA21968Prediction0.1828
Tom1RAID03077155mmu-miR-7214-5pmiRNAMIMAT0028396Tom1mRNA21968Prediction0.1828
Tom1RAID03087127mmu-miR-6926-5pmiRNAMIMAT0027752Tom1mRNA21968Prediction0.1828
Tom1RAID03172914mmu-miR-3552miRNAMIMAT0035715Tom1mRNA21968Prediction0.1828
Tom1RAID03294021mmu-miR-874-5pmiRNAMIMAT0017268Tom1mRNA21968Prediction0.1828
Tom1RAID03571926mmu-miR-7016-5pmiRNAMIMAT0027936Tom1mRNA21968Prediction0.1828
Tom1RAID03573705mmu-miR-449bmiRNAMIMAT0005447Tom1mRNA21968Prediction0.2202
Tom1RAID03587176mmu-miR-876-3pmiRNAMIMAT0004855Tom1mRNA21968Prediction0.1828
Tom1RAID03791843mmu-miR-8100miRNAMIMAT0031403Tom1mRNA21968Prediction0.1828
Tom1RAID04004722mmu-miR-326-3pmiRNAMIMAT0000559Tom1mRNA21968Prediction0.2202
Tom1RAID04031078mmu-miR-484miRNAMIMAT0003127Tom1mRNA21968Prediction0.1828