DNA & RNA Element - RepTar |
Gene Name | miRNA | Begin | End | Profile |
Tom1 | mmu-miR-667 | beg:514 | end:531 | pic:3' GAACCCGACCCACCGTCCACAGT 5'& ||| ||||||||| &5' ------CTGCC---CAGGTGTCA 3' |
Tom1 | mmu-miR-34a | beg:507 | end:522 | pic:3' TGTTGGTCGATTCTGTGACGGT 5'& || || ||||||| &5' -----CATCT----CACTGCC- 3' |
Tom1 | mmu-miR-449c | beg:507 | end:522 | pic:3' GGTCGATCGTTACGTGACGGA 5'& || ||||||| &5' --------CATCTCACTGCC- 3' |
Tom1 | mmu-miR-34c | beg:510 | end:522 | pic:3' CGTTAGTCGATTGATGTGACGGA 5'& || ||||||| &5' ------------CT-CACTGCC- 3' |
Tom1 | mmu-miR-34b-5p | beg:512 | end:522 | pic:3' TGTTAGTCGATTAATGTGACGGA 5'& ||||||| &5' ---------------CACTGCC- 3' |
Tom1 | mmu-miR-34b-5p | beg:566 | end:586 | pic:3' TGTTAGTCGATTAATGTGACGGA 5'& |||.| |||||||| &5' -----CAGTTCCTC-CACTGCCT 3' |
Tom1 | mmu-miR-34c | beg:566 | end:586 | pic:3' CGTTAGTCGATTGATGTGACGGA 5'& |||.| || |||||||| &5' -----CAGTTC-CTCCACTGCCT 3' |
Tom1 | mmu-miR-370 | beg:600 | end:618 | pic:3' TGGTCCAAGGTGG-GGTCGTCCG 5'& | .||| |||||||| &5' -------TGTACCTCCAGCAGG- 3' |
Tom1 | mmu-miR-1892 | beg:671 | end:691 | pic:3' TAGGAGGGAGGGC--AGGGGTTTA 5'& |||...| ||||||||| &5' ------CCTTTTGTATCCCCAAAT 3' |
Tom1 | mmu-miR-3475 | beg:328 | end:341 | pic:3' AAGTTTGGTACAC-GGAGGTCT 5'& | |||||||| &5' ------------GCCCTCCAGA 3' |
Tom1 | mmu-miR-1943 | beg:47 | end:70 | pic:3' AGGTCCACGGGTCTAGGAGGGAA 5'& | || |||| |||||||| &5' -CTGGG-GCCCCTC-CCTCCCTT 3' |
Tom1 | mmu-miR-761 | beg:450 | end:467 | pic:3' ACACAGTCAAAGTGGGACGACG 5'& .|| | |||||||| &5' ------GGTGGC-CCCTGCTG- 3' |
Tom1 | mmu-miR-421 | beg:631 | end:648 | pic:3' CGCGGGTTAATTACAGACAACTA 5'& ||.|| |||||||| &5' --GCTCAC-------CTGTTGAT 3' |
Tom1 | mmu-miR-1953 | beg:577 | end:591 | pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||| ||||||| &5' -------CTGC---CTTTCCC- 3' |
Tom1 | mmu-miR-423-5p | beg:52 | end:62 | pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& ||||||| &5' ---------------GCCCCTC- 3' |
Tom1 | mmu-miR-296-5p | beg:221 | end:239 | pic:3' TGTCCTAACTCCC--CCCCGGGA 5'& |||| ||||||| &5' -------TGAGACCTGGGGCCC- 3' |
Tom1 | mmu-miR-296-5p | beg:405 | end:419 | pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||| ||||||| &5' --------GAGT-GGGGCCC- 3' |
Tom1 | mmu-miR-296-5p | beg:49 | end:59 | pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||||||| &5' -------------GGGGCCC- 3' |
Tom1 | mmu-miR-1933-3p | beg:173 | end:189 | pic:3' TATCAGTGTGACT-ACCAGGACC 5'& |||. |||||||| &5' ---------CTGGCTGGTCCTG- 3' |
Tom1 | mmu-miR-486 | beg:646 | end:665 | pic:3' GAGCCCCGTCGAGT-CATGTCCT 5'& ||. |||| |||||||. &5' -----GGTC-CTCAGGTACAGGG 3' |
Tom1 | mmu-miR-1224 | beg:644 | end:657 | pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& . ||||||| &5' ----------TTGGTCCTCA- 3' |
Tom1 | mcmv-miR-m01-1 | beg:94 | end:116 | pic:3' GGCAA-GCTGCAATAAGAGGAGA 5'& .||| | || |||||.||| &5' -TGTTACCCCGC--TTCTCTTCT 3' |
Tom1 | mcmv-miR-m01-2 | beg:94 | end:115 | pic:3' TGGCAAGGTTGGGCTAAGAGAAG 5'& ..||| |||| |||||||| &5' -TTGTTAC--CCCGCTTCTCTTC 3' |
Tom1 | mcmv-miR-m21-1 | beg:584 | end:595 | pic:3' GCCGAACTTGCACAGGGGATA 5'& |||||||| &5' -------------TCCCCTAT 3' |
Tom1 | mcmv-miR-m21-1 | beg:287 | end:304 | pic:3' GCCGAACTTGCAC----AGGGGATA 5'& ||| ||||||. &5' ----------GTGATATTCCCCTG- 3' |
Tom1 | mcmv-miR-M23-2 | beg:592 | end:613 | pic:3' GGCGAACT-GGCTCCGGGGGTA 5'& | |||| |.| ||.||| &5' -C-CTTGCTCTGTA-CCTCCA- 3' |
Tom1 | mcmv-miR-M87-1 | beg:268 | end:288 | pic:3' CGACGGCGACGGCTGCCGACGGA 5'& |.| ||. ||||||.| &5' ----CTGGTGTAA--GGCTGCTT 3' |
Tom1 | mghv-miR-M1-3 | beg:631 | end:642 | pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& |||||||| &5' -------------GCTCACCT- 3' |
Tom1 | mmu-let-7b | beg:564 | end:587 | pic:3' TTGGTGTGTTGGA--TGATGGAGT 5'& || || ||| |||.|||. &5' --CC-CAGTTCCTCCACTGCCTT- 3' |
Tom1 | mmu-let-7b | beg:19 | end:44 | pic:3' TTGGTGTGTTGGATGATG-GAGT 5'& |.|| || ..|||. || |||| &5' AGCC-CAGGGCCTGACACTCTCA 3' |
Tom1 | mmu-let-7d | beg:568 | end:588 | pic:3' TTGATACGTTGGA--TGATGGAGA 5'& |. ||| |||.|||.| &5' ------GTT-CCTCCACTGCCTTT 3' |
Tom1 | mmu-miR-1188 | beg:26 | end:48 | pic:3' AGGACCGGGTTG---GAGTGTGGT 5'& |||| || ||||.||| &5' ----GGCCTGACACTCTCATACC- 3' |
Tom1 | mmu-miR-1188 | beg:328 | end:351 | pic:3' AGGAC-CGGG----TTGGAGTGTGGT 5'& | |||| .|| .||||.| &5' ----GAGCCCTCCAGACTCTACACTA 3' |
Tom1 | mmu-miR-1191 | beg:270 | end:285 | pic:3' ATCCCGATGTATCATTCTGAC 5'& ||. |||||.||| &5' ---GGT------GTAAGGCTG 3' |
Tom1 | mmu-miR-125a-3p | beg:621 | end:644 | pic:3' CCGAGGGTT--CTTGGAGTGGACA 5'& |||| |.. ||||||||| &5' ----CCCACCTGGGGCTCACCTGT 3' |
Tom1 | mmu-miR-137 | beg:345 | end:367 | pic:3' GATGCGCATAAGAATTCGTTATT 5'& ||| || ||.||||||. &5' CTAACAG---TC-TAGGCAATAG 3' |
Tom1 | mmu-miR-142-3p | beg:353 | end:379 | pic:3' AGGTATT---TCATCCTTTGTGATGT 5'& ||.| || ||||.|||.||| &5' TCTAGGCAATAG-AGGAGACATTAC- 3' |
Tom1 | mmu-miR-146bstar | beg:219 | end:237 | pic:3' TGGTCTTGACTCAGGGATCCCG 5'& |||||| |||.|||| &5' ------ACTGAGA-CCTGGGGC 3' |
Tom1 | mmu-miR-1892 | beg:294 | end:318 | pic:3' TAGGAGGG--AGGGCAGGGGTTTA 5'& ||| ||. |||| ||||||.| &5' -TCC-CCTGGTCCCTTCCCCAGA- 3' |
Tom1 | mmu-miR-1894-3p | beg:54 | end:71 | pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& |||| || |||||||| &5' --CCCT----CC-CTCCCTTG- 3' |
Tom1 | mmu-miR-1896 | beg:297 | end:320 | pic:3' GAGGAGT-GGGT-GGTAGTCTCTC 5'& ||| . ||| || |||||| &5' --CCTGGTCCCTTCCC-CAGAGA- 3' |
Tom1 | mmu-miR-1897-5p | beg:98 | end:123 | pic:3' GGGGGAGAA-AGAGGTAGGTTTC 5'& |||| ||| |||.| |||.|| &5' -CCCCGCTTCTCTTCTCCCAGAG 3' |
Tom1 | mmu-miR-1902 | beg:591 | end:611 | pic:3' TTCAGT-ACGGATGACGTGGAGA 5'& || |||. |||.||||| &5' ---TCCTTGCT--CTGTACCTC- 3' |
Tom1 | mmu-miR-1937a | beg:431 | end:446 | pic:3' ACCCCCGAGCAGGCCCTAA 5'& |||| |..||||| &5' ----GGCT--TTTGGGAT- 3' |
Tom1 | mmu-miR-1940 | beg:560 | end:580 | pic:3' TTGACGAGGTGGAAGAGTC-AGGAGGTA 5'& ||||| || || ||||||| &5' ----GCTCC-CC-----AGTTCCTCCA- 3' |
Tom1 | mmu-miR-1940 | beg:154 | end:168 | pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& |||| |||||| &5' ---------------TCAGCCCTCCA- 3' |
Tom1 | mmu-miR-1949 | beg:259 | end:279 | pic:3' TTGATACGACTGTAGGACCATATC 5'& ||| .||| ||||||.|| &5' --CTAA-TTGA---CCTGGTGTA- 3' |
Tom1 | mmu-miR-1955 | beg:615 | end:637 | pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& ..||| || || ||||||.|| &5' --GGGCTCCACC-CA-CCTGGGGCT 3' |
Tom1 | mmu-miR-1959 | beg:572 | end:592 | pic:3' GAGGTGACTCGATGTAGGGG 5'& |||||||| || ||||| &5' CTCCACTGC-CTT--TCCCC 3' |
Tom1 | mmu-miR-1961 | beg:576 | end:587 | pic:3' AAGATTGATGATGGAGT 5'& |||.|||. &5' --------ACTGCCTT- 3' |
Tom1 | mmu-miR-2135 | beg:522 | end:543 | pic:3' CAAAGCCGGGGT-----TCTGGAGA 5'& ||. .|| ||||||| &5' -----GGTGTCAAGATGAGACCTC- 3' |
Tom1 | mmu-miR-2140 | beg:587 | end:610 | pic:3' TGGT--GGTTCTAGACGTGGA 5'& || || | ||||.|||| &5' -CCTATCCTTGCTCTGTACCT 3' |
Tom1 | mmu-miR-2140 | beg:478 | end:499 | pic:3' TGGTGGTTCTA-GACGTGGA 5'& |.. .| || ||||||| &5' -CTGGTACGAAACTGCACC- 3' |
Tom1 | mmu-miR-2145 | beg:19 | end:42 | pic:3' TTGG--TCCGGGCTGGGACGA 5'& |.|| .||||.||| || || &5' AGCCCAGGGCCTGACACT-CT 3' |
Tom1 | mmu-miR-2146 | beg:45 | end:63 | pic:3' GTGTACCTTGGGAAGAGGTG 5'& ||| |||..||| |||| &5' CAC-TGGGGCCC--CTCC-- 3' |
Tom1 | mmu-miR-27a | beg:277 | end:294 | pic:3' CGCCTTGAATCGGTGACACTT 5'& ..|| ||. |||||| &5' ----GGCT--GCTTCTGTGA- 3' |
Tom1 | mmu-miR-296-5p | beg:628 | end:638 | pic:3' TGTCCTAACTCCCCCCCGGGA 5'& |||||.| &5' -------------GGGGCTC- 3' |
Tom1 | mmu-miR-30astar | beg:128 | end:151 | pic:3' CGACGTTTGTA-GGCTGACTTTC 5'& ||||. . .| ||||||.| &5' ---GCAAGGGGGTCAACTGAAGG 3' |
Tom1 | mmu-miR-30astar | beg:153 | end:174 | pic:3' CGACGTTTGT-AGGCTGACTTTC 5'& |. |.| ||| ||||.|| &5' ---GTCAGCCCTCC-ACTGGAA- 3' |
Tom1 | mmu-miR-30c-1star | beg:107 | end:121 | pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& .|.|||||||| &5' -----------TCTTCTCCCAG 3' |
Tom1 | mmu-miR-30c-2star | beg:107 | end:121 | pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& .|||||||||| &5' -----------TCTTCTCCCAG 3' |
Tom1 | mmu-miR-30estar | beg:153 | end:174 | pic:3' CGACATTTGT-AGGCTGACTTTC 5'& || |.| ||| ||||.|| &5' ---GTCAGCCCTCC-ACTGGAA- 3' |
Tom1 | mmu-miR-326 | beg:298 | end:319 | pic:3' TGACCTCCTTCCCGGGTCTCC 5'& |||| ||||||| &5' -CTGGTCCCTTC-CCCAGAG- 3' |
Tom1 | mmu-miR-326 | beg:542 | end:564 | pic:3' TGACCTCCTT---CCC--GGGTCTCC 5'& ||||| ||| ||||||| &5' ----GAGGATTCTGGGTACCCAGAG- 3' |
Tom1 | mmu-miR-327 | beg:645 | end:660 | pic:3' TAGGAGTACGGGGAGTTCA 5'& || .|||||.|| &5' -------TGGTCCTCAGGT 3' |
Tom1 | mmu-miR-327 | beg:570 | end:589 | pic:3' TAGGAGT--ACGGGGAGTTCA 5'& ||||| ||||..|| &5' -TCCTCCACTGCCTTTC---- 3' |
Tom1 | mmu-miR-330 | beg:297 | end:320 | pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& |||.. | | |||||||| &5' -CCTGGTCC-CTTCCCCAGAGA 3' |
Tom1 | mmu-miR-339-5p | beg:646 | end:667 | pic:3' GCACTCGAGGACCTCC-TGTCCCT 5'& | |||| ||| ||||||| &5' -----GGTCCTC-AGGTACAGGGA 3' |
Tom1 | mmu-miR-343 | beg:654 | end:669 | pic:3' AGACCCGTGTACTTCCCTCT 5'& ||.|| ||||||| &5' ----GGTAC----AGGGAGA 3' |
Tom1 | mmu-miR-3470b | beg:392 | end:414 | pic:3' GGTCGGACCAGATGTCTCACT 5'& ||| || ||.|||||||. &5' CCATCCCC--CTGCAGAGTGG 3' |
Tom1 | mmu-miR-3475 | beg:593 | end:614 | pic:3' AAGTTTGGTACACGGAGGTCT 5'& | .|. ||| ||||||| &5' --CTTGCTCTGTACCTCCAG- 3' |
Tom1 | mmu-miR-34a | beg:457 | end:481 | pic:3' TGTTGGTCGATTCT----GTGACGGT 5'& || |||.|| |||||.| &5' ----CCTGCTGAGCTGCCCACTGTC- 3' |
Tom1 | mmu-miR-34a | beg:565 | end:585 | pic:3' TGTTGGTCGATTCTGTGACGGT 5'& ||||.| ||||||| &5' ----CCAGTTCCTCCACTGCC- 3' |
Tom1 | mmu-miR-376b | beg:277 | end:295 | pic:3' TTCACCTACAAGGAGATACTA 5'& || || |.|||.|||| &5' ----GGCTG--CTTCTGTGAT 3' |
Tom1 | mmu-miR-378 | beg:339 | end:360 | pic:3' GGAAGACTGAGGT-------TCAGGTCA 5'& ||||.| ||||.|| &5' -------ACTCTACACTAACAGTCTAG- 3' |
Tom1 | mmu-miR-381 | beg:661 | end:683 | pic:3' TGTCTCTCGAACGG-GAACATAT 5'& .||||| |||| .|||||| &5' --GGAGAGG-TGCCTTTTGTAT- 3' |
Tom1 | mmu-miR-423-5p | beg:567 | end:589 | pic:3' TTTCAGAGCGAGA-GACGGGGAGT 5'& || .|| ||| |||||..|| &5' --AG-TTC-CTCCACTGCCTTTC- 3' |
Tom1 | mmu-miR-449a | beg:501 | end:522 | pic:3' TGGTCGATTGTTATGTGACGGT 5'& | || |||| ||||||| &5' -CGAGGAAACATCTCACTGCC- 3' |
Tom1 | mmu-miR-449a | beg:565 | end:585 | pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||||.| ||||||| &5' -CCAGTTCCTC---CACTGCC- 3' |
Tom1 | mmu-miR-449a | beg:464 | end:481 | pic:3' TGGTCGATTGTTATGTGACGGT 5'& |||| .| |||||.| &5' ---AGCT-GCC---CACTGTC- 3' |
Tom1 | mmu-miR-449b | beg:565 | end:586 | pic:3' CGGTCGATTGTTGTGACGGA 5'& ||||.| | |||||||| &5' -CCAGTTC-CTCCACTGCCT 3' |
Tom1 | mmu-miR-449b | beg:499 | end:522 | pic:3' CGGTCGATTGTT--GTGACGGA 5'& | || |||| ||||||| &5' -CGAGGAAACATCTCACTGCC- 3' |
Tom1 | mmu-miR-449c | beg:565 | end:586 | pic:3' GGTCGATCGTTACGTGACGGA 5'& ||||.| |||||||| &5' CCAGTTCCTC---CACTGCCT 3' |
Tom1 | mmu-miR-450a-3p | beg:556 | end:573 | pic:3' TACTTACGTTTCGTAGGGGTTA 5'& ||.||| ||||||.| &5' -------CAGAGC-TCCCCAGT 3' |
Tom1 | mmu-miR-450a-3p | beg:667 | end:689 | pic:3' TACTTACGTTT--CGTAGGGGTTA 5'& ..||| |.|||||||| &5' ---GGTGCCTTTTGTATCCCCAA- 3' |
Tom1 | mmu-miR-465a-3p | beg:296 | end:307 | pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.|| &5' --------------CCCTGGTC 3' |
Tom1 | mmu-miR-465b-3p | beg:296 | end:307 | pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.|| &5' --------------CCCTGGTC 3' |
Tom1 | mmu-miR-465c-3p | beg:296 | end:307 | pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.|| &5' --------------CCCTGGTC 3' |
Tom1 | mmu-miR-470 | beg:510 | end:534 | pic:3' TGAGTGGTCACGGTCA--GGTTCTT 5'& |||||.. |||| .||||| &5' -CTCACTGC--CCAGGTGTCAAGA- 3' |
Tom1 | mmu-miR-484 | beg:25 | end:36 | pic:3' TAGCCCTCCCCTGACTCGGACT 5'& |.|||||| &5' --------------GGGCCTGA 3' |
Tom1 | mmu-miR-544 | beg:401 | end:412 | pic:3' CTCGAACGATTTTTACGTCTTA 5'& ||||||.| &5' --------------TGCAGAGT 3' |
Tom1 | mmu-miR-666-3p | beg:4 | end:26 | pic:3' TCGTCCGCTA-GTGCGACGTCGG 5'& .||. ||. |||||||| &5' ---GGGTCTGGCATCCTGCAGCC 3' |
Tom1 | mmu-miR-667 | beg:76 | end:95 | pic:3' GAACCCGACCCACCGTCCACAGT 5'& |||| ||| .|||||. &5' -----GCTGCTTGG-GGGTGTT- 3' |
Tom1 | mmu-miR-675-5p | beg:480 | end:499 | pic:3' TGACACCCGGGAAA-GGCGTGGT 5'& || | |.||||| &5' ------GGTACGAAACTGCACC- 3' |
Tom1 | mmu-miR-682 | beg:476 | end:497 | pic:3' GTCTGAAGTGACAC-----TGACGTC 5'& || ||| |||||| &5' ------TC-CTGGTACGAAACTGCA- 3' |
Tom1 | mmu-miR-693-3p | beg:267 | end:286 | pic:3' AATGTCGGTGTAGACTTTCGACG 5'& || .| | ||.||||| &5' ------CCTGGTGT-AAGGCTGC 3' |
Tom1 | mmu-miR-693-3p | beg:63 | end:84 | pic:3' AATGTCGGTG-TAGACTTTCGACG 5'& || .| |||||||| &5' ------CCTTGGTATTAAAGCTGC 3' |
Tom1 | mmu-miR-709 | beg:171 | end:194 | pic:3' AGGAGGACGGA----GACGGAGG 5'& ||||| || ||||||.| &5' ---TCCTGGCTGGTCCTGCCTTC 3' |
Tom1 | mmu-miR-742 | beg:422 | end:441 | pic:3' AAATGGGTCGTAC-CACCGAAAG 5'& ||| ||||||||. &5' -------AGCTTCAGTGGCTTTT 3' |
Tom1 | mmu-miR-744star | beg:117 | end:134 | pic:3' TCCAACTCCAATCACCGTTGTC 5'& ||| ||||.|| &5' -----GAGCCTG--GGCAGCA- 3' |
Tom1 | mmu-miR-744star | beg:356 | end:367 | pic:3' TCCAACTCCAATCACCGTTGTC 5'& |||||.|| &5' --------------GGCAATAG 3' |
Tom1 | mmu-miR-760 | beg:105 | end:125 | pic:3' AGGGGTGTCTGGGTCTCGGC 5'& ||.|. | ||||||||| &5' TCTCTTCT--CCCAGAGCC- 3' |
Tom1 | mmu-miR-760 | beg:13 | end:33 | pic:3' AGGGGTGTCTGGGTCTCGGC 5'& .|| ||| |||||.||| &5' -TCCTGCAG-CCCAGGGCC- 3' |
Tom1 | mmu-miR-767 | beg:256 | end:279 | pic:3' ACGAGTCTG------TTGGTACCACGT 5'& .||| .||| |||||.| &5' -----GGACCTAATTGACC-TGGTGTA 3' |
Tom1 | mmu-miR-770-3p | beg:618 | end:640 | pic:3' GGTCGAGGTGCAGTCCGGGTGC 5'& ||| | |||| | .|||.||| &5' CCA-C-CCACCTGGGGCTCAC- 3' |