DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004624 mmu-miR-15a* 268749 Rnf31 acUCCGUCGUGUCAUACCGGAc | | :|||: |||||||| uaAAGAGGCAUCUUAUGGCCUa 2 21 65 86 [mm9:14:56222487-56222508:+] 0.5761 160 7 -22.34 -1.0194 MIMAT0002110 mmu-miR-469 268749 Rnf31 ccuguGGUUCUAGUUACUUUCUCCGu |||: | |||| |||||||| caguuCCAGCACCAAU-AAAGAGGCa 2 22 50 74 [mm9:14:56222472-56222496:+] 0.5761 171 7 -22.04 -1.2012 MIMAT0002889 mmu-miR-532-5p 268749 Rnf31 ugccaGGAUGUGAGUUCCGUAc || |:| :|||||| cagcaCCAAUA-AAGAGGCAUc 2 18 56 76 [mm9:14:56222478-56222498:+] 0.5761 127 6 -13.19 -0.1551 MIMAT0003167 mmu-miR-540-3p 268749 Rnf31 ggucCUA-GCUGGA-GACUGGa ||| |||:| |||||| uccuGAUGGGACUUCCUGACCc 2 17 16 37 [mm9:14:56222438-56222459:+] 0.5761 123 6 -19.37 -0.1622 MIMAT0003501 mmu-miR-711 268749 Rnf31 gaauguagagaggGGCCCAGGg |||||||| ---uagcagagagCCGGGUCCu 2 10 1 19 [mm9:14:56222423-56222441:+] 0.6037 145 7 -20.57 -0.4669 MIMAT0009397 mmu-miR-1933-3p 268749 Rnf31 uaucagugugacuaCCAGGACc ||||||| -uagcagagagccgGGUCCUGa 2 9 1 21 [mm9:14:56222423-56222443:+] 0.6037 140 7 -15.70 -0.5680 MIMAT0009435 mmu-miR-1962 268749 Rnf31 uacacAGGGUCACGGU-CGGAGa |:|| | ||| ||||| gggacUUCCUGACCCAGGCCUCa 2 18 23 45 [mm9:14:56222445-56222467:+] 0.5761 121 0 -17.61 -0.1066 MIMAT0003128 mmu-miR-485 268749 Rnf31 cuuAAGUAGUGCCGGU-CGGAGa ||| | || ||| ||||| gacUUCCUGAC--CCAGGCCUCa 2 20 25 45 [mm9:14:56222447-56222467:+] 0.5761 120 0 -14.22 -0.1066

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G071322 Rnf31 Mus musculus 268749

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf31 mmu-miR-469 beg:55 end:75 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& .|||||| ||||||||| &5' --GCACCAAT-------AAAGAGGCA 3' Rnf31 mmu-miR-15astar beg:68 end:85 pic:3' ACTCCGTCGTGTCATACCGGAC 5'& |||||| | |||||||| &5' -GAGGCATCT---TATGGCCT- 3' Rnf31 mmu-miR-1188 beg:26 end:52 pic:3' AGGACCGGGT-TGGAGT-GTGGT 5'& ||||| |||| .||||| || || &5' TCCTGACCCAGGCCTCAGCAGCA 3' Rnf31 mmu-miR-146bstar beg:0 end:26 pic:3' TGG-TCTTGACTCAGGGAT-CCCG 5'& .| |||.| |.||||. ||| &5' GCAGAGAGCCGGGTCCTGATGGG- 3' Rnf31 mmu-miR-18a beg:65 end:80 pic:3' GATAGACGTGATCTACGTGGAAT 5'& ||| |||.|||| &5' -----------AGAGGCATCTTA 3' Rnf31 mmu-miR-18b beg:65 end:80 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& ||| |||.|||| &5' -----------AGAGGCATCTTA 3' Rnf31 mmu-miR-2135 beg:25 end:45 pic:3' CAAAGCCG-GGGTTCTGGAGA 5'& ||| ||| ||.|||| &5' --TTCCTGACCC-AGGCCTC- 3' Rnf31 mmu-miR-2861 beg:24 end:45 pic:3' GGCGGGCGGCGGTCCGGGG 5'& |. ||.| | |||||||.| &5' CTTCCTGAC-CCAGGCCTC 3' Rnf31 mmu-miR-296-3p beg:21 end:45 pic:3' CCTCTCGGAGG--TGGGTTGGGAG 5'& |.|| |.||| |||||. |||| &5' -GGGA-CTTCCTGACCCAGGCCTC 3' Rnf31 mmu-miR-331-5p beg:10 end:34 pic:3' CCTAGGG--ACCCTGGTATGGATC 5'& ||.|||. ||||||. |||. &5' GGGTCCTGATGGGACTT--CCTG- 3' Rnf31 mmu-miR-511 beg:55 end:76 pic:3' ACTCACGTCTCG--TTTTCCGTA 5'& ||| ||.|||||| &5' -----GCACCAATAAAGAGGCAT 3' Rnf31 mmu-miR-683 beg:30 end:53 pic:3' CTCCTGTG-TCGAA--TGTCGTCC 5'& ||| .|| .|||||| &5' ---GACCCAGGCCTCAGCAGCAG- 3' Rnf31 mmu-miR-711 beg:0 end:20 pic:3' GAATGTAGAGAGGGGCCCAGGG 5'& .|| ||||||||. &5' ---GCAGAGAG--CCGGGTCCT 3' Rnf31 mmu-miR-93star beg:36 end:50 pic:3' GCCCTTCACGATC-GAGTCGTCA 5'& .| |||||||| &5' -----------GGCCTCAGCAG- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Rnf31; Paul mmu-miR-127 9 33 -CGGUUCGAGUCUGCCU---AGGCU |||::|: | ||:||: ||| AGCCGGGUCCUGAUGGGACUUCCU- Rnf31; Paul mmu-miR-133a 8 30 UGUCGA-CCA--ACUUCCCCUGGUU ||| ||| ||| |||||: -GAGCCGGGUCCUGAU-GGGACUU- Rnf31; Paul mmu-miR-133b 8 30 AUCGA-CCA--ACUUCCCCUGGUU ||| ||| ||| |||||: GAGCCGGGUCCUGAU-GGGACUU- Rnf31; Paul mmu-miR-149 2 17 CCUCACUUCUGUGCCUCGGUCU- :|| |||||:|: --------AGCAGAGAGCCGGGU Rnf31; Paul mmu-miR-17-3p 38 55 AUGUUCACGGGAGU-GACGUCA- | ||||| | ||||| ------AGGCCUCAGCAGCAGUU Rnf31; Paul mmu-miR-18 57 81 AUAGACGUGA-----UCUACGUGGAAU- |||| ||| |||:|||| ----AGCACCAAUAAAGAGGCAUCUUAU Rnf31; Paul mmu-miR-22 48 80 -UGUCAAGAA-GU-------UGACCGUCGAA- :|||||| || | |||| ||| AGCAGUUCCAGCACCAAUAAAGAGGCAUCUUA Rnf31; Paul mmu-miR-224 7 31 AUUU-GCCUUGGUG-AUCACUGAAU :|: |||: || |:| ||||| AGAGCCGGGUCCUGAUGG-GACUUC Rnf31; Paul mmu-miR-24 15 40 GACAAGGACGA-CUUG----ACUCGGU- ||||| |:|| ||| ||| ---GUCCUGAUGGGACUUCCUGACCCAG Rnf31; Paul mmu-miR-295 37 63 -UCU-GAGUUUUCAUCA---UCGUGAAA ||: ||||: || ||| ||||| CAGGCCUCAGCAGCAGUUCCAGCACC-- Rnf31; Paul mmu-miR-296 2 21 -UGUCCUAACUCCCCCCCGGGA- :||| ||| |||:||| AGCAGA---GAGCC-GGGUCCUG Rnf31; Paul mmu-miR-298 12 44 -CCUU---CUUGUCGGGAGGAGA-----CGG- ||: || :| |:|||| ||| CGGGUCCUGAUGGGACUUCCUGACCCAGGCCU Rnf31; Paul mmu-miR-302 58 81 AGUGGUUUUGUACCUUCGU-GAAU- |||||| ||:||| |||| GCACCAAUAAA--GAGGCAUCUUAU Rnf31; Paul mmu-miR-326 5 26 UGACCUC-CUUCCCGGGUCU-CC- ||| | |||:|| || || ---AGAGAGCCGGGUCCUGAUGGG Rnf31; Paul mmu-miR-331 21 52 AAGAUCCUA----------UCCGG-GUCCCCG- |:||| ||||| ||| || --AUGGGACUUCCUGACCCAGGCCUCAGCAGCA Rnf31; Paul mmu-miR-345 23 50 CGUGACCUGA---------UCCCCAGUCGU- ||||| ||| |||||| ----GGGACUUCCUGACCCAGGCCUCAGCAG Rnf31; Paul mmu-miR-370 8 52 -UUGGUCCA------------AGG--------UGGGGUCGUCCG |:||:||| ||| :||:|||||| | GAGCCGGGUCCUGAUGGGACUUCCUGACCCAGGCCUCAGCAG-CA Rnf31; Paul mmu-miR-423 30 61 -GACUCC--CCGGAGUCU-------GGCUCGA |||| |||||||| || ||| CCUGACCCAGGCCUCAGCAGCAGUUCC-AGCA Rnf31; Paul mmu-miR-425 13 36 -CCGC--CUGUGCUGUAAGGGCUA ||: ||: ||| ||||:|| GGGUCCUGAUGGGAC-UUCCUGAC Rnf31; Paul mmu-miR-465-3p 2 24 AGAUGAAUCUU--UCCGGGACUAG :| |||: :||:|||||| --AGCAGAGAGCCGGGUCCUGAUG Rnf31; Paul mmu-miR-469 57 76 CCUGUGGUUCUAGUUACUUUCUCCGU- :|||||| ||||||||| -AGCACCAAU-------AAAGAGGCAU Rnf31; Paul mmu-miR-490 1 27 GUCGUAC-----CUCAGGAG-GUCCAAC :|||| |:||||| ::|| UAGCAGAGAGCCGGGUCCUGAUGGGA-- Rnf31; Paul mmu-miR-540 10 38 -GGUCCUAG-------CUGGAG-ACUGGA ||:|| || |||:|| ||||| GCCGGG-UCCUGAUGGGACUUCCUGACCC Rnf31; Paul mmu-miR-542-5p 11 36 -GCACUGUACUACU---AGGGGCUC || | | |||||: |:||:|| CCGGGUCCUGAUGGGACUUCCUGAC Rnf31; Paul mmu-miR-615 19 46 UUCU-CCCU------CUGGGUCC-GAGCCU || |||| |||||||| ||| -UGAUGGGACUUCCUGACCCAGGCCUCA-- Rnf31; Paul mmu-miR-665 22 46 AUUCCCUGGAG--------UCGGAGGACCA |||||:|| :||||| --UGGGACUUCCUGACCCAGGCCUCA---- Rnf31; Paul mmu-miR-666 38 61 -CCGAGAGU-GUCGACACGGGCGA ||| |||| |||| || || || AGGC-CUCAGCAGCAGUUCCAGCA Rnf31; Paul mmu-miR-671 10 34 GGAGGUCGGGGAGGUCCC-GAAGGA- ||:| :||| ||| |||||| --GCCGGGUCCUGAUGGGACUUCCUG Rnf31; Paul mmu-miR-675-5p 30 65 UGACAC---CCGGGA--------AAGG-CGUGGU- ||| ||||: |||| |||||| CCUGACCCAGGCCUCAGCAGCAGUUCCAGCACCAA Rnf31; Paul mmu-miR-683 22 54 CUCCUGUG---------UCGAA--UGUCGUCC :|||| :|| :|||||| UGGGACUUCCUGACCCAGGCCUCAGCAGCAGU Rnf31; Paul mmu-miR-699 7 34 GCUCGGUCCAG------CGUGACGGA- |||||:|||| | ||| ||| AGAGCCGGGUCCUGAUGGGACUUCCUG Rnf31; Paul mmu-miR-702 7 27 -CUCGCCCCAUUUCCCACCCGU |||| |||| |||| AGAGCCGGGUCCUGA-UGGGA- Rnf31; Paul mmu-miR-709 26 46 AGGAGGAC-GGAGACGGAGG |:||||| || ||||| ACUUCCUGACCCAGGCCUCA Rnf31; Paul mmu-miR-711 2 21 GAAUGUAGAGAGGGGCCCAGGG- :|| ||||||||: --AGCAGAGAG--CCGGGUCCUG Rnf31; Paul mmu-miR-744 30 50 CGACAAUCGGGAUCGGGG-CGU- ||| ||| :|||:| ||| CCUGA---CCCAGGCCUCAGCAG Rnf31; Paul mmu-miR-762 30 58 CGAGACAGGG-CCGGGGUCG------GGG- ||| ||| ||||:|||| :|| --CCUGACCCAGGCCUCAGCAGCAGUUCCA Rnf31; Paul mmu-miR-801 24 56 CAGCU-AAGGC----GUGCG----UGUCGUUAG- || |||| || || :|||||:|: --GGACUUCCUGACCCAGGCCUCAGCAGCAGUUC Rnf31; Paul mmu-miR-469 67 74 CCUGUGGUUCUA-------------------GUUACUUUCUCCGU ||| |||:| |||| ||||||||| UGAC-CCAGGCCUCAGCAGCAGUUCCAGCACCAAU-AAAGAGGCAU Rnf31; Paul mmu-miR-127 3 20 CGGUUCGAGUCUGCCUAGGcu || :|| || |||:||| GCAGAG---AGCCGGGTCCtg Rnf31; Paul mmu-miR-133a 7 30 UGUCGACCAA--CUUCCCCUGguu | ||| || | :| ||||| AGAGCCGGGTCCTGATGGGACttc Rnf31; Paul mmu-miR-133b 8 30 aUCGACCAA--CUUCCCCUGguu ||| || | :| ||||| gAGCCGGGTCCTGATGGGACttc Rnf31; Paul mmu-miR-149 1 15 ccucacuUCUGUGCCUCGGUCu || || |||||:| ------tAG-CAGAGAGCCGGg Rnf31; Paul mmu-miR-17-3p 35 53 auGUUCACGGGAG-UGACGUCA ||:| |||| :| ||||| ccCAGG---CCTCAGCAGCAGT Rnf31; Paul mmu-miR-18 53 79 auaGACGUG---A--UCUACGUGGAAU | |||| | ||| |||:|||| ttcCAGCACCAATAAAGAGGCATCTTA Rnf31; Paul mmu-miR-193 21 46 gACCCUGAA--AC---AUCCGGucaa |||||||| || ||||| aTGGGACTTCCTGACCCAGGCCtcag Rnf31; Paul mmu-miR-22 49 78 uGUCAAG--------AAGUUGACCGUCGAA |||||| | || |||| ||| gCAGTTCCAGCACCAATAAAGAGGCATCTT Rnf31; Paul mmu-miR-224 8 30 aUUUGCCUUGGUGAUCACUGAAu |: |||: || | ||||| gAGCCGGGTCCTGATGGGACTTc Rnf31; Paul mmu-miR-24 12 38 GACAAGGACGACUU-----GACUCGGU | | ||||| ||:: |||| ||| CGGGTCCTGATGGGACTTCCTGACCCA Rnf31; Paul mmu-miR-295 39 64 uCUGAGUUUUCAUCA---UCGUGaaa | ||||: || ||| ||||| gGCCTCAGCAGCAGTTCCAGCACcaa Rnf31; Paul mmu-miR-296 1 19 uguccuaacuccccCCCGGGA |||:||| --tagcagagagccGGGTCCT Rnf31; Paul mmu-miR-298 24 48 CCUUCUUGUC-GGG--AGGAGACGg ||| | | ||| |||| || GGACTTCCTGACCCAGGCCTCAGCa Rnf31; Paul mmu-miR-326 17 42 uGACCUCCUU-----CCCGGGUCucc ||| ||:| | ||||| cCTGATGGGACTTCCTGACCCAGgcc Rnf31; Paul mmu-miR-331 19 43 aagAUCCU--A--UCCGGGUCCccg |:||| | | |||||| tgaTGGGACTTCCTGACCCAGGcct Rnf31; Paul mmu-miR-345 28 48 cguGACCUGAUCCCC--AGUCGU ||| | | || |||||| ttcCTGACCCA--GGCCTCAGCA Rnf31; Paul mmu-miR-370 34 54 UUGGUCCAAGGUGGGGUCGUCcg | ||||| || | |||||| ACCCAGG--CCTCAGCAGCAGtt Rnf31; Paul mmu-miR-423 18 41 GACUCCCCGGA--GUCUGGCUCga |||| ||| || | |||| || CTGATGGGACTTCCTGACCCAGgc Rnf31; Paul mmu-miR-425 14 35 CC--GCCUGUGCUGUAAGGGCUa || | ||:: ||| ||||:|| GGTCCTGATGGGAC-TTCCTGAc Rnf31; Paul mmu-miR-469 50 74 ccuguGGUUCUAGUUACUUUCUCCGU |||: | |||| ||||||||| cagttCCAGCACCAAT-AAAGAGGCA Rnf31; Paul mmu-miR-490 18 43 GUCGUACCU--CAGGA---GGUCCaac | | ||||: |||| ||||| CTG-ATGGGACTTCCTGACCCAGGcct Rnf31; Paul mmu-miR-540 11 37 GGUCCUAG------CUGGA-GACUGGa ||:|| | |||:| |||||| CCGGGTCCTGATGGGACTTCCTGACCc Rnf31; Paul mmu-miR-542-5p 12 35 GCACUGUACUACU---AGGGGCUc || | | |||||: |:||:|| CGGGTCCTGATGGGACTTCCTGAc Rnf31; Paul mmu-miR-551b 2 28 guGACU-UUGGUUCA----UACCCAGc | || |:||::|| ||||| | agCAGAGAGCCGGGTCCTGATGGGACt Rnf31; Paul mmu-miR-615 18 47 uuCU-CCCU------CUGGGUCC-GAGCCu || |||| |||||||| ||| | ctGATGGGACTTCCTGACCCAGGCCTCAGc Rnf31; Paul mmu-miR-665 10 35 auuCCCUGGAGU---C-GGAGGACca ||| ||| | | |:||||| gccGGGTCCTGATGGGACTTCCTGac Rnf31; Paul mmu-miR-666 39 60 CCGAGAGU-GUCGACACGGGCGa ||| |||| |||| || || || GGC-CTCAGCAGCAGTTCCAGCa Rnf31; Paul mmu-miR-668 2 28 cCAUCACCCGGCUC--GGCU-CACUGu | || | ||||:| |:|| | ||| aGCAGAGAGCCGGGTCCTGATGGGACt Rnf31; Paul mmu-miR-671 8 32 ggaGGUCGGGGAGGUCCC-GAAGGA ||:| :||| ||| |||||| gagCCGGGTCCTGATGGGACTTCCT Rnf31; Paul mmu-miR-675-5p 39 63 ugacaccCG--GGAAAGG-CGUGGU || | |||| |||||| ggcctcaGCAGCAGTTCCAGCACCA Rnf31; Paul mmu-miR-683 30 53 cucCUGUGUC--GA-AUGUCGUCc ||| ||| || :|||||| cctGACCCAGGCCTCAGCAGCAGt Rnf31; Paul mmu-miR-702 8 27 CUCGCCCCAUUUCCCACCCgu |||| |||| | |||| GAGCCGGGT-CCTGATGGGac Rnf31; Paul mmu-miR-711 1 19 gaauguagagaggGGCCCAGGg |||||||| ---tagcagagagCCGGGTCCt Rnf31; Paul mmu-miR-762 41 62 cGAGACAGGGCCGGGGUCGGGG ||| | | |::||||| || cCTCAGCAGCAGTTCCAGCACC Rnf31; Paul mmu-miR-801 22 54 cagCU-AAGG-C---GUGCG----UGUCGUUAg || |||| | || || :|||||:| tggGACTTCCTGACCCAGGCCTCAGCAGCAGTt

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf31 RAID00246377 mmu-miR-6963-3p miRNA MIMAT0027827 Rnf31 mRNA 268749 Prediction 0.1828 Rnf31 RAID00712993 mmu-miR-15a-3p miRNA MIMAT0004624 Rnf31 mRNA 268749 Prediction 0.1828 Rnf31 RAID01605311 mmu-miR-485-5p miRNA MIMAT0003128 Rnf31 mRNA 268749 Prediction 0.1828 Rnf31 RAID03791369 mmu-mir-325 miRNA MI0000597 Rnf31 mRNA 268749 Prediction 0.1828