DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Trim60; 2czf45; Rnf33 ATTTA 382-1782 1794-1798;1807-1811;1879-1883;1992-1996;2161-2165;2187-2191;2614-2618

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT603197 mmu-miR-532-3p Mus musculus Trim60 234329 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004523 mmu-miR-29b* 234329 Trim60 auUUGGUGGUAUACUUUGGUCg ||||||:: | ||||||| uuAACCACUG-A--AAACCAGa 2 21 99 117 [mm9:8:67523977-67523995:-] 0.5093 155 7 -17.79 -0.9395 MIMAT0000129 mmu-miR-30a* 234329 Trim60 cgACGUUUGUA-GGCUGACUUUc | :|||: | | ||||||| cuUCUAAAUUUAACCACUGAAAa 2 21 90 112 [mm9:8:67523982-67524004:-] 0.5093 151 7 -10.58 -0.7737 MIMAT0004539 mmu-miR-183* 234329 Trim60 aauaccgggaagcCAUUAAGUg |||||||| cacauuuaagcuaGUAAUUCAg 2 10 22 43 [mm9:8:67524051-67524072:-] 0.5175 145 7 -8.83 -0.5505 MIMAT0004544 mmu-miR-193* 234329 Trim60 agUAGAACGGGCGU-UUCUGGGu ||| | | || ||||||| aaAUCCACCACCCACAAGACCCc 2 21 61 83 [mm9:8:67524011-67524033:-] 0.5134 151 7 -18.34 -0.3093 MIMAT0000249 mmu-miR-30e* 234329 Trim60 cgACAUUUGUA-GGCUGACUUUc | ||||: | | ||||||| cuUCUAAAUUUAACCACUGAAAa 2 21 90 112 [mm9:8:67523982-67524004:-] 0.5093 155 7 -9.98 -0.7737 MIMAT0001637 mmu-miR-452 234329 Trim60 cagagucaaaggagaCGUUUGu |||||| cuaguaauucagcaaGCAAACa 2 8 32 53 [mm9:8:67524041-67524062:-] 0.5175 120 6 -13.65 -0.1384 MIMAT0002106 mmu-miR-465a-5p 234329 Trim60 aguguagucaCGGUAAGAUUUAu |:| |||||||| gaccccccaaGUC-UUCUAAAUu 2 14 78 99 [mm9:8:67523995-67524016:-] 0.5093 147 7 -10.10 -0.7912 MIMAT0003451 mmu-miR-677 234329 Trim60 agucuucgauuaguaGUGACUu |||||| ucuucuaaauuuaacCACUGAa 2 8 89 110 [mm9:8:67523984-67524005:-] 0.5093 120 6 -10.53 -0.2087 MIMAT0004871 mmu-miR-465b-5p 234329 Trim60 gucuagucgugguAAGAUUUAu |||||||| gaccccccaagucUUCUAAAUu 2 10 78 99 [mm9:8:67523995-67524016:-] 0.5093 145 7 -8.84 -0.7948 MIMAT0004873 mmu-miR-465c-5p 234329 Trim60 gucuagucgCGGUAAGAUUUAu |:| |||||||| accccccaaGUC-UUCUAAAUu 2 14 79 99 [mm9:8:67523995-67524015:-] 0.5093 147 7 -9.73 -0.7984 MIMAT0005853 mmu-miR-669e 234329 Trim60 uacuuguacGUGUGUGUUCUGu ||| |||||||| aaaauccacCACCCACAAGACc 2 14 60 81 [mm9:8:67524013-67524034:-] 0.5134 157 7 -15.47 -0.1686 MIMAT0009430 mmu-miR-1957 234329 Trim60 caguauacgagaUGGUGAc |||||| cuucuaaauuuaACCACUg 2 8 90 108 [mm9:8:67523986-67524004:-] 0.5093 120 6 -12.64 -0.1415 MIMAT0000140 mmu-miR-128 234329 Trim60 uuucucuggccaagUGACACu |||||| ccacugaaaaccagACUGUGu 2 8 103 123 [mm9:8:67523971-67523991:-] 0.5093 120 6 -10.11 -0.1019 MIMAT0000151 mmu-miR-140 234329 Trim60 gaugguaucccauuUUGGUGAc ||||||| agucuucuaaauuuAACCACUg 2 9 87 108 [mm9:8:67523986-67524007:-] 0.5093 140 7 -16.42 -1.0985 MIMAT0004855 mmu-miR-876-3p 234329 Trim60 acuuaaugaaacAUUUGGUGAu | ||||||| agucuucuaaauUUAACCACUg 2 11 87 108 [mm9:8:67523986-67524007:-] 0.5093 142 7 -10.86 -1.0914

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G098644 Trim60 Mus musculus 234329 21205214 0 0 R38128; MOUSE$TRIM60_01; Binding factors: (RelA-p65)2 , (RelA-p65)2 , p50:RelA-p65 , RelA-p65:p50

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim60 mmu-miR-29bstar beg:98 end:117 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& ||||||.. ||||||| &5' --AACCACTGA---AAACCAG- 3' Trim60 mmu-miR-193star beg:68 end:83 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& ||| | ||||||| &5' --------CCCAC-AAGACCC- 3' Trim60 mmu-miR-669e beg:66 end:81 pic:3' TACTTGTACGTGTGTGTTCTGT 5'& ||| |||||||| &5' ---------CACCCACAAGAC- 3' Trim60 mmu-miR-1940 beg:75 end:96 pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& | || || ||||.||.| &5' ----GACCC-CCCA---AGTCTTCTA- 3' Trim60 mmu-miR-2136 beg:63 end:75 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& || |||||| &5' -----------CACCACCCA- 3' Trim60 mmu-miR-7a beg:84 end:96 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& |||||||.| &5' --------------AGTCTTCTA 3' Trim60 mmu-miR-7b beg:82 end:96 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& |||||||||.| &5' ------------CAAGTCTTCTA 3' Trim60 mmu-miR-183star beg:28 end:43 pic:3' AATACCGGGAAGCCATTAAGTG 5'& ||. |||||||| &5' -----GCTA----GTAATTCA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim60 RAID00207471 mmu-miR-6980-5p miRNA MIMAT0027862 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID00426256 mmu-miR-29b-1-5p miRNA MIMAT0004523 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID00544550 mmu-miR-876-3p miRNA MIMAT0004855 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID01246352 mmu-miR-1970 miRNA MIMAT0009444 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID01335734 mmu-miR-6947-3p miRNA MIMAT0027795 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID01376127 mmu-miR-7212-3p miRNA MIMAT0028393 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID01644538 mmu-miR-532-3p miRNA MIMAT0004781 Trim60 mRNA 234329 CLIP-seq//Prediction 0.6308 Trim60 RAID01905243 mmu-miR-7035-5p miRNA MIMAT0027974 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID02014334 mmu-miR-7228-3p miRNA MIMAT0028425 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID02056304 mmu-miR-7087-3p miRNA MIMAT0028081 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID02061810 mmu-miR-7037-3p miRNA MIMAT0027979 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID02077578 mmu-miR-7002-3p miRNA MIMAT0027907 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID02376173 mmu-miR-6951-5p miRNA MIMAT0027802 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID02695867 mmu-miR-485-3p miRNA MIMAT0003129 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID02853170 mmu-miR-6971-3p miRNA MIMAT0027845 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID03073599 mmu-miR-324-3p miRNA MIMAT0000556 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID03351215 mmu-miR-9769-3p miRNA MIMAT0036462 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID03421500 mmu-miR-7070-5p miRNA MIMAT0028046 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID03695759 mmu-miR-140-5p miRNA MIMAT0000151 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID03748949 mmu-miR-6927-5p miRNA MIMAT0027754 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID03779587 mmu-miR-218-5p miRNA MIMAT0000663 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID03786321 mmu-miR-128-3p miRNA MIMAT0000140 Trim60 mRNA 234329 Prediction 0.1828 Trim60 RAID03943518 mmu-miR-6985-5p miRNA MIMAT0027872 Trim60 mRNA 234329 Prediction 0.1828