DNA & RNA Element - RepTar |
Gene Name | miRNA | Begin | End | Profile |
Birc2 | mmu-miR-29bstar | beg:293 | end:313 | pic:3' ATTTGGTGGTATACTTTGGTCG 5'& .|| || |||||||||. &5' -GAAAT-CC---TGAAACCAGT 3' |
Birc2 | mmu-miR-205 | beg:109 | end:129 | pic:3' GTCTGAGGCCACCTTACTTCCT 5'& ||. | |||||||. &5' -----TCTTGCTTTATGAAGGG 3' |
Birc2 | mmu-miR-128 | beg:475 | end:493 | pic:3' TTTCTCTGGCCAAGTGACACT 5'& ||.| ||||||| &5' ----AGGCAAAA-CACTGTG- 3' |
Birc2 | mmu-miR-370 | beg:65 | end:84 | pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& .||| | |..||||||| &5' -TCAG----CTCTTCAGCAGG- 3' |
Birc2 | mmu-miR-412 | beg:269 | end:285 | pic:3' GCCGATCACCT-GGTCCACTT 5'& |||| .||||||| &5' -------TGGATTCAGGTGA- 3' |
Birc2 | mmu-miR-3099star | beg:23 | end:42 | pic:3' GTTCCCGACCTTC---CTTCGACC 5'& |.|||| ||||||| &5' -----GTTGGACATCAGAAGCTG- 3' |
Birc2 | mcmv-miR-m88-1 | beg:230 | end:248 | pic:3' TCTGGGGCTGTAGCTGAAGAC 5'& .|| || ||||||| &5' ----TCCTTCAG-GACTTCT- 3' |
Birc2 | mcmv-miR-m01-1 | beg:347 | end:366 | pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& |.| | ||.||||.| &5' ----TTGGTGC--TTTTCCTTT 3' |
Birc2 | mcmv-miR-m108-1 | beg:280 | end:300 | pic:3' GCTGTG-CTCGGTGGCAGTCTTT 5'& || . |||| ||||||| &5' -GATGTGGAGC-----TCAGAAA 3' |
Birc2 | mghv-miR-M1-5 | beg:53 | end:76 | pic:3' CTCTGCTG---GGCTAGAGTTGAGA 5'& |.|| |.|||.|||.|||| &5' ---ATGAACTACTGATTTCAGCTCT 3' |
Birc2 | mmu-let-7astar | beg:120 | end:141 | pic:3' CCTTTCTGTCATC-TAACATATC 5'& |||.| |||| |||||||| &5' -GAAGG---GTAGCATTGTATA- 3' |
Birc2 | mmu-let-7bstar | beg:475 | end:495 | pic:3' CCCTTCCGTCATCCAACATATC 5'& ||||| |||.|| &5' ----AGGCAAAACACTGTGTA- 3' |
Birc2 | mmu-let-7bstar | beg:122 | end:141 | pic:3' CCCTTCCGTCATCC-AACATATC 5'& ||||| |||| ||||||| &5' --GAAGG--GTAGCATTGTATA- 3' |
Birc2 | mmu-let-7c-2star | beg:124 | end:141 | pic:3' CCTTTCTGTCATC-TAACATATC 5'& .|||| |||||||| &5' --------GGTAGCATTGTATA- 3' |
Birc2 | mmu-let-7fstar | beg:120 | end:141 | pic:3' CCCTTCCGTTATC-TAACATATC 5'& ||||| .||| |||||||| &5' --GAAGG--GTAGCATTGTATA- 3' |
Birc2 | mmu-let-7fstar | beg:475 | end:495 | pic:3' CCCTTCCGTTATCTAACATATC 5'& |||||| |||.|| &5' ----AGGCAAAACACTGTGTA- 3' |
Birc2 | mmu-let-7gstar | beg:452 | end:468 | pic:3' CGTTCCGTCACCGGACATGTCA 5'& |.|||| |||.||| &5' -----GTAGTG---TGTGCAG- 3' |
Birc2 | mmu-miR-1 | beg:71 | end:92 | pic:3' TATGTATGAAGAAA---TGTAAGGT 5'& |||| ||||||.| &5' -------CTTCAGCAGGACATTCTA 3' |
Birc2 | mmu-miR-141star | beg:153 | end:170 | pic:3' AGGTTGTGACGTGACCTTCTAC 5'& .|||| |||||.| &5' -------TTGCAAGGGAAGGT- 3' |
Birc2 | mmu-miR-144 | beg:165 | end:179 | pic:3' TCATGTAGTAGATATGACAT 5'& .|||||.|||| &5' --------GTCTATGCTGT- 3' |
Birc2 | mmu-miR-155 | beg:115 | end:137 | pic:3' TGGGGATAGTGTTAATCGTAATT 5'& |..||| | |||||||. &5' --CTTTATGAAGGGTAGCATTG- 3' |
Birc2 | mmu-miR-1904 | beg:193 | end:213 | pic:3' GGAGG-GAGGTCTCCTCGTCTTG 5'& ||. .|||| ||||||.| &5' --TCTGTTCCA---GAGCAGGA- 3' |
Birc2 | mmu-miR-195 | beg:156 | end:181 | pic:3' CGGTTATAA---AGACACGACGAT 5'& ||| ||| |||||.|. &5' --CAAGGGAAGGTCTATGCTGTTG 3' |
Birc2 | mmu-miR-195 | beg:391 | end:413 | pic:3' CGGTTAT-AAAGACACGACGAT 5'& |. |||| ||||||| .||. &5' GTAAATATTTTCTGT-TTGT-- 3' |
Birc2 | mmu-miR-1955 | beg:196 | end:221 | pic:3' TTTTCGACGTCACGTAG--GACCCTGA 5'& |.| ||| ||| .|||||. &5' ----GTTCCAGAGCAGGAGTTGGGAT- 3' |
Birc2 | mmu-miR-1983 | beg:261 | end:285 | pic:3' TCTTTTGT-ACG-AGGTCCACTC 5'& ||||.| || |.||||||| &5' -GAAAGCTTTGGATTCAGGTGA- 3' |
Birc2 | mmu-miR-199a-3p | beg:45 | end:65 | pic:3' ATTGGTTACACGTCTGATGACA 5'& ||| | . ||||||| &5' ----CAAAGAATGAACTACTG- 3' |
Birc2 | mmu-miR-199b | beg:45 | end:65 | pic:3' ATTGGTTACACGTCTGATGACA 5'& ||| | . ||||||| &5' ----CAAAGAATGAACTACTG- 3' |
Birc2 | mmu-miR-204 | beg:146 | end:167 | pic:3' TCCGTATCCTAC--TGTTTCCCTT 5'& ||| || .| ||||||| &5' -----TAGTCTGTTGC-AAGGGAA 3' |
Birc2 | mmu-miR-20bstar | beg:438 | end:460 | pic:3' GATCTTCACGAGTGTGACGTCA 5'& ||. |||| ||.||.||| &5' --AGGCGTGCAT-CATTGTAGT 3' |
Birc2 | mmu-miR-2135 | beg:229 | end:248 | pic:3' CAAAGCCGGG--GTTCTGGAGA 5'& |.|| ||.|||.||| &5' ------GTCCTTCAGGACTTCT 3' |
Birc2 | mmu-miR-214 | beg:217 | end:230 | pic:3' TGACGGACAGACACGGACGACA 5'& |||.|||||| &5' ------------TGCTTGCTGT 3' |
Birc2 | mmu-miR-214star | beg:461 | end:483 | pic:3' CGTGTCGTTCACATCTGTCCGT 5'& | ||| .| |||| .|||||| &5' GTGCAGGGA-TGTATGCAGGCA 3' |
Birc2 | mmu-miR-24 | beg:164 | end:185 | pic:3' GACAAGG-ACGACTTGACTCGGT 5'& | ||. ||||| .|||||.| &5' --GGTCTATGCTG--TTGAGCTA 3' |
Birc2 | mmu-miR-29a | beg:338 | end:357 | pic:3' ATTGGCTA-AAGTCTACCACGAT 5'& |.| ||| ||||||| &5' ---CTGTGCTTCT--TGGTGCT- 3' |
Birc2 | mmu-miR-29astar | beg:23 | end:46 | pic:3' GACTTGTGGTTTTCTTTAGTCA 5'& ||.|||.||.||| .|||| &5' -TGGACATCAGAAGCTGTCAG- 3' |
Birc2 | mmu-miR-29b | beg:338 | end:357 | pic:3' TTGTGACTA-AAGTTTACCACGAT 5'& ||| ||| ||||||| &5' ----CTGTGCTTCT--TGGTGCT- 3' |
Birc2 | mmu-miR-29c | beg:338 | end:357 | pic:3' ATTGGCTA-AAGTTTACCACGAT 5'& |.| ||| ||||||| &5' ---CTGTGCTTCT--TGGTGCT- 3' |
Birc2 | mmu-miR-324-5p | beg:200 | end:223 | pic:3' TGTGGTTACGGGATC--CCCTACGC 5'& |||. || || ||||||| &5' ---CCAGAGCAGGAGTTGGGATGC- 3' |
Birc2 | mmu-miR-337-3p | beg:196 | end:217 | pic:3' TCCGTAGTATA-TCCTCGACTT 5'& |. || |||||.||. &5' --GTTCCAGAGCAGGAGTTGG- 3' |
Birc2 | mmu-miR-340-5p | beg:101 | end:125 | pic:3' TTAGTCAG-AGTAACGAAATATT 5'& .||.||| || |||||||||.| &5' GATTAGTAATC-TTGCTTTATGA 3' |
Birc2 | mmu-miR-346 | beg:461 | end:483 | pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& ||||| |. ||||.|| &5' ----GCAGGGATGTATGCAGGCA 3' |
Birc2 | mmu-miR-350 | beg:245 | end:267 | pic:3' CTTTCACAT--ACCCGAAACACTT 5'& || ||| |||||||| &5' -----TGGATTTGGAATTTGTGAA 3' |
Birc2 | mmu-miR-362-5p | beg:453 | end:472 | pic:3' TAAGTGTGGATC-CA-AGGTTCCTAA 5'& ||| || | ||.|||| &5' ---------TAGTGTGTGCAGGGAT- 3' |
Birc2 | mmu-miR-375 | beg:32 | end:52 | pic:3' AGTGCGC-TCGGCTTGCTTGTTT 5'& | |||.| ||||||| &5' ------GAAGCTGTCAGAACAAA 3' |
Birc2 | mmu-miR-381 | beg:122 | end:141 | pic:3' TGTCTCTCGAACGGGAACATAT 5'& ||.|. || ||||||| &5' ----AGGGTA-GCA-TTGTATA 3' |
Birc2 | mmu-miR-466c-5p | beg:486 | end:510 | pic:3' ATACATGTACGTGTGTGTGTAG 5'& |.||||.|| |.| |.| ||| &5' TGTGTATATA-ATAAATAAATC 3' |
Birc2 | mmu-miR-467a | beg:461 | end:483 | pic:3' GCGTA--TATGTACGTCCGTGAAT 5'& ||| ||..||||||||| &5' -GCAGGGATGTATGCAGGCA---- 3' |
Birc2 | mmu-miR-470star | beg:377 | end:396 | pic:3' AGAAGAGTCTTTCCATGACCAA 5'& .||.|| | ||||||| &5' -TTTTTCT----GCTACTGGT- 3' |
Birc2 | mmu-miR-486 | beg:171 | end:191 | pic:3' GAGCCCCGTCGAGTC-ATGTCCT 5'& || |.| || ||||||| &5' ------GCTGTTGAGCTACAGGA 3' |
Birc2 | mmu-miR-488 | beg:82 | end:101 | pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& ||| || .|||||| &5' GACATTCT-ACTCTCTTTCA- 3' |
Birc2 | mmu-miR-496 | beg:309 | end:327 | pic:3' CTCTAACCGGTACATTATGAGT 5'& ||||. |..|||||| &5' -----TGGCTC--TGGTACTCA 3' |
Birc2 | mmu-miR-532-5p | beg:427 | end:447 | pic:3' TGCCAGGATGTGAGTTCCGTAC 5'& | |.|| |||||.|| &5' --GTTTCTTTTA--AAGGCGTG 3' |
Birc2 | mmu-miR-582-3p | beg:64 | end:84 | pic:3' AACCCAAGTCAACAAGTTGTCC 5'& ||||| ||||.|||| &5' -----TTCAGCTCTTCAGCAGG 3' |
Birc2 | mmu-miR-665 | beg:232 | end:251 | pic:3' TCCCTGGAGTC--GGAGGACCA 5'& |.|||| |.||.||| &5' -----CTTCAGGACTTCTTGG- 3' |
Birc2 | mmu-miR-666-5p | beg:204 | end:228 | pic:3' CCGAGAGTGTCGAC---ACGGGCGA 5'& || . ||.|| |||..||| &5' -GCA---GGAGTTGGGATGCTTGCT 3' |
Birc2 | mmu-miR-669j | beg:456 | end:479 | pic:3' ACAAACGTACACTCATATACGT 5'& ||| |||| | |.|||||| &5' TGTGTGCAG--GGATGTATGCA 3' |
Birc2 | mmu-miR-693-3p | beg:26 | end:43 | pic:3' AATGTCGGTGTAGACTTTCGACG 5'& ||||| .||||||. &5' --------ACATCA-GAAGCTGT 3' |
Birc2 | mmu-miR-697 | beg:459 | end:474 | pic:3' AGAGGTGTCCTGGTCCTACAA 5'& | | .|||||| &5' --------GTGCAGGGATGT- 3' |
Birc2 | mmu-miR-876-5p | beg:283 | end:303 | pic:3' ATCACTAAGTGTCTCTTTAGGT 5'& |||. .| |||||||| &5' --GTGGA--GCTCAGAAATCC- 3' |
Birc2 | mmu-miR-883a-5p | beg:308 | end:330 | pic:3' CATTGACGATGAAGAGAGTCGT 5'& ||..|| ||. | |||||.| &5' GTGGCT-CTGGTA--CTCAGTA 3' |
Birc2 | mmu-miR-883b-5p | beg:311 | end:330 | pic:3' ACTGACGATGGGTAAGAGTCAT 5'& ||| |. .| ||||||| &5' -----GCT-CTGGTACTCAGTA 3' |
Birc2 | mmu-miR-93star | beg:68 | end:83 | pic:3' GCCCTTCACGATCGAGTCGTCA 5'& ||| .||||||| &5' --------GCTC-TTCAGCAG- 3' |