Ubr4
DNA & RNA Element - circBase
circRNA IDChromStartEndStrand
mmu_circ_0001288chr4138946754138949334+
mmu_circ_0001287chr4138944282138962563+
DNA & RNA Element - miRTarBase
Target Gene (Entrez ID)miRTarBase IDmiRNASpecies (miRNA)Target GeneSpecies (Target Gene)ExperimentsSupport TypeReferences (PMID)
MIRT014475mmu-miR-149-5pMus musculusUbr469116Mus musculusSequencingFunctional MTI (Weak)19536157
MIRT013748mmu-miR-24-3pMus musculusUbr469116Mus musculusSequencingFunctional MTI (Weak)19536157
MIRT012356mmu-miR-19b-3pMus musculusUbr469116Mus musculusSequencingFunctional MTI (Weak)19536157
MIRT596390mmu-miR-463-3pMus musculusUbr469116Mus musculusHITS-CLIPFunctional MTI (Weak)23142080
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0004529mmu-miR-125b*69116Ubr4uccagggUUCUUGGACUGAAca | ||| |||||| gaaauaaAUGAA--UGACUUag316270289[mm9:4:139045416-139045435:+]0.63681240-9.06-0.1479
MIMAT0000152mmu-miR-140*69116Ubr4ggcACCAA-GAUGG--GACA-CCAu ||||| ||:|| |||| ||| gcuUGGUUACUGCCUGCUGUAGGUu2195781[mm9:4:138953487-138953511:+]0.50051280-22.28-0.1343
MIMAT0000378mmu-miR-30069116Ubr4cuuCUCUCGAACGGGAACGUAu || |||| | ||||||| auuGA-AGCUAG--CUUGCAUu2202038[mm9:4:139045166-139045184:+]0.48081507-14.39-0.1949
MIMAT0004653mmu-miR-342-5p69116Ubr4gaguuagugucuAUCGUGGGGa ||||||||| cggaugcugcauUAGCACCCCc21179100[mm9:4:139045225-139045246:+]0.49081507-19.58-0.4546
MIMAT0004691mmu-miR-382*69116Ubr4uuuuucacaacaggcACUUACu |||||| acaucuugaaauaaaUGAAUGa28263284[mm9:4:139045409-139045430:+]0.63681206-7.50-0.3649
MIMAT0003731mmu-miR-671-5p69116Ubr4gaGGUCGGGGAGGUCCCGAAGGa :::| :|| :| ||||||| guUUGGGGUCUGUA-GGCUUCCu222125146[mm9:4:139045271-139045292:+]0.63681477-21.61-0.6691
MIMAT0003894mmu-miR-764-5p69116Ubr4uccuccUGUA-CACUCGUGg :||| ||||||| gccuauGCAUACUGAGCACa21490109[mm9:4:138953520-138953539:+]0.50041447-13.06-0.4371
MIMAT0003896mmu-miR-76369116Ubr4cggugaccaAGAAGGGUCGACc |||| ||||||| gaggacuccUCUU-CCAGCUGu214149169[mm9:4:138953579-138953599:+]0.50341517-17.38-0.9603
MIMAT0003896mmu-miR-76369116Ubr4cggugaccaagaagGGUCGACc ||||||| cucgagcauuaaagCCAGCUGg29114135[mm9:4:138953544-138953565:+]0.50031407-18.17-0.2208
MIMAT0003739mmu-miR-673-5p69116Ubr4gagGUUCCUGG--UCUCGACACUc :| | ||| :||||||||| cuaUACGUACCUAGGAGCUGUGAg220215238[mm9:4:139045361-139045384:+]0.63681587-23.85-0.2465
MIMAT0003741mmu-miR-674*69116Ubr4aacaagaCUCUACCCUCGACAc ||| || ||||||| uaccuagGAGCUGUGAGCUGUc216222243[mm9:4:139045368-139045389:+]0.63681597-17.81-0.2857
MIMAT0003458mmu-miR-68169116Ubr4ucgACGGACGGUCGC-UCCGAc ||: |||: ||| ||||| gugUGUGUGCU-GCGCAGGCUa219161181[mm9:4:139045307-139045327:+]0.63681240-20.64-0.5302
MIMAT0003497mmu-miR-70769116Ubr4gcauccguucgccgUACUGAc |||||| cuugaaauaaaugaAUGACUu28267287[mm9:4:139045413-139045433:+]0.63681206-7.77-0.1283
MIMAT0003499mmu-miR-70969116Ubr4aggaggaCG-GAGACGGAGg || | ||||||| auacugaGCACACUGCCUCg21398117[mm9:4:138953528-138953547:+]0.50041437-17.25-0.2493
MIMAT0003502mmu-miR-71269116Ubr4ccauggcgggcccACUUCCUc ||||||| uagcucaagccauUGAAGGAc29194214[mm9:4:139045340-139045360:+]0.63681407-13.27-0.7213
MIMAT0004236mmu-miR-74169116Ubr4agauguaucuuaccGUAGAGAGu |||||||| auucuccccucauuCAUCUCUCc2103658[mm9:4:139045182-139045204:+]0.48581457-12.37-0.1763
MIMAT0004863mmu-miR-22069116Ubr4uucAC-AGACUGUG-ACAC-CACc || ||| ||| |||| ||| uccUGUUCUAUCACGUGUGUGUGu219143166[mm9:4:139045289-139045312:+]0.63681200-14.94-0.3711
MIMAT0004883mmu-miR-466g69116Ubr4acacACACGUACACAGACAUa | || | |||||||| aggcUAUGAAGUUGUCUGUAg218176196[mm9:4:139045322-139045342:+]0.63681537-13.12-0.6906
MIMAT0004883mmu-miR-466g69116Ubr4acaCACACGUA-CACAGACAUa ||| |: | | ||||||| ggaGUG-GUUUGGGGUCUGUAg219119139[mm9:4:139045265-139045285:+]0.63681477-16.17-0.1192
MIMAT0004862mmu-miR-877*69116Ubr4acccuccucccucuUCUCCUGu ||||||| ggcuucucugugucAGAGGACu29134155[mm9:4:138953564-138953585:+]0.50191407-11.14-0.1505
MIMAT0005831mmu-miR-669k69116Ubr4aacguacgCACAUAUACGUAu | | ||||||| uuguugagGGGCCUAUGCAUa21480100[mm9:4:138953510-138953530:+]0.50041417-11.59-0.1893
MIMAT0005834mmu-miR-466i69116Ubr4aucacacauacACACACACAUa || ||||||| cccggccagcuUGAGUGUGUAc212243264[mm9:4:139045389-139045410:+]0.63681477-9.54-0.8178
MIMAT0005842mmu-miR-669h-3p69116Ubr4acacguacaCACAUAUACGUAu | | ||||||| guuguugagGGGCCUAUGCAUa21479100[mm9:4:138953509-138953530:+]0.50041417-9.99-0.1893
MIMAT0009407mmu-miR-194269116Ubr4guUGGUCU-ACUUCUGUAGAcu :|: || || : |||||| caGCUUGAGUGUGUACAUCUug320249270[mm9:4:139045395-139045416:+]0.63681300-13.13-0.1306
MIMAT0009408mmu-miR-194369116Ubr4agGUCCACG-GGUCUAGGAGGGAa || || || |||||||| ugCAUUAGCACCCCCUCCUCCCUc22286109[mm9:4:139045232-139045255:+]0.43591487-22.66-0.1280
MIMAT0009412mmu-miR-1946a69116Ubr4uuuucacaCACGGUGGU-GAC-GGGCCGa | ||::: | ||| |||||| guaccuagGAGCUGUGAGCUGUCCCGGCc220221249[mm9:4:139045367-139045395:+]0.63681226-25.73-0.5029
MIMAT0009440mmu-miR-196769116Ubr4cguAGAAGAGGGGUCCU-AGGAGu ||| : :| |||| ||||| uucUCUGUGUCAGAGGACUCCUCu221137160[mm9:4:138953567-138953590:+]0.50191240-19.93-0.1216
MIMAT0009443mmu-miR-1946b69116Ubr4uuuucGUACACGGUGGU-GAC-GGGCCg :| | ||::: | ||| ||||| guaccUAGGAGCUGUGAGCUGUCCCGGc222221248[mm9:4:139045367-139045394:+]0.63681200-30.15-0.4334
MIMAT0011214mmu-miR-213869116Ubr4uaagGCGGUUCGG-GCAAGGGAa :||:: ||: :||||||| ---aUGCUGUGCUGUGUUCCCUg219120[mm9:4:138953431-138953450:+]0.49781537-20.84-0.1471
MIMAT0012774mmu-miR-66469116Ubr4auccgaccCCUCAUUUACUUAu | | ||||||||| uacaucuuGAAAUAAAUGAAUg215262283[mm9:4:139045408-139045429:+]0.63681547-8.78-1.2210
MIMAT0015645mmu-miR-347369116Ubr4ccGACUCGGUAGAGAGGu || | :||||||||| ccCUCAUUCAUCUCUCCg2174259[mm9:4:139045188-139045205:+]0.49081607-19.82-0.3834
MIMAT0000147mmu-miR-135a69116Ubr4aguguauccuuauuuUUCGGUAu ||||||| aguugucuguagcucAAGCCAUu29185207[mm9:4:139045331-139045353:+]0.63681407-10.79-0.5067
MIMAT0000163mmu-miR-15369116Ubr4cuAGUGAAAACACUGAUACGUu |:::| | | ||||||| ggUUGUUGAGGGGCCUAUGCAu2217899[mm9:4:138953508-138953529:+]0.50051487-13.67-0.1700
MIMAT0000165mmu-miR-15569116Ubr4uggGGAUAGUGUUA---A--UCGUAAUu |: | |||| | | ||||||| auaCUGAGCACACUGCCUCGAGCAUUAa22198125[mm9:4:138953528-138953555:+]0.50041427-14.21-0.2658
MIMAT0000210mmu-miR-181a69116Ubr4ugAGUGGCUGUCGCAACUUACaa || ::|| | |||||| caUC-UUGAAAUAAAUGAAUGac322264285[mm9:4:139045410-139045431:+]0.63681230-8.73-0.2200
MIMAT0000214mmu-miR-18569116Ubr4aguccuugacggaaAGAGAGGu ||||||| ucuccccucauucaUCUCUCCg293859[mm9:4:139045184-139045205:+]0.48581407-16.16-0.3808
MIMAT0000247mmu-miR-14369116Ubr4cucGAUGUCACGAAGUAGAGu || | | |||||||| auuCUCCCCUCAUUCAUCUCu2193656[mm9:4:139045182-139045202:+]0.48581507-11.10-0.5187
MIMAT0000381mmu-miR-34c69116Ubr4cguuagucGAUUGAUGUGACGGa ||:| |||||||| uaugcauaCUGAGCACACUGCCu21693115[mm9:4:138953523-138953545:+]0.50041557-20.82-0.2554
MIMAT0000382mmu-miR-34b-5p69116Ubr4uguuagucGAUUAAUGUGACGGa ||:| |||||||| uaugcauaCUGAGCACACUGCCu21693115[mm9:4:138953523-138953545:+]0.50041557-21.05-0.2554
MIMAT0000542mmu-miR-34a69116Ubr4uguuggucGAUUC-UGUGACGGu ||:|| |||||||| uaugcauaCUGAGCACACUGCCu21593115[mm9:4:138953523-138953545:+]0.50041577-21.57-0.2577
MIMAT0000546mmu-miR-10369116Ubr4agUAUCGGGACAUG-UUACGACGa || ||| || :||||||| ucAUUUCCC-CCACGGAUGCUGCa2226789[mm9:4:139045213-139045235:+]0.49081467-20.17-0.2281
MIMAT0000612mmu-miR-135b69116Ubr4aguguauccuuacuuUUCGGUAu ||||||| aguugucuguagcucAAGCCAUu29185207[mm9:4:139045331-139045353:+]0.63681407-11.97-0.5067
MIMAT0000647mmu-miR-10769116Ubr4acUAUCGGGACAUG-UUACGACGa || ||| || :||||||| ucAUUUCCC-CCACGGAUGCUGCa2226789[mm9:4:139045213-139045235:+]0.49081467-16.89-0.2281
MIMAT0000661mmu-miR-21469116Ubr4ugaCGGA-CAGACACGGACGACa ||:| ||: ||||||||| agcGCUUGGUUACUGCCUGCUGu2205476[mm9:4:138953484-138953506:+]0.50051627-25.91-0.2629
MIMAT0000662mmu-miR-216a69116Ubr4agugucaacggucgACUCUAAu ||||||| cauccccauggaaaUGAGAUUg29223[mm9:4:139045148-139045169:+]0.54221407-11.93-0.5432
MIMAT0000671mmu-miR-22469116Ubr4uuGCCUUGGUGA-UCACUGAAu :| ||: | | | |||||| cuUGAAAUAAAUGAAUGACUUa220267288[mm9:4:139045413-139045434:+]0.63681226-9.36-0.2085
MIMAT0000673mmu-miR-181b69116Ubr4uggGUGG--CUGUCGUUACUUACaa ||:| || | |||||||| guaCAUCUUGAAAUAAAUGAAUGac321261285[mm9:4:139045407-139045431:+]0.63681390-13.37-0.2200
MIMAT0000674mmu-miR-181c69116Ubr4ugaguggcuguccaACUUACaa |||||| caucuugaaauaaaUGAAUGac39264285[mm9:4:139045410-139045431:+]0.63681200-8.34-0.2220
MIMAT0000741mmu-miR-37769116Ubr4uguuuucAACGGAAACACACUa || | ||||||| acuccucUUCCAGCUGUGUGAa216153174[mm9:4:138953583-138953604:+]0.50341437-10.79-0.3221
MIMAT0001542mmu-miR-449a69116Ubr4ugguCGAUUG--UUAUGUGACGGu || || |: |||||||| cuauGCAUACUGAGCACACUGCCu21992115[mm9:4:138953522-138953545:+]0.50041497-16.41-0.2554
MIMAT0003893mmu-miR-76169116Ubr4acacAGUCAAAGUGGGACGACg |::||| | ||||||| gcgcUUGGUUACUGCCUGCUGu2195576[mm9:4:138953485-138953506:+]0.50051587-16.04-0.2606
MIMAT0003460mmu-miR-449c69116Ubr4ggucGA-UCGUUACGUGACGGa || |||| ||||||| cauaCUGAGCA---CACUGCCu21897115[mm9:4:138953527-138953545:+]0.50041447-19.31-0.2341
MIMAT0004324mmu-miR-181d69116Ubr4uggGUGG--CUGUUGUUACUUACaa ||:| || | |||||||| guaCAUCUUGAAAUAAAUGAAUGac321261285[mm9:4:139045407-139045431:+]0.63681390-13.37-0.2200
MIMAT0004847mmu-miR-88269116Ubr4ugauuacGCGAUUGAGAGAGGa | :| | ||||||| cuccccuCAUUCA-UCUCUCCg2163959[mm9:4:139045185-139045205:+]0.49081417-11.42-0.3664
MIMAT0005447mmu-miR-449b69116Ubr4cggucGAUUGUUGUGACGGa ||:| |||||||| gcauaCUGAGCACACUGCCu21696115[mm9:4:138953526-138953545:+]0.50041557-20.16-0.2554
MIMAT0004936mmu-miR-87369116Ubr4ucCUCUGAGUGUUC-AAGGACg |:|:: :::|:| |||||| uuGGGGUCUGUAGGCUUCCUGu220127148[mm9:4:139045273-139045294:+]0.63681236-19.62-0.5566
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G058267Ubr4Mus musculus69116
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Ubr4RAID00089075mmu-miR-34b-5pmiRNAMIMAT0000382Ubr4mRNA69116Prediction0.1828
Ubr4RAID00093835mmu-miR-185-5pmiRNAMIMAT0000214Ubr4mRNA69116Prediction0.1828
Ubr4RAID00106558mmu-miR-34a-5pmiRNAMIMAT0000542Ubr4mRNA69116Prediction0.1828
Ubr4RAID00202622mmu-miR-103-3pmiRNAMIMAT0000546Ubr4mRNA69116Prediction0.2202
Ubr4RAID00296362mmu-miR-449a-5pmiRNAMIMAT0001542Ubr4mRNA69116Prediction0.1828
Ubr4RAID00371515mmu-miR-7116-3pmiRNAMIMAT0028130Ubr4mRNA69116Prediction0.1828
Ubr4RAID00402011mmu-miR-7070-5pmiRNAMIMAT0028046Ubr4mRNA69116Prediction0.1828
Ubr4RAID00486260mmu-miR-181d-5pmiRNAMIMAT0004324Ubr4mRNA69116Prediction0.1828
Ubr4RAID00574176mmu-miR-6965-5pmiRNAMIMAT0027830Ubr4mRNA69116Prediction0.1828
Ubr4RAID00938790mmu-miR-377-3pmiRNAMIMAT0000741Ubr4mRNA69116Prediction0.1828
Ubr4RAID01108179mmu-miR-24-3pmiRNAMIMAT0000219Ubr4mRNA69116NGS (Next Generation Sequencing)0.5483
Ubr4RAID01109904mmu-miR-149-5pmiRNAMIMAT0000159Ubr4mRNA69116NGS (Next Generation Sequencing)0.5483
Ubr4RAID01122441mmu-miR-7235-5pmiRNAMIMAT0028438Ubr4mRNA69116Prediction0.1828
Ubr4RAID01137234mmu-miR-143-3pmiRNAMIMAT0000247Ubr4mRNA69116Prediction0.1828
Ubr4RAID01292062mmu-miR-107-3pmiRNAMIMAT0000647Ubr4mRNA69116Prediction0.2381
Ubr4RAID01318612mmu-miR-6419miRNAMIMAT0025175Ubr4mRNA69116Prediction0.1828
Ubr4RAID01361642mmu-miR-376b-3pmiRNAMIMAT0001092Ubr4mRNA69116Prediction0.1828
Ubr4RAID01428756mmu-miR-153-3pmiRNAMIMAT0000163Ubr4mRNA69116Prediction0.1828
Ubr4RAID01445267mmu-miR-7047-5pmiRNAMIMAT0027998Ubr4mRNA69116Prediction0.1828
Ubr4RAID01483379mmu-miR-671-5pmiRNAMIMAT0003731Ubr4mRNA69116Prediction0.1828
Ubr4RAID01524277mmu-miR-466gmiRNAMIMAT0004883Ubr4mRNA69116Prediction0.1828
Ubr4RAID01547013mmu-miR-449c-5pmiRNAMIMAT0003460Ubr4mRNA69116Prediction0.1828
Ubr4RAID01558122mmu-miR-3103-5pmiRNAMIMAT0014937Ubr4mRNA69116Prediction0.1828
Ubr4RAID01693225mmu-miR-181b-5pmiRNAMIMAT0000673Ubr4mRNA69116Prediction0.1828
Ubr4RAID01775853mmu-miR-216a-5pmiRNAMIMAT0000662Ubr4mRNA69116Prediction0.1828
Ubr4RAID02189565mmu-miR-463-3pmiRNAMIMAT0004758Ubr4mRNA69116CLIP-seq0.5483
Ubr4RAID02262111mmu-miR-761miRNAMIMAT0003893Ubr4mRNA69116Prediction0.1828
Ubr4RAID02482675mmu-miR-7666-3pmiRNAMIMAT0029839Ubr4mRNA69116Prediction0.1828
Ubr4RAID02500492mmu-miR-155-5pmiRNAMIMAT0000165Ubr4mRNA69116Prediction0.1828
Ubr4RAID02595432mmu-miR-802-3pmiRNAMIMAT0017240Ubr4mRNA69116Prediction0.1828
Ubr4RAID02660866mmu-miR-135b-5pmiRNAMIMAT0000612Ubr4mRNA69116Prediction0.1828
Ubr4RAID02661678mmu-miR-181a-5pmiRNAMIMAT0000210Ubr4mRNA69116Prediction0.1828
Ubr4RAID02666454mmu-miR-760-3pmiRNAMIMAT0003898Ubr4mRNA69116Prediction0.1828
Ubr4RAID02683177mmu-miR-6951-3pmiRNAMIMAT0027803Ubr4mRNA69116Prediction0.1828
Ubr4RAID02685299mmu-miR-6927-5pmiRNAMIMAT0027754Ubr4mRNA69116Prediction0.1828
Ubr4RAID02808376mmu-miR-181c-5pmiRNAMIMAT0000674Ubr4mRNA69116Prediction0.1828
Ubr4RAID02867836mmu-miR-882miRNAMIMAT0004847Ubr4mRNA69116Prediction0.1828
Ubr4RAID02881032mmu-miR-214-3pmiRNAMIMAT0000661Ubr4mRNA69116Prediction0.1828
Ubr4RAID02894565mmu-miR-19b-3pmiRNAMIMAT0000513Ubr4mRNA69116NGS (Next Generation Sequencing)0.5483
Ubr4RAID02938791mmu-miR-7073-5pmiRNAMIMAT0028052Ubr4mRNA69116Prediction0.1828
Ubr4RAID03236581mmu-miR-7072-5pmiRNAMIMAT0028050Ubr4mRNA69116Prediction0.1828
Ubr4RAID03355529mmu-miR-135a-5pmiRNAMIMAT0000147Ubr4mRNA69116Prediction0.1828
Ubr4RAID03409775mmu-miR-449bmiRNAMIMAT0005447Ubr4mRNA69116Prediction0.1828
Ubr4RAID03425533mmu-miR-7024-5pmiRNAMIMAT0027952Ubr4mRNA69116Prediction0.1828
Ubr4RAID03496633mmu-miR-224-5pmiRNAMIMAT0000671Ubr4mRNA69116Prediction0.2202
Ubr4RAID03576393mmu-miR-466qmiRNAMIMAT0020631Ubr4mRNA69116Prediction0.1828
Ubr4RAID03700971mmu-miR-7023-5pmiRNAMIMAT0027950Ubr4mRNA69116Prediction0.1828
Ubr4RAID03728892mmu-miR-7060-5pmiRNAMIMAT0028024Ubr4mRNA69116Prediction0.1828
Ubr4RAID03837706mmu-miR-7119-5pmiRNAMIMAT0028135Ubr4mRNA69116Prediction0.1828
Ubr4RAID03894840mmu-miR-6941-5pmiRNAMIMAT0027782Ubr4mRNA69116Prediction0.1828
Ubr4RAID03969650mmu-miR-873a-5pmiRNAMIMAT0004936Ubr4mRNA69116Prediction0.1828
Ubr4RAID03999623mmu-miR-34c-5pmiRNAMIMAT0000381Ubr4mRNA69116Prediction0.1828