DNA & RNA Element - microRNA |
Mirbase Acc | miRNA Name | Gene ID | Gene Symbol | miRNA Alignment | Alignment | Gene Alignment | miRNA Start | miRNA End | Gene Start | Gene End | Genome Coordinates | Conservation | Align Score | Seed Cat | Energy | mirSVR Score |
MIMAT0004529 | mmu-miR-125b* | 69116 | Ubr4 | uccagggUUCUUGGACUGAAca | | ||| |||||| | gaaauaaAUGAA--UGACUUag | 3 | 16 | 270 | 289 | [mm9:4:139045416-139045435:+] | 0.6368 | 124 | 0 | -9.06 | -0.1479 |
MIMAT0000152 | mmu-miR-140* | 69116 | Ubr4 | ggcACCAA-GAUGG--GACA-CCAu | ||||| ||:|| |||| ||| | gcuUGGUUACUGCCUGCUGUAGGUu | 2 | 19 | 57 | 81 | [mm9:4:138953487-138953511:+] | 0.5005 | 128 | 0 | -22.28 | -0.1343 |
MIMAT0000378 | mmu-miR-300 | 69116 | Ubr4 | cuuCUCUCGAACGGGAACGUAu | || |||| | ||||||| | auuGA-AGCUAG--CUUGCAUu | 2 | 20 | 20 | 38 | [mm9:4:139045166-139045184:+] | 0.4808 | 150 | 7 | -14.39 | -0.1949 |
MIMAT0004653 | mmu-miR-342-5p | 69116 | Ubr4 | gaguuagugucuAUCGUGGGGa | ||||||||| | cggaugcugcauUAGCACCCCc | 2 | 11 | 79 | 100 | [mm9:4:139045225-139045246:+] | 0.4908 | 150 | 7 | -19.58 | -0.4546 |
MIMAT0004691 | mmu-miR-382* | 69116 | Ubr4 | uuuuucacaacaggcACUUACu | |||||| | acaucuugaaauaaaUGAAUGa | 2 | 8 | 263 | 284 | [mm9:4:139045409-139045430:+] | 0.6368 | 120 | 6 | -7.50 | -0.3649 |
MIMAT0003731 | mmu-miR-671-5p | 69116 | Ubr4 | gaGGUCGGGGAGGUCCCGAAGGa | :::| :|| :| ||||||| | guUUGGGGUCUGUA-GGCUUCCu | 2 | 22 | 125 | 146 | [mm9:4:139045271-139045292:+] | 0.6368 | 147 | 7 | -21.61 | -0.6691 |
MIMAT0003894 | mmu-miR-764-5p | 69116 | Ubr4 | uccuccUGUA-CACUCGUGg | :||| ||||||| | gccuauGCAUACUGAGCACa | 2 | 14 | 90 | 109 | [mm9:4:138953520-138953539:+] | 0.5004 | 144 | 7 | -13.06 | -0.4371 |
MIMAT0003896 | mmu-miR-763 | 69116 | Ubr4 | cggugaccaAGAAGGGUCGACc | |||| ||||||| | gaggacuccUCUU-CCAGCUGu | 2 | 14 | 149 | 169 | [mm9:4:138953579-138953599:+] | 0.5034 | 151 | 7 | -17.38 | -0.9603 |
MIMAT0003896 | mmu-miR-763 | 69116 | Ubr4 | cggugaccaagaagGGUCGACc | ||||||| | cucgagcauuaaagCCAGCUGg | 2 | 9 | 114 | 135 | [mm9:4:138953544-138953565:+] | 0.5003 | 140 | 7 | -18.17 | -0.2208 |
MIMAT0003739 | mmu-miR-673-5p | 69116 | Ubr4 | gagGUUCCUGG--UCUCGACACUc | :| | ||| :||||||||| | cuaUACGUACCUAGGAGCUGUGAg | 2 | 20 | 215 | 238 | [mm9:4:139045361-139045384:+] | 0.6368 | 158 | 7 | -23.85 | -0.2465 |
MIMAT0003741 | mmu-miR-674* | 69116 | Ubr4 | aacaagaCUCUACCCUCGACAc | ||| || ||||||| | uaccuagGAGCUGUGAGCUGUc | 2 | 16 | 222 | 243 | [mm9:4:139045368-139045389:+] | 0.6368 | 159 | 7 | -17.81 | -0.2857 |
MIMAT0003458 | mmu-miR-681 | 69116 | Ubr4 | ucgACGGACGGUCGC-UCCGAc | ||: |||: ||| ||||| | gugUGUGUGCU-GCGCAGGCUa | 2 | 19 | 161 | 181 | [mm9:4:139045307-139045327:+] | 0.6368 | 124 | 0 | -20.64 | -0.5302 |
MIMAT0003497 | mmu-miR-707 | 69116 | Ubr4 | gcauccguucgccgUACUGAc | |||||| | cuugaaauaaaugaAUGACUu | 2 | 8 | 267 | 287 | [mm9:4:139045413-139045433:+] | 0.6368 | 120 | 6 | -7.77 | -0.1283 |
MIMAT0003499 | mmu-miR-709 | 69116 | Ubr4 | aggaggaCG-GAGACGGAGg | || | ||||||| | auacugaGCACACUGCCUCg | 2 | 13 | 98 | 117 | [mm9:4:138953528-138953547:+] | 0.5004 | 143 | 7 | -17.25 | -0.2493 |
MIMAT0003502 | mmu-miR-712 | 69116 | Ubr4 | ccauggcgggcccACUUCCUc | ||||||| | uagcucaagccauUGAAGGAc | 2 | 9 | 194 | 214 | [mm9:4:139045340-139045360:+] | 0.6368 | 140 | 7 | -13.27 | -0.7213 |
MIMAT0004236 | mmu-miR-741 | 69116 | Ubr4 | agauguaucuuaccGUAGAGAGu | |||||||| | auucuccccucauuCAUCUCUCc | 2 | 10 | 36 | 58 | [mm9:4:139045182-139045204:+] | 0.4858 | 145 | 7 | -12.37 | -0.1763 |
MIMAT0004863 | mmu-miR-220 | 69116 | Ubr4 | uucAC-AGACUGUG-ACAC-CACc | || ||| ||| |||| ||| | uccUGUUCUAUCACGUGUGUGUGu | 2 | 19 | 143 | 166 | [mm9:4:139045289-139045312:+] | 0.6368 | 120 | 0 | -14.94 | -0.3711 |
MIMAT0004883 | mmu-miR-466g | 69116 | Ubr4 | acacACACGUACACAGACAUa | | || | |||||||| | aggcUAUGAAGUUGUCUGUAg | 2 | 18 | 176 | 196 | [mm9:4:139045322-139045342:+] | 0.6368 | 153 | 7 | -13.12 | -0.6906 |
MIMAT0004883 | mmu-miR-466g | 69116 | Ubr4 | acaCACACGUA-CACAGACAUa | ||| |: | | ||||||| | ggaGUG-GUUUGGGGUCUGUAg | 2 | 19 | 119 | 139 | [mm9:4:139045265-139045285:+] | 0.6368 | 147 | 7 | -16.17 | -0.1192 |
MIMAT0004862 | mmu-miR-877* | 69116 | Ubr4 | acccuccucccucuUCUCCUGu | ||||||| | ggcuucucugugucAGAGGACu | 2 | 9 | 134 | 155 | [mm9:4:138953564-138953585:+] | 0.5019 | 140 | 7 | -11.14 | -0.1505 |
MIMAT0005831 | mmu-miR-669k | 69116 | Ubr4 | aacguacgCACAUAUACGUAu | | | ||||||| | uuguugagGGGCCUAUGCAUa | 2 | 14 | 80 | 100 | [mm9:4:138953510-138953530:+] | 0.5004 | 141 | 7 | -11.59 | -0.1893 |
MIMAT0005834 | mmu-miR-466i | 69116 | Ubr4 | aucacacauacACACACACAUa | || ||||||| | cccggccagcuUGAGUGUGUAc | 2 | 12 | 243 | 264 | [mm9:4:139045389-139045410:+] | 0.6368 | 147 | 7 | -9.54 | -0.8178 |
MIMAT0005842 | mmu-miR-669h-3p | 69116 | Ubr4 | acacguacaCACAUAUACGUAu | | | ||||||| | guuguugagGGGCCUAUGCAUa | 2 | 14 | 79 | 100 | [mm9:4:138953509-138953530:+] | 0.5004 | 141 | 7 | -9.99 | -0.1893 |
MIMAT0009407 | mmu-miR-1942 | 69116 | Ubr4 | guUGGUCU-ACUUCUGUAGAcu | :|: || || : |||||| | caGCUUGAGUGUGUACAUCUug | 3 | 20 | 249 | 270 | [mm9:4:139045395-139045416:+] | 0.6368 | 130 | 0 | -13.13 | -0.1306 |
MIMAT0009408 | mmu-miR-1943 | 69116 | Ubr4 | agGUCCACG-GGUCUAGGAGGGAa | || || || |||||||| | ugCAUUAGCACCCCCUCCUCCCUc | 2 | 22 | 86 | 109 | [mm9:4:139045232-139045255:+] | 0.4359 | 148 | 7 | -22.66 | -0.1280 |
MIMAT0009412 | mmu-miR-1946a | 69116 | Ubr4 | uuuucacaCACGGUGGU-GAC-GGGCCGa | | ||::: | ||| |||||| | guaccuagGAGCUGUGAGCUGUCCCGGCc | 2 | 20 | 221 | 249 | [mm9:4:139045367-139045395:+] | 0.6368 | 122 | 6 | -25.73 | -0.5029 |
MIMAT0009440 | mmu-miR-1967 | 69116 | Ubr4 | cguAGAAGAGGGGUCCU-AGGAGu | ||| : :| |||| ||||| | uucUCUGUGUCAGAGGACUCCUCu | 2 | 21 | 137 | 160 | [mm9:4:138953567-138953590:+] | 0.5019 | 124 | 0 | -19.93 | -0.1216 |
MIMAT0009443 | mmu-miR-1946b | 69116 | Ubr4 | uuuucGUACACGGUGGU-GAC-GGGCCg | :| | ||::: | ||| ||||| | guaccUAGGAGCUGUGAGCUGUCCCGGc | 2 | 22 | 221 | 248 | [mm9:4:139045367-139045394:+] | 0.6368 | 120 | 0 | -30.15 | -0.4334 |
MIMAT0011214 | mmu-miR-2138 | 69116 | Ubr4 | uaagGCGGUUCGG-GCAAGGGAa | :||:: ||: :||||||| | ---aUGCUGUGCUGUGUUCCCUg | 2 | 19 | 1 | 20 | [mm9:4:138953431-138953450:+] | 0.4978 | 153 | 7 | -20.84 | -0.1471 |
MIMAT0012774 | mmu-miR-664 | 69116 | Ubr4 | auccgaccCCUCAUUUACUUAu | | | ||||||||| | uacaucuuGAAAUAAAUGAAUg | 2 | 15 | 262 | 283 | [mm9:4:139045408-139045429:+] | 0.6368 | 154 | 7 | -8.78 | -1.2210 |
MIMAT0015645 | mmu-miR-3473 | 69116 | Ubr4 | ccGACUCGGUAGAGAGGu | || | :||||||||| | ccCUCAUUCAUCUCUCCg | 2 | 17 | 42 | 59 | [mm9:4:139045188-139045205:+] | 0.4908 | 160 | 7 | -19.82 | -0.3834 |
MIMAT0000147 | mmu-miR-135a | 69116 | Ubr4 | aguguauccuuauuuUUCGGUAu | ||||||| | aguugucuguagcucAAGCCAUu | 2 | 9 | 185 | 207 | [mm9:4:139045331-139045353:+] | 0.6368 | 140 | 7 | -10.79 | -0.5067 |
MIMAT0000163 | mmu-miR-153 | 69116 | Ubr4 | cuAGUGAAAACACUGAUACGUu | |:::| | | ||||||| | ggUUGUUGAGGGGCCUAUGCAu | 2 | 21 | 78 | 99 | [mm9:4:138953508-138953529:+] | 0.5005 | 148 | 7 | -13.67 | -0.1700 |
MIMAT0000165 | mmu-miR-155 | 69116 | Ubr4 | uggGGAUAGUGUUA---A--UCGUAAUu | |: | |||| | | ||||||| | auaCUGAGCACACUGCCUCGAGCAUUAa | 2 | 21 | 98 | 125 | [mm9:4:138953528-138953555:+] | 0.5004 | 142 | 7 | -14.21 | -0.2658 |
MIMAT0000210 | mmu-miR-181a | 69116 | Ubr4 | ugAGUGGCUGUCGCAACUUACaa | || ::|| | |||||| | caUC-UUGAAAUAAAUGAAUGac | 3 | 22 | 264 | 285 | [mm9:4:139045410-139045431:+] | 0.6368 | 123 | 0 | -8.73 | -0.2200 |
MIMAT0000214 | mmu-miR-185 | 69116 | Ubr4 | aguccuugacggaaAGAGAGGu | ||||||| | ucuccccucauucaUCUCUCCg | 2 | 9 | 38 | 59 | [mm9:4:139045184-139045205:+] | 0.4858 | 140 | 7 | -16.16 | -0.3808 |
MIMAT0000247 | mmu-miR-143 | 69116 | Ubr4 | cucGAUGUCACGAAGUAGAGu | || | | |||||||| | auuCUCCCCUCAUUCAUCUCu | 2 | 19 | 36 | 56 | [mm9:4:139045182-139045202:+] | 0.4858 | 150 | 7 | -11.10 | -0.5187 |
MIMAT0000381 | mmu-miR-34c | 69116 | Ubr4 | cguuagucGAUUGAUGUGACGGa | ||:| |||||||| | uaugcauaCUGAGCACACUGCCu | 2 | 16 | 93 | 115 | [mm9:4:138953523-138953545:+] | 0.5004 | 155 | 7 | -20.82 | -0.2554 |
MIMAT0000382 | mmu-miR-34b-5p | 69116 | Ubr4 | uguuagucGAUUAAUGUGACGGa | ||:| |||||||| | uaugcauaCUGAGCACACUGCCu | 2 | 16 | 93 | 115 | [mm9:4:138953523-138953545:+] | 0.5004 | 155 | 7 | -21.05 | -0.2554 |
MIMAT0000542 | mmu-miR-34a | 69116 | Ubr4 | uguuggucGAUUC-UGUGACGGu | ||:|| |||||||| | uaugcauaCUGAGCACACUGCCu | 2 | 15 | 93 | 115 | [mm9:4:138953523-138953545:+] | 0.5004 | 157 | 7 | -21.57 | -0.2577 |
MIMAT0000546 | mmu-miR-103 | 69116 | Ubr4 | agUAUCGGGACAUG-UUACGACGa | || ||| || :||||||| | ucAUUUCCC-CCACGGAUGCUGCa | 2 | 22 | 67 | 89 | [mm9:4:139045213-139045235:+] | 0.4908 | 146 | 7 | -20.17 | -0.2281 |
MIMAT0000612 | mmu-miR-135b | 69116 | Ubr4 | aguguauccuuacuuUUCGGUAu | ||||||| | aguugucuguagcucAAGCCAUu | 2 | 9 | 185 | 207 | [mm9:4:139045331-139045353:+] | 0.6368 | 140 | 7 | -11.97 | -0.5067 |
MIMAT0000647 | mmu-miR-107 | 69116 | Ubr4 | acUAUCGGGACAUG-UUACGACGa | || ||| || :||||||| | ucAUUUCCC-CCACGGAUGCUGCa | 2 | 22 | 67 | 89 | [mm9:4:139045213-139045235:+] | 0.4908 | 146 | 7 | -16.89 | -0.2281 |
MIMAT0000661 | mmu-miR-214 | 69116 | Ubr4 | ugaCGGA-CAGACACGGACGACa | ||:| ||: ||||||||| | agcGCUUGGUUACUGCCUGCUGu | 2 | 20 | 54 | 76 | [mm9:4:138953484-138953506:+] | 0.5005 | 162 | 7 | -25.91 | -0.2629 |
MIMAT0000662 | mmu-miR-216a | 69116 | Ubr4 | agugucaacggucgACUCUAAu | ||||||| | cauccccauggaaaUGAGAUUg | 2 | 9 | 2 | 23 | [mm9:4:139045148-139045169:+] | 0.5422 | 140 | 7 | -11.93 | -0.5432 |
MIMAT0000671 | mmu-miR-224 | 69116 | Ubr4 | uuGCCUUGGUGA-UCACUGAAu | :| ||: | | | |||||| | cuUGAAAUAAAUGAAUGACUUa | 2 | 20 | 267 | 288 | [mm9:4:139045413-139045434:+] | 0.6368 | 122 | 6 | -9.36 | -0.2085 |
MIMAT0000673 | mmu-miR-181b | 69116 | Ubr4 | uggGUGG--CUGUCGUUACUUACaa | ||:| || | |||||||| | guaCAUCUUGAAAUAAAUGAAUGac | 3 | 21 | 261 | 285 | [mm9:4:139045407-139045431:+] | 0.6368 | 139 | 0 | -13.37 | -0.2200 |
MIMAT0000674 | mmu-miR-181c | 69116 | Ubr4 | ugaguggcuguccaACUUACaa | |||||| | caucuugaaauaaaUGAAUGac | 3 | 9 | 264 | 285 | [mm9:4:139045410-139045431:+] | 0.6368 | 120 | 0 | -8.34 | -0.2220 |
MIMAT0000741 | mmu-miR-377 | 69116 | Ubr4 | uguuuucAACGGAAACACACUa | || | ||||||| | acuccucUUCCAGCUGUGUGAa | 2 | 16 | 153 | 174 | [mm9:4:138953583-138953604:+] | 0.5034 | 143 | 7 | -10.79 | -0.3221 |
MIMAT0001542 | mmu-miR-449a | 69116 | Ubr4 | ugguCGAUUG--UUAUGUGACGGu | || || |: |||||||| | cuauGCAUACUGAGCACACUGCCu | 2 | 19 | 92 | 115 | [mm9:4:138953522-138953545:+] | 0.5004 | 149 | 7 | -16.41 | -0.2554 |
MIMAT0003893 | mmu-miR-761 | 69116 | Ubr4 | acacAGUCAAAGUGGGACGACg | |::||| | ||||||| | gcgcUUGGUUACUGCCUGCUGu | 2 | 19 | 55 | 76 | [mm9:4:138953485-138953506:+] | 0.5005 | 158 | 7 | -16.04 | -0.2606 |
MIMAT0003460 | mmu-miR-449c | 69116 | Ubr4 | ggucGA-UCGUUACGUGACGGa | || |||| ||||||| | cauaCUGAGCA---CACUGCCu | 2 | 18 | 97 | 115 | [mm9:4:138953527-138953545:+] | 0.5004 | 144 | 7 | -19.31 | -0.2341 |
MIMAT0004324 | mmu-miR-181d | 69116 | Ubr4 | uggGUGG--CUGUUGUUACUUACaa | ||:| || | |||||||| | guaCAUCUUGAAAUAAAUGAAUGac | 3 | 21 | 261 | 285 | [mm9:4:139045407-139045431:+] | 0.6368 | 139 | 0 | -13.37 | -0.2200 |
MIMAT0004847 | mmu-miR-882 | 69116 | Ubr4 | ugauuacGCGAUUGAGAGAGGa | | :| | ||||||| | cuccccuCAUUCA-UCUCUCCg | 2 | 16 | 39 | 59 | [mm9:4:139045185-139045205:+] | 0.4908 | 141 | 7 | -11.42 | -0.3664 |
MIMAT0005447 | mmu-miR-449b | 69116 | Ubr4 | cggucGAUUGUUGUGACGGa | ||:| |||||||| | gcauaCUGAGCACACUGCCu | 2 | 16 | 96 | 115 | [mm9:4:138953526-138953545:+] | 0.5004 | 155 | 7 | -20.16 | -0.2554 |
MIMAT0004936 | mmu-miR-873 | 69116 | Ubr4 | ucCUCUGAGUGUUC-AAGGACg | |:|:: :::|:| |||||| | uuGGGGUCUGUAGGCUUCCUGu | 2 | 20 | 127 | 148 | [mm9:4:139045273-139045294:+] | 0.6368 | 123 | 6 | -19.62 | -0.5566 |