DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004529 mmu-miR-125b* 11993 Aup1 uccAGGGUUCUUG-GACUG-AACa || |||| | ||||| ||| acuUCGCAAGCCCUCUGACAUUGu 2 20 144 167 [mm9:6:83007235-83007258:+] 0.6636 126 0 -18.34 -0.4278 MIMAT0000376 mmu-miR-298 11993 Aup1 cccuucuuGUCGGGAGGAGACGg | || | ||||||| guccccgcCUGCAC-CCUCUGCc 2 16 89 110 [mm9:6:83007060-83007081:+] 0.6939 145 7 -21.28 -0.2525 MIMAT0000660 mmu-miR-181a-1* 11993 Aup1 ccauguuaGUUGCC---AGCUACCa ||| || ||||||| cucugcccCAAAGGCAUUCGAUGGg 2 15 104 128 [mm9:6:83007075-83007087,83007208-83007219:+] 0.6233 145 7 -15.10 -0.7340 MIMAT0004664 mmu-miR-214* 11993 Aup1 cguGUCGUUCACAUCUGUCCGu ||| :|| |||||||| auuCAGAGAG---AGACAGGCc 2 20 301 319 [mm9:6:83007495-83007513:+] 0.6886 151 7 -18.08 -0.4948 MIMAT0000742 mmu-miR-378* 11993 Aup1 uguguccuGGACCU---CAGUCCUc |||||: ||||||| caagucuuCCUGGGCCCGUCAGGAg 2 15 229 253 [mm9:6:83007320-83007344:+] 0.7558 149 7 -26.11 -0.1942 MIMAT0002889 mmu-miR-532-5p 11993 Aup1 ugccaGGAUGUGAGUUCCGUAc :||:| | ||||||| cacccUCUGCCCCAAAGGCAUu 2 18 100 121 [mm9:6:83007071-83007087,83007208-83007212:+] 0.6233 153 7 -14.74 -0.3448 MIMAT0003127 mmu-miR-484 11993 Aup1 uagcccuccCCUGACUCGGACu ||| ||||||| ggcccgucaGGA--GAGCCUGc 2 14 241 260 [mm9:6:83007332-83007351:+] 0.7558 142 7 -16.99 -0.2232 MIMAT0004187 mmu-miR-744 11993 Aup1 acGACAAUCGGGA-UC-GGGGCGu ||| :| :|| || |||||| caCUGAGGGAUCUCAGUCCCCGCc 2 21 74 97 [mm9:6:83007045-83007068:+] 0.6939 123 6 -22.89 -0.4920 MIMAT0003736 mmu-miR-670 11993 Aup1 aaguGGUGU-AUGUGAGUCCCua :|||| || |:|||||| aaucUCACAUUAAAUUCAGGGuu 3 19 117 139 [mm9:6:83007645-83007667:+] 0.6886 145 0 -22.69 -0.1273 MIMAT0003736 mmu-miR-670 11993 Aup1 aaguGGUGU-AUGUGAGUCCCua :|||| || |:|||||| aaucUCACAUUAAAUUCAGGGuu 3 19 451 473 [mm9:6:83007645-83007667:+] 0.6886 145 0 -22.69 -0.1042 MIMAT0003898 mmu-miR-760 11993 Aup1 aggggUGUC-UGGGUCUCGGc |::| |||||||||| acaggAUGGUACCCAGAGCCg 2 16 11 31 [mm9:6:83007539-83007559:+] 0.6886 158 7 -27.24 -0.5583 MIMAT0003898 mmu-miR-760 11993 Aup1 aggggUGUC-UGGGUCUCGGc |::| |||||||||| acaggAUGGUACCCAGAGCCg 2 16 345 365 [mm9:6:83007539-83007559:+] 0.6886 158 7 -27.24 -0.1337 MIMAT0003451 mmu-miR-677 11993 Aup1 agucuucgaUUAGUAGUGACUu |: ::||||||| caugccugaAGAUGUCACUGAg 2 14 59 80 [mm9:6:83007030-83007051:+] 0.6939 145 7 -15.91 -0.2048 MIMAT0003472 mmu-miR-693-5p 11993 Aup1 cuuuugaaagCCUACACCGAc || ||||||| ugcucgagggGGCUGUGGCUu 2 12 37 57 [mm9:6:83007008-83007028:+] 0.6939 147 7 -14.69 -0.2070 MIMAT0005448 mmu-miR-467b 11993 Aup1 guauaUGUACGUCCGUGA-AUg :|| ||||||||| || ggagcGCAAGCAGGCACUGUAu 2 17 262 283 [mm9:6:83007353-83007374:+] 0.7558 132 0 -18.59 -0.6702 MIMAT0003481 mmu-miR-695 11993 Aup1 aagucaguggauacGGGUUAGa ||||||| agggauggggcuccCCCAAUCu 2 9 100 121 [mm9:6:83007628-83007649:+] 0.6886 140 7 -15.75 -0.2881 MIMAT0003481 mmu-miR-695 11993 Aup1 aagucaguggauacGGGUUAGa ||||||| agggauggggcuccCCCAAUCu 2 9 434 455 [mm9:6:83007628-83007649:+] 0.6886 140 7 -15.75 -0.2415 MIMAT0003500 mmu-miR-710 11993 Aup1 gaguugagagggguUCUGAACc ||||||| aggacuggguguguAGACUUGa 2 9 3 24 [mm9:6:83006974-83006995:+] 0.6939 140 7 -10.66 -1.0502 MIMAT0003782 mmu-miR-676 11993 Aup1 ucgaGUUGUUGGAGUCCUGCc | | |:|| ||||||| guacCCAGAGCCGCAGGACGg 2 18 19 39 [mm9:6:83007547-83007567:+] 0.6886 157 7 -25.66 -0.1272 MIMAT0003782 mmu-miR-676 11993 Aup1 ucgaGUUGUUGGAGUCCUGCc | | |:|| ||||||| guacCCAGAGCCGCAGGACGg 2 18 353 373 [mm9:6:83007547-83007567:+] 0.6886 157 7 -25.66 -0.1256 MIMAT0003782 mmu-miR-676 11993 Aup1 ucgAGU--UGUUGGA-GUCCU-GCc ||| | |:||| ||||| || ccgUCAGGAGAGCCUGCAGGAGCGc 2 19 244 268 [mm9:6:83007335-83007359:+] 0.7558 120 0 -18.82 -0.5402 MIMAT0004237 mmu-miR-742 11993 Aup1 aaAUGGG-UCGUAC--CACCGAAAg |:|:| || : | |||||||| ccUGCUCGAGGGGGCUGUGGCUUUc 2 21 35 59 [mm9:6:83007006-83007030:+] 0.6939 150 7 -20.44 -0.1673 MIMAT0004850 mmu-miR-883b-5p 11993 Aup1 acugACGAUGGGU---AAGAGUCAu ||: ||: | ||||||| aagaUGUCACUGAGGGAUCUCAGUc 2 19 67 91 [mm9:6:83007038-83007062:+] 0.6939 141 7 -13.75 -0.2826 MIMAT0004868 mmu-miR-343 11993 Aup1 agACCCG-UGUACUUCCCUCu ||||: ::| ||||||| agUGGGUGGUAAAAAGGGAGg 2 19 82 102 [mm9:6:83007610-83007630:+] 0.6886 153 7 -20.10 -0.8156 MIMAT0004868 mmu-miR-343 11993 Aup1 agACCCG-UGUACUUCCCUCu ||||: ::| ||||||| agUGGGUGGUAAAAAGGGAGg 2 19 416 436 [mm9:6:83007610-83007630:+] 0.6886 153 7 -20.10 -0.7423 MIMAT0004940 mmu-miR-511 11993 Aup1 acucacGUCUCGUUUUCCGUa | | | ||||||| cacccuCUGCCCCAAAGGCAu 2 16 100 120 [mm9:6:83007071-83007087,83007208-83007211:+] 0.6233 143 7 -10.03 -0.2500 MIMAT0005834 mmu-miR-466i 11993 Aup1 aucacacauacACACACACAUa || ||||||| ----ccaggacUGGGUGUGUAg 2 12 1 18 [mm9:6:83006972-83006989:+] 0.6939 147 7 -9.97 -0.8304 MIMAT0005846 mmu-miR-467f 11993 Aup1 acauccacacACACACAUAUa || ||||||| aggcauucgaUGGGUGUAUAa 2 12 115 135 [mm9:6:83007086-83007087,83007208-83007226:+] 0.5880 147 7 -8.97 -0.6880 MIMAT0007863 mmu-miR-1902 11993 Aup1 uucAGU-ACGGAU-GACGU-GGAGa ||| | || : ||||| |||| aucUCAGUCCCCGCCUGCACCCUCu 2 20 83 107 [mm9:6:83007054-83007078:+] 0.6939 121 0 -21.99 -0.1256 MIMAT0007871 mmu-miR-1892 11993 Aup1 uaGGA-GGGAGGGCAGGGGUUUa ||| | | |:| ||||||| cgCCUGCACCCUCUGCCCCAAAg 2 21 94 116 [mm9:6:83007065-83007087:+] 0.6032 155 7 -25.88 -0.1170 MIMAT0007873 mmu-miR-1896 11993 Aup1 gaggagugggugguAGUCUCUc ||||||| ugcaagaaggagauUCAGAGAg 2 9 289 310 [mm9:6:83007380-83007388,83007492-83007504:+] 0.7222 140 7 -13.65 -0.8839 MIMAT0007875 mmu-miR-1898 11993 Aup1 cuaggggACAC-UUGGAACUGGa |||| |: ||||||| gacugggUGUGUAGACUUGACCa 2 16 5 27 [mm9:6:83006976-83006998:+] 0.6939 154 7 -16.65 -1.2220 MIMAT0009399 mmu-miR-1935 11993 Aup1 ucucuaGGCGGUCGGAGACGGa || || |||||||| uccccgCCUGCACCCUCUGCCc 2 17 90 111 [mm9:6:83007061-83007082:+] 0.6939 156 7 -26.88 -0.5630 MIMAT0009413 mmu-miR-1947 11993 Aup1 gucGUGAGUCGAUCGAG-CAGGa |||| || | ||| |||| uguCACUGAGGGAUCUCAGUCCc 2 20 71 93 [mm9:6:83007042-83007064:+] 0.6939 127 0 -18.98 -0.2227 MIMAT0009436 mmu-miR-1963 11993 Aup1 cuuccggaguaCUAGAG-CAGGGu |||||| ||||| ugucacugaggGAUCUCAGUCCCc 2 13 71 94 [mm9:6:83007042-83007065:+] 0.6939 124 0 -21.44 -0.2043 MIMAT0011215 mmu-miR-2139 11993 Aup1 cgucaaUGGUCCUCGUCGCG-UCGa :|| | || ||||| ||| aggagaGCCUGCAGGAGCGCAAGCa 2 19 249 273 [mm9:6:83007340-83007364:+] 0.7558 126 0 -21.46 -0.3831 MIMAT0013803 mmu-miR-2861 11993 Aup1 ggcgggcggCGGUCCGGGg | ||||||| ucagagagaGACAGGCCCa 2 11 303 321 [mm9:6:83007497-83007515:+] 0.6886 142 7 -18.17 -1.0638 MIMAT0014853 mmu-miR-3072 11993 Aup1 ucuuccGAAGGACCUCCCCCGu | | || |||||||| cacaaaCCUGCUCGAGGGGGCu 2 17 29 50 [mm9:6:83007000-83007021:+] 0.6939 156 7 -24.41 -0.3667 MIMAT0015642 mmu-miR-3471 11993 Aup1 uuACGGAAUGUCAACCUAGAGu ||:| || | ||||||| gaUGUC--ACUGAGGGAUCUCa 2 21 69 88 [mm9:6:83007040-83007059:+] 0.6939 149 7 -20.60 -0.5498 MIMAT0000135 mmu-miR-125a-5p 11993 Aup1 aguGUCCAAUUUCCCAGAGUCCCu || ||||| :|||||| ucuCACAUUAAA----UUCAGGGu 2 22 119 138 [mm9:6:83007647-83007666:+] 0.6886 132 6 -16.88 -0.3761 MIMAT0000135 mmu-miR-125a-5p 11993 Aup1 aguGUCCAAUUUCCCAGAGUCCCu || ||||| :|||||| ucuCACAUUAAA----UUCAGGGu 2 22 453 472 [mm9:6:83007647-83007666:+] 0.6886 132 6 -16.88 -0.3195 MIMAT0000136 mmu-miR-125b-5p 11993 Aup1 aguguucaaucccaGAGUCCCu :|||||| aaucucacauuaaaUUCAGGGu 2 9 117 138 [mm9:6:83007645-83007666:+] 0.6886 124 6 -15.55 -0.3995 MIMAT0000136 mmu-miR-125b-5p 11993 Aup1 aguguucaaucccaGAGUCCCu :|||||| aaucucacauuaaaUUCAGGGu 2 9 451 472 [mm9:6:83007645-83007666:+] 0.6886 124 6 -15.55 -0.3405 MIMAT0000208 mmu-miR-10b 11993 Aup1 guguuuaagccaagauGUCCCAu |||||| aaucucacauuaaauuCAGGGUu 2 8 117 139 [mm9:6:83007645-83007667:+] 0.6886 120 6 -13.04 -0.1625 MIMAT0000208 mmu-miR-10b 11993 Aup1 guguuuaagccaagauGUCCCAu |||||| aaucucacauuaaauuCAGGGUu 2 8 451 473 [mm9:6:83007645-83007667:+] 0.6886 120 6 -13.04 -0.1337 MIMAT0000211 mmu-miR-182 11993 Aup1 gccacacUCAAGAUGGU-AACGGUUu || ||| |: ||||||| agcccacAGCCCUAACGUUUGCCAAg 2 19 207 232 [mm9:6:83007298-83007323:+] 0.7358 153 7 -13.71 -0.4848 MIMAT0000237 mmu-miR-204 11993 Aup1 ucCGUAUCCUAC-UGUUUCCCUu | :|:|| | | ||||||| auGAGUGGGUGGUAAAAAGGGAg 2 21 79 101 [mm9:6:83007607-83007629:+] 0.6886 151 7 -20.16 -0.4915 MIMAT0000237 mmu-miR-204 11993 Aup1 ucCGUAUCCUAC-UGUUUCCCUu | :|:|| | | ||||||| auGAGUGGGUGGUAAAAAGGGAg 2 21 413 435 [mm9:6:83007607-83007629:+] 0.6886 151 7 -20.16 -0.4249 MIMAT0000559 mmu-miR-326 11993 Aup1 ugaccUCCUUCC-CGGGUCUCc |||| || ||||||| ggaacAGGAUGGUACCCAGAGc 2 17 8 29 [mm9:6:83007536-83007557:+] 0.6886 155 7 -21.22 -0.2836 MIMAT0000559 mmu-miR-326 11993 Aup1 ugaccUCCUUCC-CGGGUCUCc |||| || ||||||| ggaacAGGAUGGUACCCAGAGc 2 17 342 363 [mm9:6:83007536-83007557:+] 0.6886 155 7 -21.22 -0.3942 MIMAT0000567 mmu-miR-329 11993 Aup1 uuuuuccaaucGACCCACACAa |||||||||| -----ccaggaCUGGGUGUGUa 2 12 1 17 [mm9:6:83006972-83006988:+] 0.6939 155 7 -21.43 -1.1849 MIMAT0004642 mmu-miR-330 11993 Aup1 cgGAUUCUGUGUCC------GGGUCUCu | |||: ||||| ||||||| ccCAAAGGAACAGGAUGGUACCCAGAGc 2 21 2 29 [mm9:6:83007530-83007557:+] 0.6886 151 7 -26.66 -0.2935 MIMAT0004642 mmu-miR-330 11993 Aup1 cgGAUUCUGUGUCC------GGGUCUCu | |||: ||||| ||||||| ccCAAAGGAACAGGAUGGUACCCAGAGc 2 21 336 363 [mm9:6:83007530-83007557:+] 0.6886 151 7 -26.66 -0.4066 MIMAT0000609 mmu-miR-351 11993 Aup1 guccgaguuucccgagGAGUCCCu :|||||| ccaaucucacauuaaaUUCAGGGu 2 9 115 138 [mm9:6:83007643-83007666:+] 0.6886 124 6 -17.65 -0.4088 MIMAT0000609 mmu-miR-351 11993 Aup1 guccgaguuucccgagGAGUCCCu :|||||| ccaaucucacauuaaaUUCAGGGu 2 9 449 472 [mm9:6:83007643-83007666:+] 0.6886 124 6 -17.65 -0.3490 MIMAT0000648 mmu-miR-10a 11993 Aup1 guguuuaagccuagauGUCCCAu |||||| aaucucacauuaaauuCAGGGUu 2 8 117 139 [mm9:6:83007645-83007667:+] 0.6886 120 6 -13.04 -0.1641 MIMAT0000648 mmu-miR-10a 11993 Aup1 guguuuaagccuagauGUCCCAu |||||| aaucucacauuaaauuCAGGGUu 2 8 451 473 [mm9:6:83007645-83007667:+] 0.6886 120 6 -13.04 -0.1350 MIMAT0000668 mmu-miR-211 11993 Aup1 uccgUUUCCUAC--UGUUUCCCUu |: ||:|| | ||||||| gaugAGUGGGUGGUAAAAAGGGAg 2 19 78 101 [mm9:6:83007606-83007629:+] 0.6886 153 7 -20.46 -0.4950 MIMAT0000668 mmu-miR-211 11993 Aup1 uccgUUUCCUAC--UGUUUCCCUu |: ||:|| | ||||||| gaugAGUGGGUGGUAAAAAGGGAg 2 19 412 435 [mm9:6:83007606-83007629:+] 0.6886 153 7 -20.46 -0.4281 MIMAT0000677 mmu-miR-7a 11993 Aup1 uguuguuuuaguGAUCAGAAGGu | |||||||| ccuaacguuugcCAAGUCUUCCu 2 12 217 239 [mm9:6:83007308-83007330:+] 0.7358 147 7 -17.19 -0.6112 MIMAT0000678 mmu-miR-7b 11993 Aup1 uguuguuuuaguGUUCAGAAGGu |||||||||| ccuaacguuugcCAAGUCUUCCu 2 12 217 239 [mm9:6:83007308-83007330:+] 0.7358 155 7 -21.69 -0.6112 MIMAT0004684 mmu-miR-362-3p 11993 Aup1 acuuaGGAACUUGUCCACACAa || || ::||||||| -----CCAGGACUGGGUGUGUa 2 18 1 17 [mm9:6:83006972-83006988:+] 0.6939 153 7 -16.99 -1.1779 MIMAT0001533 mmu-miR-448 11993 Aup1 uaCCCUGUAGGAUGUAUACGUu || || : |: ||||||| caGGCACUGUAUGAAUAUGCAa 2 21 272 293 [mm9:6:83007363-83007384:+] 0.7558 152 7 -13.26 -1.1055 MIMAT0004941 mmu-miR-544 11993 Aup1 cucgaACG-AUUUUUACG-UCUUa ||: |:|| |||| |||| ggcacUGUAUGAAUAUGCAAGAAg 2 18 274 297 [mm9:6:83007365-83007388:+] 0.7558 124 0 -11.26 -1.0352

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G045856 Aup1 Mus musculus 11993

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Aup1 mmu-miR-204 beg:82 end:101 pic:3' TCCGTATCCTACTG--TTTCCCTT 5'& ||.||. |||||||. &5' -------GGGTGGTAAAAAGGGAG 3' Aup1 mmu-miR-211 beg:82 end:101 pic:3' TCCGTTTCCTACTG--TTTCCCTT 5'& ||.||. |||||||. &5' -------GGGTGGTAAAAAGGGAG 3' Aup1 mmu-miR-760 beg:13 end:31 pic:3' AGGGGTGTC-TGGGTCTCGGC 5'& |..| ||||||||||| &5' -----ATGGTACCCAGAGCCG 3' Aup1 mmu-miR-676 beg:21 end:40 pic:3' TCGAGTTGTTGGAGTCCTGCC 5'& ||. |.|| |||||||| &5' ----CAG-AGCCGCAGGACGG 3' Aup1 mmu-miR-326 beg:10 end:29 pic:3' TGACCTCCTTCCC-GGGTCTCC 5'& |||| || ||||||| &5' -----AGGATGGTACCCAGAG- 3' Aup1 mcmv-miR-M23-2 beg:39 end:59 pic:3' GGCGAACTGGCTC----CGGGGGTA 5'& |||.|.| ||||.|| &5' ------GACTGGGGGCAGCCCTCA- 3' Aup1 mmu-miR-1188 beg:108 end:129 pic:3' AGGACCGGGTTGGAGTGTGGT 5'& ||| |||||.||||||..| &5' TCC---CCCAATCTCACATTA 3' Aup1 mmu-miR-125a-5p beg:118 end:138 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& ||||| ||||| .|||||| &5' TCACA--TTAAA----TTCAGGG- 3' Aup1 mmu-miR-125b-3p beg:15 end:38 pic:3' TCGAGGGTTCTCGGA-TTGGGCA 5'& .|. ||| |||||| |. || &5' GGTACCC-AGAGCCGCAGGACG- 3' Aup1 mmu-miR-125b-5p beg:118 end:138 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& ||||| .|||||| &5' TCACATTAAA----TTCAGGG- 3' Aup1 mmu-miR-18astar beg:31 end:53 pic:3' GTCTT-CCTCGTGAATCCCGTCA 5'& |||.| |||| ||| .|||||| &5' CAGGACGGAG-ACTGGGGGCAG- 3' Aup1 mmu-miR-26bstar beg:0 end:16 pic:3' CTCGGTTCATTACCTCTTGTCC 5'& ||| .||||||| &5' --GCCCAAA-----GGAACAGG 3' Aup1 mmu-miR-296-3p beg:43 end:66 pic:3' CCTC-TCGGAGGTGGGTTGGGAG 5'& ||.| |||| ||||||.|. &5' GGGGCAGCCCTCACCCAGCT--- 3' Aup1 mmu-miR-296-5p beg:93 end:113 pic:3' TGTCCTAACTCCC--CCCCGGGA 5'& ||| ||||| |||||.| &5' --AGG---GAGGGATGGGGCTC- 3' Aup1 mmu-miR-330 beg:8 end:29 pic:3' CGGATTCTGTGTCC------GGGTCTCT 5'& || ||||| ||||||| &5' ------GA-ACAGGATGGTACCCAGAG- 3' Aup1 mmu-miR-343 beg:81 end:102 pic:3' AGACCCGTGTAC-TTCCCTCT 5'& ||||. |||||||. &5' --TGGGTGGTAAAAAGGGAGG 3' Aup1 mmu-miR-351 beg:117 end:138 pic:3' GTCCGAGTTTCCCGAGGAGTCCCT 5'& |||| .|||||| &5' ----CTCACATTAAA-TTCAGGG- 3' Aup1 mmu-miR-431 beg:23 end:38 pic:3' ACGTACTGC-CGGACGTTCTGT 5'& | ||| |||.||| &5' --------GAGCC-GCAGGAC- 3' Aup1 mmu-miR-504 beg:129 end:141 pic:3' CTATCTCACGTCTGGTCCCAGA 5'& .||||||.| &5' -------------TCAGGGTTT 3' Aup1 mmu-miR-694 beg:128 end:144 pic:3' GAAGTCCGTTGTAAAAGTC 5'& |||||| .|||||| &5' -TTCAGG----GTTTTCA- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Aup1 mmu-miR-133a 27 52 -UGUCGACCAA-CUU---CCCCUGGUU :| || || ||: ||||:| AGCCGCAGGACGGAGACUGGGGGCA-- Aup1 mmu-miR-149 33 52 -CCUCACUUCUGUGCCUCGGUCU ||| |:|||| ||:|| AGGAC-GGAGACUGGGGGCA--- Aup1 mmu-miR-181c 54 87 UGAGUGG------------CUGUCCAACUUACAA |||||| |:| || |||:|| CCUCACCCAGCUAACAACAGGCCGGAUGAGUGG- Aup1 mmu-miR-181d 57 87 UUGGGU-GGCUGUUGU------UACUUACAA ||||| |: |||||| ||||:|| CACCCAGCUAACAACAGGCCGGAUGAGUGG- Aup1 mmu-miR-188 51 108 -UGGGAG-G--------------UGGUA----CG------ UUCCCUAC :||||| | :||: |: :||||||| AGCCCUCACCCAGCUAACAACAGGCCGGAUGAGUGGGUGGUAAAAAGGGAGGGAUGG Aup1 mmu-miR-199a 8 49 -CUUGUCC-AUCAGA---CUUG------------UGACCC ||||||| |:|| ||:| |||||| GGAACAGGAUGGUACCCAGAGCCGCAGGACGGAGACUGGGG Aup1 mmu-miR-199b 8 49 -CUUGUCC-AUCAGA---UUUG------------UGACCC ||||||| |:|| :|:| |||||| GGAACAGGAUGGUACCCAGAGCCGCAGGACGGAGACUGGGG Aup1 mmu-miR-204 70 103 -GUCCGUAU------CCUACUG--UUUCCCUU- ||||| ||:||: |||||||: ACAGGCCGGAUGAGUGGGUGGUAAAAAGGGAGG Aup1 mmu-miR-207 33 55 CUCCCU-CCUCUCGGUCCUCUUCG- ||| ||||| |::||:| ||| --AGGACGGAGA-CUGGGGGCAGCC Aup1 mmu-miR-211 71 103 -UCCG-----UUU-CCUACUG--UUUCCCUU- |||| :|: ||:||: |||||||: CAGGCCGGAUGAGUGGGUGGUAAAAAGGGAGG Aup1 mmu-miR-212 27 50 CCGGCA--CUGACCUCUGACAAU- |||| ||| |||||||| : AGCCGCAGGAC-GGAGACUGGGGG Aup1 mmu-miR-22 30 52 -UGUCAAGAAGUUGACCGUCGAA :||| | :||||| :|| CGCAGGACGGAGACUGGGGGCA- Aup1 mmu-miR-24 25 46 GACAAGGACGACUUGACUC-GGU | || || |:|| ||| |: -AGAGCC-GCAGGACGGAGACUG Aup1 mmu-miR-296 30 58 -UGUCCUAACUC---CCCCC--CGGGA- :||||| ||| ||||| ||||| CGCAGGACGGAGACUGGGGGCAGCCCUC Aup1 mmu-miR-320 51 67 AAGCGGGAGAGUUGGGUCGAAAA |||||| |||||||| --AGCCCUC---ACCCAGCUA-- Aup1 mmu-miR-324-3p 22 54 -GGUCGUCG------------UGGACCCCGUCACC |||| ||| ||: ||||||| CCCAG-AGCCGCAGGACGGAGACUGGGGGCAGC-- Aup1 mmu-miR-331 32 52 AAGAUCCUAUCCG--GGUCCCCG- |||| || |::||||| ---CAGGAC-GGAGACUGGGGGCA Aup1 mmu-miR-339 79 111 -ACUCGAGGACC----------UCCUGUCCCU ||||: ||| :|||::||| AUGAGUGGGUGGUAAAAAGGGAGGGAUGGGGC Aup1 mmu-miR-345 33 55 -CGUGAC-CUGAUCCCCAGUCGU | || | ||||:|||| |||| AGGACGGAGACUGGGGG-CAGCC Aup1 mmu-miR-346 24 56 -UCUC--CGUCCG-----UGAGC-CCGUCUGU |||| ||||| ||| | ||||| | CAGAGCCGCAGGACGGAGACUGGGGGCAGCCC Aup1 mmu-miR-365 37 53 UAUUCCUAAAAAUCCCCGUAAU ||| |:|||||| ---CGGAGAC-UGGGGGCAG-- Aup1 mmu-miR-370 40 77 -UUGGUCCAA---GGUG--GGGUCG-------UCCG- :||::|| || |||||| |||| AGACUGGGGGCAGCCCUCACCCAGCUAACAACAGGCC Aup1 mmu-miR-378 29 50 UGUGUCCUGGACCUCAGUCCUC- |:|||||| |||| | ||:| CCGCAGGAC--GGAGACUGGGGG Aup1 mmu-miR-423 42 67 -GACUCCCC---GGAGUCUGGCUCGA- |||:||| |||| ||| |||| ACUGGGGGCAGCCCUC--ACCCAGCUA Aup1 mmu-miR-431 28 53 -GGACGUACUGCCG--GACGUUCUGU- || ||| ||||| ||| ::|:|| GCC-GCAGGACGGAGACUG-GGGGCAG Aup1 mmu-miR-433-5p 40 62 -CUUAUUACUGUCC-GAGUGGCAU || |: |:||| |||||| AGACUGGGGGCAGCCCUCACCC-- Aup1 mmu-miR-485-5p 42 59 CUUAAGUAGUGC-CGGUC-GGAGA | | | ||| |||| -------ACUGGGGGCAGCCCUCA Aup1 mmu-miR-491 96 118 GGAGUACCUUCCCA------AGGGGUGA ||:|||| ||||| | -----AGGGAGGGAUGGGGCUCCCC-CA Aup1 mmu-miR-542-5p 10 30 GCACUGUACUACUA-GGGGCUC- ||| ||||:| ||| ||| ---AACAGGAUGGUACCCAGAGC Aup1 mmu-miR-615 38 81 -UUCU--CCCUC--------UGGG----------UCCGAGCCU :||| |||:| |||| |||| |||| GGAGACUGGGGGCAGCCCUCACCCAGCUAACAACAGGC-CGGAU Aup1 mmu-miR-670 118 139 AAGUGGUGUAUG-UGAGUCCCUA || :||||| |:|||||| AUC-UCACAUUAAAUUCAGGGU- Aup1 mmu-miR-671 109 144 GGAGGUCGGGG-------------AGGUCCCGAAGGA |||| ||| |:|||||:||:| GCUCC--CCCAAUCUCACAUUAAAUUCAGGGUUUUCA Aup1 mmu-miR-675-5p 41 62 -UGACACCCGGGAAAGGCGUGGU |||| |||| || |||| GACUGGGGGCAGC--CCUCACCC Aup1 mmu-miR-676 17 41 -UCGA--GUUGUUGGAGUCCUGCC- :|: ||: |:|| |||||||| UGGUACCCAG-AGCCGCAGGACGGA Aup1 mmu-miR-678 22 45 GGAGGUCA-GGAA-CGUGGCUCUG- |||| || | || ||||| --CCCAGAGCCGCAGGACGGAGACU Aup1 mmu-miR-683 44 76 -CUCCUGU---------GUCGAAUGUCGUCC- |:||:|| ||||| ||| |||| UGGGGGCAGCCCUCACCCAGCUAACAACAGGC Aup1 mmu-miR-689 17 52 -CC-UGGGG--CGGC-UC---------GCCCCUGC || |||| |||| || :||||:| UGGUACCCAGAGCCGCAGGACGGAGACUGGGGGCA Aup1 mmu-miR-692 80 104 -CUCACUCCGCGAG---UUUCUCUA ||||| ||:| | |::|||: UGAGUG-GGUGGUAAAAAGGGAGGG Aup1 mmu-miR-697 2 20 AGAGGUGUCCUGGUCCUACAA ||| |||| ||||||| --CCCAAAGGAACAGGAUGG- Aup1 mmu-miR-702 80 112 -CUCGCCC-CA-------UUUCCCA--CCCGU |||:||| | ::|||| |||| UGAGUGGGUGGUAAAAAGGGAGGGAUGGGGCU Aup1 mmu-miR-718 16 43 -GCUGUGGG-C-CGGC--CC-GCCUUC :|::|||| | |||| || ||||: AUGGUACCCAGAGCCGCAGGACGGAGA Aup1 mmu-miR-744 42 66 CGACAA---UCGGGAUCGGGGCGU ||| |||||| ||| || ACUGGGGGCAGCCCUCACCCAGCU Aup1 mmu-miR-761 43 67 ACACA---GUCAA-AGUGGGACGACG || ||| |||||| ||| -CUGGGGGCAGCCCUCACCCAGCUA- Aup1 mmu-miR-762 42 67 CGAGACA------GGGCCGGGGUCGGGG ||| ||| ||||||: --ACUGGGGGCAGCCCUCACCCAGCUA- Aup1 mmu-miR-763 27 67 -CGG-----------UGACCAAGAA-------GGGUCGACC ||| ||||| ||||||| AGCCGCAGGACGGAGACUGGGGGCAGCCCUCACCCAGCUA- Aup1 mmu-miR-770-3p 59 80 -GGUCGAGGUGCAGUCCGGGUGC |||||| || |||||| : CCCAGCUA-ACAACAGGCCGGA- Aup1 mmu-miR-804 95 127 AGGUCCACUCCUUGUU------------GAGUGU- ||| ||||:|::: |||||| --AAGG-GAGGGAUGGGGCUCCCCCAAUCUCACAU Aup1 mmu-miR-99a 30 51 -UGUUCUAGCCUA-GAUGCCCA :||:|| |||| ||: ||| CGCAGGA-CGGAGACUGGGGGC Aup1 mmu-miR-204 94 101 ------------GUCCGUAUCCUACUG----------UUUCCCUU ||||| |||||| |||||||: CCCAGCUAACAACAGGCC--GGAUGAGUGGGUGGUAAAAAGGGAGG Aup1 mmu-miR-211 94 101 -------------UCCGUUUCCUACUG----------UUUCCCUU |||| |||||| |||||||: CCCAGCUAACAACAGGCC--GGAUGAGUGGGUGGUAAAAAGGGAGG Aup1 mmu-miR-133a 28 52 uGUCGACCAACUUC---CCCUGGUu | || || |:|| |||: || gCCGCAGGACGGAGACTGGGGGCAg Aup1 mmu-miR-149 34 53 CCUCACUUCUGUGCCUCGGUCU ||| |:|||| :||:| ||| GGA-CGGAGAC-TGGGGGCAGC Aup1 mmu-miR-181c 66 87 ugagUGGCUGUCCAACUUACaa || |:| || |||:|| aacaACAGGCCGGATGAGTGgg Aup1 mmu-miR-181d 57 87 uUGGGU-GGCUGUUGU------UACUUACaa ||||| |: |||||| ||||:|| cACCCAGCTAACAACAGGCCGGATGAGTGgg Aup1 mmu-miR-188 85 106 ugggagguggUACGUUCCCUAC | | :||||||| gggtggtaaaAAGGGAGGGATG Aup1 mmu-miR-199a 26 47 CUUGUCCAUCAGACUUGUGACCC ||:| | :| | |:| |||||| GAGCCGCAGGAC-GGAGACTGGG Aup1 mmu-miR-199b 26 47 CUUGUCCAUCAGAUUUGUGACCC ||:| | :| | ::| |||||| GAGCCGCAGGAC-GGAGACTGGG Aup1 mmu-miR-204 71 101 GUCCG---UAU---CCUAC--UGUUUCCCUu ||||| ||: ||:|| | ||||||| CAGGCCGGATGAGTGGGTGGTAAAAAGGGAg Aup1 mmu-miR-207 32 53 cUCCCUCCUCUCGGUCCUCUUCG ||| ||||| |::||:| ||| cAGGACGGAGA-CTGGGGGCAGC Aup1 mmu-miR-211 72 101 UCCG------UUUCCUAC--UGUUUCCCUu |||| |: ||:|| | ||||||| AGGCCGGATGAGTGGGTGGTAAAAAGGGAg Aup1 mmu-miR-22 31 55 uGUCAAGAAGUUGA---CCGUCGaa ||| | :||| |||||| gCAGGACGGAGACTGGGGGCAGCcc Aup1 mmu-miR-24 10 31 gacaaggACGACUUGACUCGGu || | | ||||| aacaggaTGGTACCCAGAGCCg Aup1 mmu-miR-296 31 56 uGUCCUAACUC---CCCCC--CGGGA ||||| ||| ||||| ||||| gCAGGACGGAGACTGGGGGCAGCCCT Aup1 mmu-miR-320 49 68 aagCGGGAGAGUUGGGUCGAaaa |||||| |||||||| gcaGCCCTC---ACCCAGCTaac Aup1 mmu-miR-324-3p 29 55 GGUCGUCGUG-----GA-CCCCGUCacc || |||| || || ||||||| CC-GCAGGACGGAGACTGGGGGCAGccc Aup1 mmu-miR-331 29 50 aagaUCCUAUC-CGGGUCCCCG |||| :| | |::||||| ccgcAGGACGGAGACTGGGGGC Aup1 mmu-miR-339 89 110 acucgaggaCCU-CCUGUCCCu ||| |||::||| ggtaaaaagGGAGGGATGGGGc Aup1 mmu-miR-345 34 54 CGUGAC-CUGAUCCCCAGUCGu | || | |||| |||| |||| GGACGGAGACT-GGGGGCAGCc Aup1 mmu-miR-346 25 55 UCUC--CGUCC-G----UGA-GCCCGUCUGu |||| ||||| | ||| |||||| | AGAGCCGCAGGACGGAGACTGGGGGCAGCCc Aup1 mmu-miR-365 33 54 uauuccuaaaaAUCCCCGUaau |:|||||| aggacggagacTGGGGGCAgcc Aup1 mmu-miR-370 47 75 uugGUCCAAGGUGGG------GUCGUCCG ||| :||||| || ||||| gggCAGCCCTCACCCAGCTAACAACAGGC Aup1 mmu-miR-423 43 65 GACUCCC--CGGAGUCUGGCUCGA |||:||| ||| | ||| |||| CTGGGGGCAGCC-CTCACCCAGCT Aup1 mmu-miR-431 11 38 gGACGUAC--UG---C-CGGACGUUCUGu | | ||| || | ||| |||:||| aCAGGATGGTACCCAGAGCC-GCAGGACg Aup1 mmu-miR-433-5p 41 63 CUUAUUACUGUC-CGAGUGGcau || |:: |:||| |||||| GACTGGGGGCAGCCCTCACCcag Aup1 mmu-miR-485-5p 36 58 cuuaaguagugCCGGUC-GGAGa || ||| |||| acggagactggGGGCAGCCCTCa Aup1 mmu-miR-491 96 118 ggagUACCU-UCCCAAGGGGuga | ||| :||| ||||| agggAGGGATGGGGCTCCCCcaa Aup1 mmu-miR-542-5p 7 28 gcacUGUACUACUA-GGGGCUC ||| ||||:| ||| ||| aggaACAGGATGGTACCCAGAG Aup1 mmu-miR-615 59 79 uucucccucuggGUCCGAGCCU ||||| |||| cccagctaacaaCAGGC-CGGA Aup1 mmu-miR-670 118 139 aAGUGGUGU-AUGUGAGUCCCua || :|||| || |:|||||| aTC-TCACATTAAATTCAGGGtt Aup1 mmu-miR-671 112 143 GGAGGUCGGGG--------AGGUCCCGAAGGa || ||| :|:| |:|||||:||:| CCCCCAATCTCACATTAAATTCAGGGTTTTCa Aup1 mmu-miR-671 92 115 ggaggucggggagguCCCGAAGGa ||||| || aaaaagggagggatgGGGCTCCCc Aup1 mmu-miR-675-5p 42 61 UGACACCCG-GGAAAGGCGUGGu |||| |||| | || |||| ACTGGGGGCAGC---CCTCACCc Aup1 mmu-miR-676 20 39 ucGAGUUGUUGGAGUCCUGCC | ||: |:|| |||||||| taCCCAG-AGCCGCAGGACGG Aup1 mmu-miR-678 20 43 ggaGGUC-AGGAACG---UGGCUCUG |||| || || || ||||| tacCCAGAGCC--GCAGGACGGAGAC Aup1 mmu-miR-683 54 74 cuccUGUGUCGAAUGUCGUCC || ||||| ||| |||| cctcACCCAGCTAACAACAGG Aup1 mmu-miR-689 18 44 CC-UGGG--GCGGC-UC--GCCCCUGc || |||| |||| || ||| ||| GGTACCCAGAGCCGCAGGACGGAGACt Aup1 mmu-miR-692 81 101 CUCACUCCGCGAGUUUCUCUa |||||:| |: ||||:|| GAGTGGGTGGTAAAAAGGGAg Aup1 mmu-miR-697 1 20 agaGGUGUCCUGGUCCUACaa ||| |||| ||||||| -gcCCAAAGGAACAGGATGgt Aup1 mmu-miR-702 81 105 CUCGCC--CCA--UUUCCCACCCgu |||:|| ||| |||||| ||| GAGTGGGTGGTAAAAAGGGAGGGat Aup1 mmu-miR-705 108 127 aCGGGUGGGGUGGAGGGUgg ||:| ||| |:||| || gGCTCCCCCAATCTCACAtt Aup1 mmu-miR-718 17 42 gCUGUGGG-C-CGGC--CC-GCCUuc |::|||| | |||| || |||| tGGTACCCAGAGCCGCAGGACGGAga Aup1 mmu-miR-744 45 65 cgacaaUCGGGAUCGGGGCGu |||||| ||| || gggggcAGCCCTCACCCAGCt Aup1 mmu-miR-761 45 67 aCACAGUC-AAAGUGGGACGAcg | | ||| |||||| ||| gGGGGCAGCCCTCACCCAGCTaa Aup1 mmu-miR-762 35 56 cgagacagggccgggGUCGGGg |||||| gacggagactgggggCAGCCCt Aup1 mmu-miR-763 39 67 cggUGAC------CAAGA-AGGGUCGAcc |||| | || ||||||| gagACTGGGGGCAGCCCTCACCCAGCTaa Aup1 mmu-miR-770-3p 60 80 GGUCGAGGUGCAGUCCGGgugc |||||| || |||||| CCAGCT-AACAACAGGCCggat Aup1 mmu-miR-804 97 125 aggUCC--ACUCCUUG-----UUGAGUGU ||| ||:|| | | |||||| gggAGGGATGGGGCTCCCCCAATCTCACA Aup1 mmu-miR-99a 31 50 uGUUCUAGCCU-AGAUGCCCa ||:|| |||| ||: ||| gCAGGA-CGGAGACTGGGGGc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Aup1 RAID00045893 mmu-miR-211-5p miRNA MIMAT0000668 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID00083955 mmu-miR-182-5p miRNA MIMAT0000211 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID00241345 mmu-miR-7669-3p miRNA MIMAT0029845 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID01100377 mmu-miR-10a-5p miRNA MIMAT0000648 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID01149110 mmu-miR-204-5p miRNA MIMAT0000237 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID01218553 mmu-miR-7688-5p miRNA MIMAT0029906 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID01267317 mmu-miR-7a-5p miRNA MIMAT0000677 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID01402972 mmu-miR-330-5p miRNA MIMAT0004642 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID01534446 mmu-miR-448-3p miRNA MIMAT0001533 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID01988325 mmu-miR-351-5p miRNA MIMAT0000609 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID02183290 mmu-miR-544-3p miRNA MIMAT0004941 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID02261618 mmu-miR-10b-5p miRNA MIMAT0000208 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID02350936 mmu-miR-6971-5p miRNA MIMAT0027844 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID02355121 mmu-miR-7b-5p miRNA MIMAT0000678 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID02382294 mmu-miR-125a-5p miRNA MIMAT0000135 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID02879451 mmu-miR-329-3p miRNA MIMAT0000567 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID03093456 mmu-miR-326-3p miRNA MIMAT0000559 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID03492341 mmu-miR-125b-5p miRNA MIMAT0000136 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID03607221 mmu-miR-6337 miRNA MIMAT0025080 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID03635484 mmu-miR-362-3p miRNA MIMAT0004684 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID03688218 mmu-miR-6923-5p miRNA MIMAT0027746 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID03774199 mmu-miR-6986-5p miRNA MIMAT0027874 Aup1 mRNA 11993 Prediction 0.1828 Aup1 RAID04662575 G730013B05Rik lncRNA 619312 Aup1 protein 11993 Microarray//RNA-seq 0.6606