DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 360643 Cdc27 ggucGUCGUGGACCCCGUCACc ||| |: ||||||| ugcaCAGAAUGGAAGGCAGUGc 2 19 138 159 [rn4:10:93679103-93679124:-] 0.6540 146 7 -20.62 -0.7867 MIMAT0000613 rno-miR-151 360643 Cdc27 ugaucuGACACUCGAGGAGcu || | | |||||| uuuuuuCUUUAAUCUCCUCag 3 16 236 256 [rn4:10:93679006-93679026:-] 0.6632 131 0 -11.34 -0.1556 MIMAT0004731 rno-miR-125b* 360643 Cdc27 uccaggguUCUCGGACUGA-ACa ||| :|||||| || uggaagucAGACUCUGACUGUGg 2 15 5 27 [rn4:10:93679235-93679257:-] 0.6540 122 0 -15.86 -0.2531 MIMAT0004737 rno-miR-196a* 360643 Cdc27 aguccgucaaagaaCAACGGcu |||||| gaacaauaaaagacGUUGCCug 3 9 448 469 [rn4:10:93678793-93678814:-] 0.6632 120 0 -9.21 -0.1188 MIMAT0004740 rno-miR-218* 360643 Cdc27 gcgccacgaACUGUCUUGGUac |||: |||||| ugggaauggUGAU-GAACCAga 3 14 314 334 [rn4:10:93678928-93678948:-] 0.6632 127 0 -16.48 -0.1805 MIMAT0003121 rno-miR-483 360643 Cdc27 uguucUGCCCUCCCCUCC-UCACu || | | || ||| |||| acugcACAGAAUGGAAGGCAGUGc 2 19 136 159 [rn4:10:93679103-93679126:-] 0.6540 122 0 -15.69 -0.8627 MIMAT0003191 rno-miR-493 360643 Cdc27 gaccgUGUGUCAU---CUGGAAGu ||| |||: ||||||| gauaaACAGAGUGACUGACCUUCa 2 17 383 406 [rn4:10:93678856-93678879:-] 0.6632 151 7 -20.03 -1.1857 MIMAT0005317 rno-miR-463 360643 Cdc27 gauGGGUUUAACC-GCAGAUAGu ||: |:|||| |||||| ucuCCUCAGUUGGAAAUCUAUCa 2 20 248 270 [rn4:10:93678992-93679014:-] 0.6632 130 6 -21.73 -0.1886 MIMAT0012827 rno-miR-1224 360643 Cdc27 gagguggaggggucAGGAGUg |||||| uuuuuucuuuaaucUCCUCAg 2 8 236 256 [rn4:10:93679006-93679026:-] 0.6632 120 6 -19.01 -0.1901 MIMAT0012839 rno-miR-668 360643 Cdc27 ccaucacccggcUCGGCUCACUGu | | ||||||| cuauuccugauaAACAGAGUGACu 2 13 375 398 [rn4:10:93678864-93678887:-] 0.6632 144 7 -14.96 -1.0623 MIMAT0012853 rno-miR-761 360643 Cdc27 acACAGUCAAAGUGGGAC-GACg | ||| || |||||| ||| gcUUUCA-UUGGACCCUGACUGc 2 21 119 140 [rn4:10:93679122-93679143:-] 0.6540 126 0 -19.38 -0.4803 MIMAT0001619 rno-miR-322 360643 Cdc27 agguuuuguacuuaaCGACGAc |||||| gcagugcaauccuuaGCUGCUa 2 8 153 174 [rn4:10:93679088-93679109:-] 0.6586 120 6 -11.16 -0.1127 MIMAT0000784 rno-miR-15b 360643 Cdc27 acauuugguacuacaCGACGAu |||||| gcagugcaauccuuaGCUGCUa 2 8 153 174 [rn4:10:93679088-93679109:-] 0.6586 120 6 -12.48 -0.1105 MIMAT0000785 rno-miR-16 360643 Cdc27 gcgguuauaaaugcaCGACGAu |||||| gcagugcaauccuuaGCUGCUa 2 8 153 174 [rn4:10:93679088-93679109:-] 0.6586 120 6 -13.50 -0.1127 MIMAT0000795 rno-miR-25 360643 Cdc27 agUCUGGC--UCUGUUCACGUUAc ||| :| ||:| |||||||| acAGAAUGGAAGGC-AGUGCAAUc 2 21 141 163 [rn4:10:93679099-93679121:-] 0.6540 157 7 -21.08 -0.4546 MIMAT0000811 rno-miR-32 360643 Cdc27 acGUUGAAUCAUU--ACACGUUAu ||: |:| |: ||||||| caCAGAAUGGAAGGCAGUGCAAUc 2 21 140 163 [rn4:10:93679099-93679122:-] 0.6540 143 7 -12.68 -0.4546 MIMAT0000816 rno-miR-92a 360643 Cdc27 guccgGCCCUGU-UCACGUUAu :|| | : |||||||| cagaaUGGAAGGCAGUGCAAUc 2 17 142 163 [rn4:10:93679099-93679120:-] 0.6540 147 7 -19.35 -0.4513 MIMAT0000838 rno-miR-132 360643 Cdc27 gcUGGUACCGA-CAU--CUG-ACAAu ||::||||| ||: ||| |||| ugACUGUGGCUAGUGCUGACAUGUUu 2 21 19 44 [rn4:10:93679218-93679243:-] 0.6540 130 0 -23.74 -0.4372 MIMAT0000858 rno-miR-181a 360643 Cdc27 ugaguggCUGUCGCAACU-UACAa | :||:| ||| |||| gacugugGCUAGUGCUGACAUGUu 2 17 20 43 [rn4:10:93679219-93679242:-] 0.6540 120 0 -16.41 -0.4955 MIMAT0000859 rno-miR-181b 360643 Cdc27 ugGGUGGCUGUCGUUACU-UACAa |::: | :||:: ||| |||| gaCUGUGGCUAGUGCUGACAUGUu 2 22 20 43 [rn4:10:93679219-93679242:-] 0.6540 121 0 -13.04 -0.4955 MIMAT0000863 rno-miR-186 360643 Cdc27 ucggguuuuccucuuAAGAAAc |||||| ggaacuuuucuuuuuUUCUUUa 2 8 225 246 [rn4:10:93679016-93679037:-] 0.6632 120 6 -4.06 -0.1648 MIMAT0000870 rno-miR-195 360643 Cdc27 cgGUUA--UAAAGACACGACGAu ||:| | | || |||||| ggCAGUGCAAUCCUUAGCUGCUa 2 20 152 174 [rn4:10:93679088-93679110:-] 0.6586 122 6 -14.65 -0.1127 MIMAT0000871 rno-miR-196a 360643 Cdc27 gggUUGUUGUACUUUGA-UGGAu ||||: :|| ||| |||| auaAACAGAGUG--ACUGACCUu 2 20 384 404 [rn4:10:93678858-93678878:-] 0.6632 120 0 -12.49 -0.9981 MIMAT0000878 rno-miR-205 360643 Cdc27 gucugaggccaccuuACUUCCu |||||| aguuauguuuuaucuUGAAGGa 2 8 281 302 [rn4:10:93678960-93678981:-] 0.6632 120 6 -10.29 -0.1419 MIMAT0000892 rno-miR-223 360643 Cdc27 ccccauaaaCUGUUUGACUGu || :|||||| ugauaaacaGAGUGACUGACc 2 13 382 402 [rn4:10:93678860-93678880:-] 0.6632 128 6 -9.74 -0.1150 MIMAT0001082 rno-miR-196b 360643 Cdc27 ggguugUUGUC-CUUUGA-UGGAu ||||| | :||| |||| cugauaAACAGAGUGACUGACCUu 2 17 381 404 [rn4:10:93678858-93678881:-] 0.6632 123 0 -14.95 -1.0175 MIMAT0001628 rno-miR-433 360643 Cdc27 uguggcUCCUCGGGUAGUACUa :| | :|:||||||: ucaguuGGAAAUCUAUCAUGGa 2 17 253 274 [rn4:10:93678988-93679009:-] 0.6632 136 0 -16.84 -0.1153 MIMAT0003117 rno-miR-361 360643 Cdc27 cauggggaccucuaaGACUAUu |||||| uauuugguucuauucCUGAUAa 2 8 366 387 [rn4:10:93678875-93678896:-] 0.6632 120 6 -13.55 -0.1936 MIMAT0003193 rno-miR-494 360643 Cdc27 ucCAAAGGGCAC-A---UACAAAGu || |: ||| | ||||||| cuGUGGCUAGUGCUGACAUGUUUCu 2 20 22 46 [rn4:10:93679216-93679240:-] 0.6540 141 7 -11.14 -0.4369 MIMAT0003193 rno-miR-494 360643 Cdc27 uccaaagggCACAUACAAAGu || |||||||: gaaggaagaGU-UAUGUUUUa 2 13 273 292 [rn4:10:93678970-93678989:-] 0.6632 130 0 -10.95 -0.1186 MIMAT0003210 rno-miR-363 360643 Cdc27 auGUC-UACC-UAUGGCACGUUAa ||| |||| | :| ||||||| caCAGAAUGGAAGGCAGUGCAAUc 2 21 140 163 [rn4:10:93679099-93679122:-] 0.6540 162 7 -21.56 -0.4382 MIMAT0003213 rno-miR-503 360643 Cdc27 gaCGUCAUGACAAG-GGCGACGAu |||||:| | | : |||||| agGCAGUGCAAUCCUUAGCUGCUa 2 22 151 174 [rn4:10:93679088-93679111:-] 0.6586 132 6 -25.91 -0.1127 MIMAT0003383 rno-miR-497 360643 Cdc27 auguuuggugucacaCGACGAc |||||| gcagugcaauccuuaGCUGCUa 2 8 153 174 [rn4:10:93679088-93679109:-] 0.6586 120 6 -13.13 -0.1127 MIMAT0005339 rno-miR-873 360643 Cdc27 uccucugaguguucAAGGACg |||||| uuuauuugguucuaUUCCUGa 2 8 364 384 [rn4:10:93678878-93678898:-] 0.6632 120 6 -11.49 -0.3787 MIMAT0005340 rno-miR-92b 360643 Cdc27 ccUCCGGCCCUGC-UCACGUUAu || :|| | | |||||||| acAGAAUGGAAGGCAGUGCAAUc 2 21 141 163 [rn4:10:93679099-93679121:-] 0.6540 155 7 -16.95 -0.4513

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G099057 Cdc27 Rattus norvegicus 360643

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cdc27 RAID00056247 rno-miR-195-5p miRNA MIMAT0000870 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID00057743 rno-miR-361-5p miRNA MIMAT0003117 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID00330411 rno-miR-363-3p miRNA MIMAT0003210 Cdc27 mRNA 360643 Prediction 0.2202 Cdc27 RAID00380655 rno-miR-132-3p miRNA MIMAT0000838 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID00390587 rno-miR-503-5p miRNA MIMAT0003213 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID00488305 rno-miR-92b-3p miRNA MIMAT0005340 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID00494793 rno-miR-205 miRNA MIMAT0000878 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID00703662 rno-miR-181b-5p miRNA MIMAT0000859 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID00826744 rno-miR-873-5p miRNA MIMAT0005339 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID01018995 rno-miR-322-5p miRNA MIMAT0001619 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID01226244 rno-miR-325-3p miRNA MIMAT0004639 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID01637128 rno-miR-16-5p miRNA MIMAT0000785 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID01940439 rno-miR-196a-5p miRNA MIMAT0000871 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID01998779 rno-miR-15b-5p miRNA MIMAT0000784 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID02048758 rno-miR-32-5p miRNA MIMAT0000811 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID02194059 rno-miR-182 miRNA MIMAT0005300 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID02288920 rno-miR-196b-5p miRNA MIMAT0001082 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID02419398 rno-miR-497-5p miRNA MIMAT0003383 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID02466626 rno-miR-181a-5p miRNA MIMAT0000858 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID02480799 rno-miR-3591 miRNA MIMAT0017893 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID02520569 rno-miR-23b-5p miRNA MIMAT0017099 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID02777906 rno-miR-223-3p miRNA MIMAT0000892 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID03056929 rno-miR-324-3p miRNA MIMAT0000554 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID03081188 rno-miR-331-5p miRNA MIMAT0017033 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID03092853 rno-miR-433-3p miRNA MIMAT0001628 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID03286194 rno-miR-493-3p miRNA MIMAT0003191 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID03527408 rno-miR-186-5p miRNA MIMAT0000863 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID03647282 rno-miR-494-3p miRNA MIMAT0003193 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID03729861 rno-miR-1843a-5p miRNA MIMAT0024847 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID03953904 rno-miR-92a-3p miRNA MIMAT0000816 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID03967697 rno-miR-25-3p miRNA MIMAT0000795 Cdc27 mRNA 360643 Prediction 0.1828 Cdc27 RAID04060512 rno-miR-668 miRNA MIMAT0012839 Cdc27 mRNA 360643 Prediction 0.1828