DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 362849 March2 ggUCGUCGUGGAC-CCCGUCACc | | | ::| | ||||||| agACCCGAGUCAGAUGGCAGUGc 2 21 34 56 [rn4:7:16193534-16193556:-] 0.4443 143 7 -18.76 -0.2138 MIMAT0004652 rno-miR-342-5p 362849 March2 gaguuagUGUCU-AU-CGUGGGGa |::|| || ||||||| gcuuuggAUGGAGUAGGCACCCCu 2 16 227 250 [rn4:7:16193340-16193363:-] 0.5381 149 7 -20.86 -0.4626 MIMAT0004654 rno-miR-344-5p 362849 March2 ggaccuuagaUCGGU--CCUCGGACu ||| | ||||||| caauagccacAGCAAACAGAGCCUGc 2 15 119 144 [rn4:7:16193446-16193471:-] 0.5381 141 7 -18.57 -0.3704 MIMAT0000610 rno-miR-352 362849 March2 augauacguuggauGAUGAGa |||||| ugcauuucaaaaacCUACUCc 2 8 419 439 [rn4:7:16193151-16193171:-] 0.6219 120 6 -10.68 -0.2713 MIMAT0004705 rno-let-7b* 362849 March2 cccuuccGUCAUCCAACAUAUc || || ||||||| uuuugcaCAUUA--UUGUAUAu 2 16 182 201 [rn4:7:16193389-16193408:-] 0.5381 144 7 -5.81 -0.6161 MIMAT0004708 rno-miR-9* 362849 March2 ugaAAGCCAAUAGAUCGAAAUa ||:|| | | ||||||| cccUUUGGACAGC-AGCUUUAg 2 20 276 296 [rn4:7:16193294-16193314:-] 0.5800 153 7 -11.43 -0.1057 MIMAT0003153 rno-miR-24-1* 362849 March2 gacuauAGUCGA-GUCAUCCGUg |::| | |||||||| ugagcuUUGGAUGGAGUAGGCAc 2 17 224 246 [rn4:7:16193344-16193366:-] 0.5381 147 7 -19.16 -0.3219 MIMAT0005441 rno-miR-24-2* 362849 March2 ugaCAAAGUCGA-GUCAUCCGUg | ||::| | |||||||| ugaGCUUUGGAUGGAGUAGGCAc 2 20 224 246 [rn4:7:16193344-16193366:-] 0.5381 154 7 -18.91 -0.3193 MIMAT0000902 rno-miR-300-3p 362849 March2 cuucucUCGAACG-GGAACGUAu ||| || :||||||| gguuccAGCAGGCUUCUUGCAUu 2 17 334 356 [rn4:7:16193234-16193256:-] 0.6219 151 7 -16.16 -0.3658 MIMAT0003382 rno-miR-664 362849 March2 auccgaccccucAUUUACUUAu ||||||||| aaaaccuacuccUAAAUGAAUa 2 11 428 449 [rn4:7:16193141-16193162:-] 0.6219 150 7 -8.18 -1.2259 MIMAT0005288 rno-miR-880 362849 March2 agaUGAGUCUUACUUACCUCAu |:|::||| | ||||||| ggcAUUUGGAAAG-AUGGAGUc 2 20 59 79 [rn4:7:16193511-16193531:-] 0.5381 161 7 -15.28 -0.1357 MIMAT0005288 rno-miR-880 362849 March2 agaugagucuuACUUACCUCAu ||:||||||| gauuugagcuuUGGAUGGAGUa 2 12 220 241 [rn4:7:16193349-16193370:-] 0.5381 151 7 -19.06 -0.4219 MIMAT0005319 rno-miR-484 362849 March2 uagcccUCCCCUGACUCGGACu || || ||||||| agccacAGCAAACAGAGCCUGc 2 17 123 144 [rn4:7:16193446-16193467:-] 0.5381 148 7 -13.74 -0.3733 MIMAT0005337 rno-miR-760-3p 362849 March2 aggGGUGUC-UGGGUCUCGGc |||||| | ||||||| uagCCACAGCAAACAGAGCCu 2 18 122 142 [rn4:7:16193448-16193468:-] 0.5381 160 7 -24.39 -0.4814 MIMAT0012849 rno-miR-295 362849 March2 cuucacacgggGUGUAAACUCa || ||||||| gcacagauggaCAGAUUUGAGc 2 12 207 228 [rn4:7:16193362-16193383:-] 0.5381 147 7 -12.58 -0.3259 MIMAT0012850 rno-miR-465 362849 March2 guguggucguggcaaGAUUUAu |||||| uucaaaaaccuacucCUAAAUg 2 8 424 445 [rn4:7:16193145-16193166:-] 0.6219 120 6 -10.73 -0.2224 MIMAT0012856 rno-miR-759 362849 March2 caguuuuaacaaacGUGAGACg ||||||| aggcaccccuaucuCACUCUGa 2 9 241 262 [rn4:7:16193328-16193349:-] 0.5381 140 7 -13.77 -0.7457 MIMAT0000552 rno-miR-301a 362849 March2 cgaaacuguUAUGAUAACGUGAc ||| :||||||| uauaaacuuAUAAAGUUGCACUg 2 15 398 420 [rn4:7:16193170-16193192:-] 0.6219 150 7 -15.02 -0.8899 MIMAT0000579 rno-miR-148b-3p 362849 March2 ugUUUCAAGA-CACUACGUGACu ||| || | | ||||||| auAAACUUAUAAAGUUGCACUGc 2 21 399 421 [rn4:7:16193169-16193191:-] 0.6219 151 7 -14.26 -1.1650 MIMAT0000600 rno-miR-129 362849 March2 cguucgggucuggcGUUUUUc |||||| guugcacugcauuuCAAAAAc 2 8 412 432 [rn4:7:16193158-16193178:-] 0.6219 120 6 -5.92 -0.1034 MIMAT0000788 rno-miR-19b 362849 March2 agUCAAAA----CGUACCUAAACGUGu | |||| |: | | ||||||| auAUUUUUAAGGGUUUUGUUUUGCACa 2 22 164 190 [rn4:7:16193400-16193426:-] 0.5381 148 7 -15.84 -1.1926 MIMAT0000788 rno-miR-19b 362849 March2 agucaaaacguaccuaAACGUGu |||||| uuauaaacuuauaaagUUGCACu 2 8 397 419 [rn4:7:16193171-16193193:-] 0.6219 120 6 -6.59 -0.1039 MIMAT0000789 rno-miR-19a 362849 March2 agUCAAAA----CGUAUCUAAACGUGu | |||| |: | | ||||||| auAUUUUUAAGGGUUUUGUUUUGCACa 2 22 164 190 [rn4:7:16193400-16193426:-] 0.5381 148 7 -15.84 -1.1926 MIMAT0000789 rno-miR-19a 362849 March2 agucaaaacGUAUCUAAACGUGu :||| | |||||| uuauaaacuUAUAAAGUUGCACu 2 15 397 419 [rn4:7:16193171-16193193:-] 0.6219 126 6 -8.19 -0.1039 MIMAT0000814 rno-miR-34c 362849 March2 cgUUAGUCGAUUGAUGUGACGga | |:| |::|:|||||| aaACUUAUAAAGUUGCACUGCau 3 22 401 423 [rn4:7:16193167-16193189:-] 0.6219 137 0 -15.09 -0.1001 MIMAT0000817 rno-miR-93 362849 March2 gaUGGACGUGCUUGUCGU-GAAAc ||| : :|:|||||| |||| acACC-CUUUGGACAGCAGCUUUa 2 22 273 295 [rn4:7:16193295-16193317:-] 0.5800 127 0 -19.11 -0.2542 MIMAT0000836 rno-miR-130a 362849 March2 uacggGAAAAUUGUAACGUGAc ||| ||| :||||||| auaaaCUUAUAAAGUUGCACUg 2 18 399 420 [rn4:7:16193170-16193191:-] 0.6219 165 7 -17.45 -0.8797 MIMAT0000837 rno-miR-130b 362849 March2 uacggGAAAGUAGUAACGUGAc ||| :| :||||||| auaaaCUUAUAAAGUUGCACUg 2 18 399 420 [rn4:7:16193170-16193191:-] 0.6219 153 7 -17.12 -0.8865 MIMAT0000844 rno-miR-138 362849 March2 gccGGAC-UAA-GUGUUGUGG-UCGa |:|| ||| | | :|||| ||| cuuCUUGCAUUACUCUGCACCUAGCu 2 21 346 371 [rn4:7:16193219-16193244:-] 0.6219 122 0 -18.37 -0.1851 MIMAT0000854 rno-miR-152 362849 March2 ggUUCAAGACAGU-ACGUGACu || || | : ||||||| uaAACUUAUAAAGUUGCACUGc 2 20 400 421 [rn4:7:16193169-16193190:-] 0.6219 142 7 -11.00 -1.1650 MIMAT0000876 rno-miR-203 362849 March2 gaUCACCAGGAUUUGUAAAGUg ||| | || :||||||| aaAGUUGCACU--GCAUUUCAa 2 21 409 428 [rn4:7:16193162-16193181:-] 0.6219 149 7 -11.11 -1.0593 MIMAT0000888 rno-miR-218 362849 March2 ugUACCA-AUCUAGUUCGUGUu || || || : |||||||| uuAUUGUAUAUGGCAAGCACAg 2 20 191 212 [rn4:7:16193378-16193399:-] 0.5381 158 7 -17.88 -0.1941 MIMAT0000895 rno-miR-291a-3p 362849 March2 ccgUGUGUUUCACCU-UCGU-GAAa |||| |||| |||| ||| uugACACCCUUUGGACAGCAGCUUu 2 21 270 294 [rn4:7:16193296-16193320:-] 0.5800 123 0 -15.74 -0.2522 MIMAT0000903 rno-miR-320 362849 March2 agcGGGAGAGUUG-GGUCGAAAa ||||:| :|| ||||||| acaCCCUUUGGACAGCAGCUUUa 2 20 273 295 [rn4:7:16193295-16193317:-] 0.5800 162 7 -23.68 -0.3543 MIMAT0001534 rno-miR-448 362849 March2 uacCCUGUAG-GAUGUAUA-CGUu | ||||: :|::|||| ||| uuuGCACAUUAUUGUAUAUGGCAa 2 20 183 206 [rn4:7:16193384-16193407:-] 0.5381 126 0 -12.42 -0.8546 MIMAT0003119 rno-miR-224 362849 March2 auuugccuugGUGAUCACUGAAc |||| |||||| gcuuuacuggCACUCUUGACUUa 2 14 377 399 [rn4:7:16193191-16193213:-] 0.6219 125 6 -12.43 -0.1248 MIMAT0003122 rno-miR-370 362849 March2 uugguccaaggUGGGGUCGUCCg :::|||||||| ugggcuagaagGUUCCAGCAGGc 2 13 324 346 [rn4:7:16193244-16193266:-] 0.6219 148 7 -25.91 -0.2918 MIMAT0003123 rno-miR-377 362849 March2 gguuuucaACGGAAACACACUa || | ||||||| cugcucugUGACCCUGUGUGAa 2 15 141 162 [rn4:7:16193428-16193449:-] 0.5381 146 7 -11.65 -0.3549 MIMAT0005304 rno-miR-301b 362849 March2 cgaaacuguUAUGGUAACGUGAc ||| :||||||| uauaaacuuAUAAAGUUGCACUg 2 15 398 420 [rn4:7:16193170-16193192:-] 0.6219 150 7 -16.23 -0.8899 MIMAT0005309 rno-miR-384-5p 362849 March2 uguaacGGAUC--CUUAAC-AAAUGu ||||| |: ||| ||||| ucugcaCCUAGCUGGCUUGCUUUACu 2 18 359 384 [rn4:7:16193206-16193231:-] 0.6219 124 0 -13.06 -0.4379

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G100196 March2 Rattus norvegicus 362849

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score March2 RAID00242829 rno-miR-384-5p miRNA MIMAT0005309 March2 mRNA 362849 Prediction 0.1828 March2 RAID00343191 rno-miR-759 miRNA MIMAT0012856 March2 mRNA 362849 Prediction 0.1828 March2 RAID00722436 rno-miR-301a-3p miRNA MIMAT0000552 March2 mRNA 362849 Prediction 0.2202 March2 RAID00806715 rno-miR-148b-3p miRNA MIMAT0000579 March2 mRNA 362849 Prediction 0.2202 March2 RAID00860710 rno-miR-224-5p miRNA MIMAT0003119 March2 mRNA 362849 Prediction 0.1828 March2 RAID00874050 rno-miR-218a-5p miRNA MIMAT0000888 March2 mRNA 362849 Prediction 0.1828 March2 RAID00915235 rno-miR-152-3p miRNA MIMAT0000854 March2 mRNA 362849 Prediction 0.2202 March2 RAID00940344 rno-miR-130b-3p miRNA MIMAT0000837 March2 mRNA 362849 Prediction 0.2202 March2 RAID01108053 rno-miR-664-3p miRNA MIMAT0003382 March2 mRNA 362849 Prediction 0.1828 March2 RAID01352754 rno-miR-672-3p miRNA MIMAT0017312 March2 mRNA 362849 Prediction 0.1828 March2 RAID01789977 rno-miR-19a-3p miRNA MIMAT0000789 March2 mRNA 362849 Prediction 0.2202 March2 RAID01877048 rno-miR-19b-3p miRNA MIMAT0000788 March2 mRNA 362849 Prediction 0.2202 March2 RAID01913625 rno-miR-203a-3p miRNA MIMAT0000876 March2 mRNA 362849 Prediction 0.1828 March2 RAID01994060 rno-miR-130a-3p miRNA MIMAT0000836 March2 mRNA 362849 Prediction 0.2202 March2 RAID02313598 rno-miR-34c-5p miRNA MIMAT0000814 March2 mRNA 362849 Prediction 0.1828 March2 RAID02481835 rno-miR-93-5p miRNA MIMAT0000817 March2 mRNA 362849 Prediction 0.1828 March2 RAID02571574 rno-miR-138-5p miRNA MIMAT0000844 March2 mRNA 362849 Prediction 0.1828 March2 RAID02687698 rno-miR-148a-3p miRNA MIMAT0035725 March2 mRNA 362849 Prediction 0.1828 March2 RAID02802506 rno-miR-129-5p miRNA MIMAT0000600 March2 mRNA 362849 Prediction 0.1828 March2 RAID03130526 rno-miR-320-3p miRNA MIMAT0000903 March2 mRNA 362849 Prediction 0.1828 March2 RAID03216531 rno-miR-301b-3p miRNA MIMAT0005304 March2 mRNA 362849 Prediction 0.2202 March2 RAID03453767 rno-miR-370-3p miRNA MIMAT0003122 March2 mRNA 362849 Prediction 0.1828 March2 RAID03567531 rno-miR-377-3p miRNA MIMAT0003123 March2 mRNA 362849 Prediction 0.1828 March2 RAID03592416 rno-miR-448-3p miRNA MIMAT0001534 March2 mRNA 362849 Prediction 0.1828 March2 RAID03791524 rno-miR-291a-3p miRNA MIMAT0000895 March2 mRNA 362849 Prediction 0.1828