DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G098856 Aup1 Rattus norvegicus 680423

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Aup1 rno-miR-133a 27 52 -UGUCGACCAA-CUU---CCCCUGGUU :| || || ||: ||||:| AGCCGCAGGACGGAGACUGGGGGCA-- Aup1 rno-miR-181c 54 87 UGAGUGG------------CUGUCCAACUUACAA |||||| |:| || |||:|| CCUCACCCAGCUAACAACAGGCCGGAUGAGUGG- Aup1 rno-miR-199a 9 49 CUUGUCC-AUCAGA---CUUG------------UGACCC- |||||| |:|| ||:| |||||| AAACAGGAUGGUACCCAGAGCCGCAGGACGGAGACUGGGG Aup1 rno-miR-204 71 103 -UCCGUAU------CCUACUG--UUUCCCUU- |||| ||:||: |||||||: CAGGCCGGAUGAGUGGGUGGUAAAAAGGGAGG Aup1 rno-miR-207 33 55 UUCCCU-CCUCUCGGUCCUCUUCG- ||| ||||| |::||:| ||| --AGGACGGAGA-CUGGGGGCAGCC Aup1 rno-miR-211 71 103 -UCCG-----UUU-CCUACUG--UUUCCCUU- |||| :|: ||:||: |||||||: CAGGCCGGAUGAGUGGGUGGUAAAAAGGGAGG Aup1 rno-miR-212 27 50 CCGGCA--CUGACCUCUGACAAU- |||| ||| |||||||| : AGCCGCAGGAC-GGAGACUGGGGG Aup1 rno-miR-22 30 52 -UGUCAAGAAGUUGACCGUCGAA :||| | :||||| :|| CGCAGGACGGAGACUGGGGGCA- Aup1 rno-miR-24 25 46 GACAAGGACGACUUGACUC-GGU | || || |:|| ||| |: -AGAGCC-GCAGGACGGAGACUG Aup1 rno-miR-296 30 58 -UGUCCUAACUC---CCCCC--CGGGA- :||||| ||| ||||| ||||| CGCAGGACGGAGACUGGGGGCAGCCCUC Aup1 rno-miR-320 51 67 AAGCGGGAGAGUUGGGUCGAAAA |||||| |||||||| --AGCCCUC---ACCCAGCUA-- Aup1 rno-miR-324-3p 22 54 -GGUCGUCG------------UGGACCCCGUCACC |||| ||| ||: ||||||| CCCAG-AGCCGCAGGACGGAGACUGGGGGCAGC-- Aup1 rno-miR-331 32 52 AAGAUCCUAUCCG--GGUCCCCG- |||| || |::||||| ---CAGGAC-GGAGACUGGGGGCA Aup1 rno-miR-336 80 109 UCUGAUCUAUA------CCUUCCC-ACU- || |:|:|: ||:|||| ||: UGAGUGGGUGGUAAAAAGGGAGGGAUGGG Aup1 rno-miR-339 79 111 -ACUCGAGGACC----------UCCUGUCCCU ||||: ||| :|||::||| AUGAGUGGGUGGUAAAAAGGGAGGGAUGGGGC Aup1 rno-miR-343 83 106 AGACCCGUG-----UGCCUCCCUCU ||||: | ||||||| -GUGGGUGGUAAAAAGGGAGGGAU- Aup1 rno-miR-345 33 55 -CGUGAC-CUGAUCCCCAGUCGU | || | ||||:|||| |||| AGGACGGAGACUGGGGG-CAGCC Aup1 rno-miR-346 44 82 -UCUCCGUCCGUGAG--------------UCC-GUCUGU :|:|||| || ||| ||| |:||: UGGGGGCA-GCCCUCACCCAGCUAACAACAGGCCGGAUG Aup1 rno-miR-365 37 53 UAUUCCUAAAAAUCCCCGUAAU ||| |:|||||| ---CGGAGAC-UGGGGGCAG-- Aup1 rno-miR-370 40 77 -UUGGUCCAA---GGUG--GGGUCG-------UCCG- :||::|| || |||||| |||| AGACUGGGGGCAGCCCUCACCCAGCUAACAACAGGCC Aup1 rno-miR-378 29 50 UGUGUCCUGGACCUCAGUCCUC- |:|||||| |||| | ||:| CCGCAGGAC--GGAGACUGGGGG Aup1 rno-miR-431 30 53 ACGUACUGCCG--GACGUUCUGU- ||| ||||| ||| ::|:|| CGCAGGACGGAGACUG-GGGGCAG Aup1 rno-miR-485 42 59 CUUAAGUAGUGC-CGGUC-GGAGA | | | ||| |||| -------ACUGGGGGCAGCCCUCA Aup1 rno-miR-542-5p 10 30 GCACUGUACUACUA-GGGGCUC- ||| ||||:| ||| ||| ---AACAGGAUGGUACCCAGAGC Aup1 rno-miR-133a 28 52 uGUCGACCAACUUC---CCCUGGUu | || || |:|| |||: || gCCGCAGGACGGAGACTGGGGGCAg Aup1 rno-miR-181c 66 87 ugagUGGCUGUCCAACUUACaa || |:| || |||:|| aacaACAGGCCGGATGAGTGgg Aup1 rno-miR-199a 26 47 CUUGUCCAUCAGACUUGUGACCC ||:| | :| | |:| |||||| GAGCCGCAGGAC-GGAGACTGGG Aup1 rno-miR-204 72 101 UCCG---UAU---CCUAC--UGUUUCCCUu |||| ||: ||:|| | ||||||| AGGCCGGATGAGTGGGTGGTAAAAAGGGAg Aup1 rno-miR-207 32 53 uUCCCUCCUCUCGGUCCUCUUCG ||| ||||| |::||:| ||| cAGGACGGAGA-CTGGGGGCAGC Aup1 rno-miR-211 72 101 UCCG------UUUCCUAC--UGUUUCCCUu |||| |: ||:|| | ||||||| AGGCCGGATGAGTGGGTGGTAAAAAGGGAg Aup1 rno-miR-22 31 55 uGUCAAGAAGUUGA---CCGUCGaa ||| | :||| |||||| gCAGGACGGAGACTGGGGGCAGCcc Aup1 rno-miR-24 10 31 gacaaggACGACUUGACUCGGu || | | ||||| aacaggaTGGTACCCAGAGCCg Aup1 rno-miR-296 31 56 uGUCCUAACUC---CCCCC--CGGGA ||||| ||| ||||| ||||| gCAGGACGGAGACTGGGGGCAGCCCT Aup1 rno-miR-320 49 68 aagCGGGAGAGUUGGGUCGAaaa |||||| |||||||| gcaGCCCTC---ACCCAGCTaac Aup1 rno-miR-324-3p 29 55 GGUCGUCGUG-----GA-CCCCGUCacc || |||| || || ||||||| CC-GCAGGACGGAGACTGGGGGCAGccc Aup1 rno-miR-331 29 50 aagaUCCUAUC-CGGGUCCCCG |||| :| | |::||||| ccgcAGGACGGAGACTGGGGGC Aup1 rno-miR-336 72 102 UCUGAUCUA------UACC----UUCCCACu ||:| :||| :||| ||||| | AGGCCGGATGAGTGGGTGGTAAAAAGGGAGg Aup1 rno-miR-339 89 110 acucgaggaCCU-CCUGUCCCu ||| |||::||| ggtaaaaagGGAGGGATGGGGc Aup1 rno-miR-343 82 106 agACCCG-----UGUGCCUCCCUcu ||||: | | ||||||| agTGGGTGGTAAAAAGGGAGGGAtg Aup1 rno-miR-345 34 54 CGUGAC-CUGAUCCCCAGUCGu | || | |||| |||| |||| GGACGGAGACT-GGGGGCAGCc Aup1 rno-miR-346 25 55 UCUC--CGUCC-G----UGA-GUCCGUCUGu |||| ||||| | ||| :||||| | AGAGCCGCAGGACGGAGACTGGGGGCAGCCc Aup1 rno-miR-365 33 54 uauuccuaaaaAUCCCCGUaau |:|||||| aggacggagacTGGGGGCAgcc Aup1 rno-miR-370 47 75 uugGUCCAAGGUGGG------GUCGUCCG ||| :||||| || ||||| gggCAGCCCTCACCCAGCTAACAACAGGC Aup1 rno-miR-431 13 38 aCGUAC--UG---C-CGGACGUUCUGu | ||| || | ||| |||:||| aGGATGGTACCCAGAGCC-GCAGGACg Aup1 rno-miR-485 36 58 cuuaaguagugCCGGUC-GGAGa || ||| |||| acggagactggGGGCAGCCCTCa Aup1 rno-miR-542-5p 7 28 gcacUGUACUACUA-GGGGCUC ||| ||||:| ||| ||| agaaACAGGATGGTACCCAGAG Aup1 rno-miR-204 94 101 -------------UCCGUAUCCUACUG----------UUUCCCUU |||| |||||| |||||||: CCCAGCUAACAACAGGCC--GGAUGAGUGGGUGGUAAAAAGGGAGG Aup1 rno-miR-211 94 101 -------------UCCGUUUCCUACUG----------UUUCCCUU |||| |||||| |||||||: CCCAGCUAACAACAGGCC--GGAUGAGUGGGUGGUAAAAAGGGAGG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Aup1 RAID01073257 rno-miR-3541 miRNA MIMAT0017795 Aup1 mRNA 680423 Prediction 0.1828