DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000585 rno-miR-340-3p 140657 Faf1 ccgauauuucauugaCUCUGCCu ||||||| agcggcacgcgucaaGAGACGGg 2 9 40 62 [rn4:5:131394448-131394470:+] 0.6331 140 7 -17.96 -0.1740 MIMAT0000900 rno-miR-298 140657 Faf1 cccuUCUUGUCG-GGAGGAGACGg || || : :| ||||||| acucAGUUCAAUGUCACCUCUGCc 2 20 94 117 [rn4:5:131394502-131394525:+] 0.6331 146 7 -21.48 -0.9412 MIMAT0012827 rno-miR-1224 140657 Faf1 gaGGUGGAGGGGU-CAG-GAGUg |:|| | |:|: ||| |||| acCUACAUGCUCGUGUCACUCAg 2 20 77 99 [rn4:5:131394485-131394507:+] 0.6331 122 0 -17.99 -0.7933 MIMAT0000581 rno-miR-338 140657 Faf1 aguuguuuuagugacuACGACCu |||||| cugccucuugcaagauUGCUGGa 2 8 113 135 [rn4:5:131394521-131394543:+] 0.6331 120 6 -14.54 -0.1951 MIMAT0000844 rno-miR-138 140657 Faf1 gcCGGACUAAGUGUUGUGGUCGa | | |: || : ||||||| gaGACGGGCUCCU--CACCAGCc 2 22 55 75 [rn4:5:131394463-131394483:+] 0.6331 142 7 -19.62 -0.1379

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G052870 Faf1 Rattus norvegicus 140657

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Faf1 rno-let-7a 103 121 UUGAUAUGUUGGAUGAUGGAGU ||: |||| ||:|||| ---AAUGUCACCU-CUGCCUCU Faf1 rno-let-7b 91 121 UUGGUGUGU----------UGGAUGAUGGAGU :||| || |||| ||:|||| -GUCACUCAGUUCAAUGUCACCU-CUGCCUCU Faf1 rno-let-7c 84 121 UUG-GUAU-GU--------------UGGAUGAUGGAGU :| |:|: || |||| ||:|||| UGCUCGUGUCACUCAGUUCAAUGUCACCU-CUGCCUCU Faf1 rno-let-7d 103 122 UGAUACGUUGGAUGAUGGAGA- |||: |||| ||:||||| --AAUGUCACCU-CUGCCUCUU Faf1 rno-let-7e 103 121 UGAUAUGUUGGAGGAUGGAGU ||: ||||| |:|||| --AAUGUCACCUC-UGCCUCU Faf1 rno-miR-127 35 68 -UCGGU--UCG-----AG---UCUGCCU-AGGCU ||||| :|| || ||||||: ||| AAGCCAGCGGCACGCGUCAAGAGACGGGCUCCU- Faf1 rno-miR-134 23 50 -GG-GA-GACCAGUUGGUCA--GUGU- || || ||| |:|||| |||: GCCACUCCUGACAAGCCAGCGGCACGC Faf1 rno-miR-151* 47 70 AUGA-----UCUGACACUCGAGGAGCU :| |||| |:||||||| CGCGUCAAGAGAC---GGGCUCCUCA- Faf1 rno-miR-187 41 63 -GCCGA-CGUUGUGUUCUGUGCU- |||| ||: ||||| |||: GCGGCACGCGU--CAAGAGACGGG Faf1 rno-miR-28 50 69 GAGUUAUCUGACACUCGAGGAA |||| |||| |:|||||| GUCAAGAGAC---GGGCUCCUC Faf1 rno-miR-292-3p 24 49 UGUGAGU----UUUGGACCGCCGUGAA ||||| ||:|| ||||||| CCACUCCUGACAAGCCA-GCGGCACG- Faf1 rno-miR-296 1 27 UGUCCUAACUC-CC-CC-CCG--GGA ||| || |||| || || ||| || ACAUGACUGAGAGGUGGAGGCAGCCA Faf1 rno-miR-31 96 125 -GUCGA--UACGGU-----CGUAGAACGGA |||:| |||:|| || |||||| UCAGUUCAAUGUCACCUCUGCCUCUUGCA- Faf1 rno-miR-328 5 28 -UGCCUUCCCGUCUCUCCCGGUC || ||: ||::|||: |||| GACUGAGAGGUGGAGGCAGCCAC Faf1 rno-miR-340 3 20 CCGAUAUUUCAUUGACUCU--GCCU- |:||||||| :||| ---------AUGACUGAGAGGUGGAG Faf1 rno-miR-345 5 26 CGUGAC-CUGAUCC-CCAGUCGU |||| || || || |||| -GACUGAGAGGUGGAGG-CAGCC Faf1 rno-miR-346 15 52 -UCUCCGUCCGUGAGU------------CCGUCUGU- :||||||| ||||| |||| :|: UGGAGGCAGCCACUCCUGACAAGCCAGCGGCACGCGU Faf1 rno-miR-34b 95 120 GUUAGUCGA-UUAA--UGU-GACGGAU ||||:| ||| || |||||| --CUCAGUUCAAUGUCACCUCUGCCUC Faf1 rno-miR-34c 92 120 CGUUAGUCGA-UUGA--UGU-GACGGA- || ||||:| ||: || |||||| UCACUCAGUUCAAUGUCACCUCUGCCUC Faf1 rno-miR-351 42 71 GUCCG-----AGUUU----CCCGAGGAGUCCCU ||| ||||: |||||||||| -CGGCACGCGUCAAGAGACGGGCUCCUCAC--- Faf1 rno-miR-370 4 47 -UUGG---UCCAA-------GGUGG---------GGUCGUCCG :||: |||| ||||: ||||| ||| UGACUGAGAGGUGGAGGCAGCCACUCCUGACAAGCCAGC-GGCA Faf1 rno-miR-412 4 21 UGCCGAUCACCUGG---UCCACUUCA |||: |||||:|| ---------UGACUGAGAGGUGGAGG Faf1 rno-miR-422b 22 43 -CGGAA--GACUGAGGUUCAGGUCA ||| ||||| ||| |||| AGCCACUCCUGAC---AAG-CCAGC Faf1 rno-miR-485 95 122 CUUAAGU--AGUGCCGGU-----CGGAGA- ||| ||| |:|| |||||| ---CUCAGUUCAAUGUCACCUCUGCCUCUU Faf1 rno-miR-503 96 135 -GUCAUG--ACA----------AGGGCG-----ACGAU- |||| ||| || || ||||: UCAGUUCAAUGUCACCUCUGCCUCUUGCAAGAUUGCUGG Faf1 rno-miR-540 100 120 -GGUCCUAGCUGGAGACUGGA- :|| :|| ||||||| ||| UUCAAUGUC-ACCUCUG-CCUC Faf1 rno-miR-98 96 121 UUGUUAUGUUGAAU----GAUGGAGU ||:| |||: ||:|||| -UCAGUUCAAUGUCACCUCUGCCUCU Faf1 rno-let-7a 100 120 uuGAUAUGUUGGAUGAUGGAGu | ||:: |||| ||:|||| ttCAATGTCACCT-CTGCCTCt Faf1 rno-let-7b 100 120 uuGGUGUGUUGGAUGAUGGAGu | |::: |||| ||:|||| ttCAATGTCACCT-CTGCCTCt Faf1 rno-let-7c 100 120 uuGGUAUGUUGGAUGAUGGAGu | ||:: |||| ||:|||| ttCAATGTCACCT-CTGCCTCt Faf1 rno-let-7d 101 120 uGAUACGUUGGAUGAUGGAGA | |||: |||| ||:||||| tCAATGTCACCT-CTGCCTCT Faf1 rno-let-7e 101 120 uGAUAUGUUGGAGGAUGGAGu | ||:: |||| ||:|||| tCAATGTCACCT-CTGCCTCt Faf1 rno-miR-127 40 68 UCG--GUUCG-AG---UCUG-CCUAGGcu ||| || || || |||| || ||| AGCGGCACGCGTCAAGAGACGGGCTCCtc Faf1 rno-miR-134 10 28 gggagACCAGUUGGUCAGUGu ||| |: ||| ||| agaggTGG--AGGCAGCCACt Faf1 rno-miR-138 59 75 cuaaGUGUUGUGGUCGa | | ||||||| cgggCTCCTCACCAGCc Faf1 rno-miR-146 84 105 uuGGGUACCUUAAGUCAAGagu |:|:|| | ||||||| tgCTCGTGTCACTCAGTTCaat Faf1 rno-miR-151* 52 70 augaUCUGACACUCGAGGAGcu |||| |:||||||| caagAGAC---GGGCTCCTCac Faf1 rno-miR-187 39 61 GCCGACGU-UGU-GUUCUGUGCu | || ||| :|: ||||| ||| CAGCGGCACGCGTCAAGAGACGg Faf1 rno-miR-292-3p 24 49 uGUGAG---UUUUGGACCGCCGUGaa ||||| | || | ||||||| cCACTCCTGACAAGCCAGCGGCACgc Faf1 rno-miR-298 95 117 ccuUCUUGUCG-GGAGGAGACGG || || : :| |||||||| ctcAGTTCAATGTCACCTCTGCC Faf1 rno-miR-31 97 125 GUCGA--UACGGU-----CGUAGAACGga |||:| |||:|| || |||||| CAGTTCAATGTCACCTCTGCCTCTTGCaa Faf1 rno-miR-328 6 27 UGCCUUCCCGUCUCUCC--CGGUc || ||: ||: :|||| |||| ACTGAGAGGT--GGAGGCAGCCAc Faf1 rno-miR-340 40 62 ccgauauuucauugaCUCUGCCu ||||||| agcggcacgcgtcaaGAGACGGg Faf1 rno-miR-340 1 18 ccgauauuucAUUGA--CUCUGCCU |:||| |||::||| -------acaTGACTGAGAGGTGGA Faf1 rno-miR-345 4 25 cgUGAC-CU-GAUCCCCAGUCGu |||| || |:| || |||| tgACTGAGAGGTGGAGG-CAGCc Faf1 rno-miR-346 10 26 UCUCCGUCCGUGAGUCCGUCUGU |||||: || |||||| || AGAGGT-GG-----AGGCAGCCA Faf1 rno-miR-34b 93 119 GUUAGUCGA-UUA-A-U-GUGACGGAu || ||||:| ||| | | | |||||| CACTCAGTTCAATGTCACCTCTGCCTc Faf1 rno-miR-351 45 73 GUCCG-AGUUU----CCCGAGGAGUcccu || || ||||: |||||||||| CACGCGTCAAGAGACGGGCTCCTCAccag Faf1 rno-miR-370 22 46 UUGGUCCAAGG--UG--GGGUCGUCcg |:||| ||| || |||||:| AGCCA--CTCCTGACAAGCCAGCGGca Faf1 rno-miR-412 1 20 ugccgaucacCUGG---UCCACUUCa |||: |||||:|| ------acatGACTGAGAGGTGGAGg Faf1 rno-miR-422b 23 42 CG--GAAGACUGAGGUUCAGGUCa || || |||| |||| |||| GCCACTCCTGA---CAAG-CCAGc Faf1 rno-miR-485 97 120 cUUAAGU---AGUGCCGGUCGGAGA |:|||| |||| :| |||||| cAGTTCAATGTCAC-CTCTGCCTCT Faf1 rno-miR-503 97 118 GUCAUG--ACAAGGGCGACGau |||| | ||| || |||| CAGTTCAATGTCACCTCTGCct Faf1 rno-miR-540 101 118 gGUCCUAGCUGGAGACUGGA || :|| ||||||| ||| tCAATGTC-ACCTCTG-CCT Faf1 rno-miR-98 100 120 uuGUUAUGUUGAAUGAUGGAGu ||||:: || | ||:|||| ttCAATGTCACCT-CTGCCTCt Faf1 rno-miR-138 68 75 ----------------------------CUAAGUGUUGUGGUCGA | || | ||||||| ACAAGCCAGCGGCACGCGUCAAGAGACGGGCUC-CU-CACCAGCC Faf1 rno-miR-298 110 117 CCUUCUUGU-CGGGA--------------------GGAGACGG ||| ||:| |||||||| CCACCUACAUGCUCGUGUCACUCAGUUCAAUGUCACCUCUGCCU Faf1 rno-miR-340 55 62 -----------------------CCGAUAUUUCAUUGACUCUGCCU ||| || |||||||: GCAGCCACUCCUGACAAGCCAGCGGCACGC--GUCAA-GAGACGGGC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Faf1 RAID00728296 rno-miR-203b-3p miRNA MIMAT0017800 Faf1 mRNA 140657 Prediction 0.1828 Faf1 RAID01169363 rno-miR-138-5p miRNA MIMAT0000844 Faf1 mRNA 140657 Prediction 0.1828 Faf1 RAID03481568 rno-miR-298-5p miRNA MIMAT0000900 Faf1 mRNA 140657 Prediction 0.1828 Faf1 RAID03576789 rno-miR-338-3p miRNA MIMAT0000581 Faf1 mRNA 140657 Prediction 0.1828