DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000604 rno-miR-350 83809 Nsfl1c cacuuucacauACCC-GAAACACUu |||| :||||||| guuguauuuccUGGGUUUUUGUGAu 2 14 160 184 [rn4:3:141823693-141823717:+] 0.6468 152 7 -15.69 -1.0817 MIMAT0004733 rno-miR-136* 83809 Nsfl1c ucuGAGUAAACUCUGCUACUAc || : || ::|||||| uucCUGGGUUUUUGUGAUGAUc 2 20 167 188 [rn4:3:141823700-141823721:+] 0.6468 131 6 -10.31 -0.1124 MIMAT0000847 rno-miR-142-5p 83809 Nsfl1c ucaucacgaaagaUGAAAUac |||||| ugaugaucaauggACUUUAaa 3 9 181 201 [rn4:3:141823714-141823734:+] 0.6468 120 0 -5.61 -0.2002 MIMAT0012834 rno-miR-592 83809 Nsfl1c uguaguagcguauaacUGUGUUa |||||| agaaaaaaaauaaaaaACACAAa 2 8 201 223 [rn4:3:141823734-141823756:+] 0.5958 120 6 -5.10 -0.9968 MIMAT0012844 rno-miR-665 83809 Nsfl1c ucccuggagucGGAGGACCa ::|||||| cuuuaguuguaUUUCCUGGg 2 10 155 174 [rn4:3:141823688-141823707:+] 0.6468 125 6 -15.86 -0.3422 MIMAT0001619 rno-miR-322 83809 Nsfl1c agguuuuguacUUAACGACGac |: |||||| -----ccgcccAGCUGCUGCcu 3 12 1 17 [rn4:3:141823534-141823550:+] 0.6978 123 0 -13.81 -0.1541 MIMAT0000600 rno-miR-129 83809 Nsfl1c cguucgggucuggcGUUUUUc |||||| aaaaauaaaaaacaCAAAAAa 2 8 206 226 [rn4:3:141823739-141823759:+] 0.5958 120 6 -3.02 -0.2478 MIMAT0000824 rno-miR-103 83809 Nsfl1c aguaucgggacauguuACGACGa |||||| -------ccgcccagcUGCUGCc 2 8 1 16 [rn4:3:141823534-141823549:+] 0.6978 120 6 -13.35 -0.2171 MIMAT0000826 rno-miR-107 83809 Nsfl1c acuaucgggacauguuACGACGa |||||| -------ccgcccagcUGCUGCc 2 8 1 16 [rn4:3:141823534-141823549:+] 0.6978 120 6 -13.35 -0.2171 MIMAT0000842 rno-miR-136 83809 Nsfl1c agguAGUAGUUUUGUUUACCUca |::| | :|: |||||| guuuUUGUGAUGAUCAAUGGAcu 3 20 174 196 [rn4:3:141823707-141823729:+] 0.6468 135 0 -7.03 -0.1395 MIMAT0003176 rno-miR-539 83809 Nsfl1c ugugugguuccuauuAAAGAGg |||||| caguuggacauuuguUUUCUCu 2 8 135 156 [rn4:3:141823668-141823689:+] 0.6468 120 6 -8.04 -0.1350 MIMAT0003199 rno-miR-381 83809 Nsfl1c cucucgaacgggAACAUAu |||||| uuuucucuuuagUUGUAUu 2 8 149 167 [rn4:3:141823682-141823700:+] 0.6468 120 6 -5.59 -0.1040 MIMAT0003383 rno-miR-497 83809 Nsfl1c auguuugGUGUCACACGACGac | ||| |||||| ----ccgCCCAG-CUGCUGCcu 3 16 1 17 [rn4:3:141823534-141823550:+] 0.6978 125 0 -15.76 -0.1511 MIMAT0005339 rno-miR-873 83809 Nsfl1c uccucugaguguucAAGGACg |||||| cucuuuaguuguauUUCCUGg 2 8 153 173 [rn4:3:141823686-141823706:+] 0.6468 120 6 -9.77 -0.2020

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G053311 Nsfl1c Rattus norvegicus 83809

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Nsfl1c rno-let-7a 5 21 UUGAUAUGUUGGAUGAUGGAGU- ||: ||:||:||||| ------CCAG-CUGCUGCCUCAC Nsfl1c rno-let-7b 1 21 UUGGUGUGUUGGAUGAUGGAGU- ||:| ||: ||:||:||||| --CCGCCCAG-CUGCUGCCUCAC Nsfl1c rno-let-7c 1 21 UUGGUAUGUUGGAUGAUGGAGU- ||: ||: ||:||:||||| --CCGCCCAG-CUGCUGCCUCAC Nsfl1c rno-let-7d 2 20 UGAUACGU-UGGAUGAUGGAGA || | ||:||:|||| ----CGCCCAGCUGCUGCCUCA Nsfl1c rno-let-7e 40 76 -UGAUAU--GU--------------UGGAGGAUGGAGU |||:|: || |||||||:|| GACUGUGGCCAUGCCCGUGGGGAUUACCUCCUGCCC-- Nsfl1c rno-let-7f 5 21 UUGAUAUGUUAGAUGAUGGAGU- ||: ||:||:||||| ------CCAG-CUGCUGCCUCAC Nsfl1c rno-let-7i 2 21 UGUCGUGUUUGAUGAUGGAGU- || | |:||:||:||||| --CGC-CCAGCUGCUGCCUCAC Nsfl1c rno-miR-132 38 66 -GCUGGUACCG--------ACAUCUGACAAU :|||::|||| || :||:| AUGACUGUGGCCAUGCCCGUGGGGAUUA--- Nsfl1c rno-miR-140* 38 61 -ACAGGCACCAAGAUGGGACACCAU || |:|||| |:||| |||| AUGACUGUGGCCAUGCCC-GUGGG- Nsfl1c rno-miR-143 86 111 ACUCGAU---GUCACGAAGUAGAGU- |||| |||||| |:||||: -UAGCUCUUCCAGUGCCACGUCUCGU Nsfl1c rno-miR-17 66 95 UGAUGGACGU--GACAU-----UCGUGAAAC || ||||| ||||| ||| ||| CCU-CCUGCCCCCUGUACACCUAGCUCUUC- Nsfl1c rno-miR-183 89 104 GUCACUUAAGAUGGUCACGGUAU ||| ||||||||| -------CUCUUCCAGUGCCAC- Nsfl1c rno-miR-184 87 115 -UGGGAAUAGUCA------AGAGGCAGGU- :|:||| |||| |||| ||||: AGCUCUUC-CAGUGCCACGUCUC-GUCCGU Nsfl1c rno-miR-196a 47 70 -GGUUGUUGUAC-UUUGAUGGAU ||| |:|| ::|:||||| GCCAUGCCCGUGGGGAUUACCUC Nsfl1c rno-miR-196b 47 70 -GGUUGUUGU---CCUUUGAUGGAU ||| :| ||::|:||||| GCCAU--GCCCGUGGGGAUUACCUC Nsfl1c rno-miR-24 27 52 GACA-AGGACG-ACUUGAC-UCGGU- ||| ||| ||| ||| :|||| AUGUGUCCCCCAUGA-CUGUGGCCAU Nsfl1c rno-miR-31 85 113 -GUCGA------UACGGUCGUAGAACGGA :|||| :||||| |:||| |:| CUAGCUCUUCCAGUGCCA-CGUCUCGUCC Nsfl1c rno-miR-320 70 92 AAGCGGGAGAGU--UGGGUCGAAAA :|||| || |||:|||| -CUGCCCCCUGUACACCUAGCUC-- Nsfl1c rno-miR-324-5p 46 75 UGUGGUUACGGGAUCCCCU--------ACGC :|| |||||| ||||| ||| -GGCC-AUGCCCGUGGGGAUUACCUCCUGCC Nsfl1c rno-miR-331 41 63 AAGAU-CCUAUCCGGGU-CCCCG ||: || ||||: |||| -ACUGUGGCCAUGCCCGUGGGGA Nsfl1c rno-miR-34a 80 104 UUGUUGGUCGAUUCUGUGACGGU- ||| |:|||| || ||||| UACACCUAGCUCUUCCAGUGCCAC Nsfl1c rno-miR-34b 5 19 GUUAGUCGAUUAAUGUGACGGAU ||||| :|||||| ---CCAGCU------GCUGCCUC Nsfl1c rno-miR-34c 5 19 CGUUAGUCGAUUGAUGUGACGGA- ||||| :|||||| ----CCAGCU------GCUGCCUC Nsfl1c rno-miR-350 158 185 CACUUUC-ACAU-----ACCC-GAAACACUU || |||| |||| :||||||| ----UAGUUGUAUUUCCUGGGUUUUUGUGAU Nsfl1c rno-miR-370 98 124 UUGGUCCA-AGGUGGGGUCGU--CCG :||| || || || :||| || UGCCACGUCUCGUCCGUAGCUCUGGA Nsfl1c rno-miR-422b 71 100 -CGGAAGAC--------UGAGGUUCAGGUCA- ||| ||| :|||: |||||| UGCCCCCUGUACACCUAGCUCU---UCCAGUG Nsfl1c rno-miR-497 2 17 AUGUUUGGUGUCACACGACGAC :|| ||| |||||| ----CGCC-CAGC-UGCUGCC- Nsfl1c rno-miR-503 94 120 -GUCAUGA--CAA---GGGCGACGAU ||||:| || :|||: ||| CCAGUGCCACGUCUCGUCCGUAGCUC Nsfl1c rno-miR-7 81 98 UUGUUUUAGU-GAUC-AGAAGGU- || |||| ||||||| -------ACACCUAGCUCUUCCAG Nsfl1c rno-miR-7b 81 98 UUGUUUUAGUGU-UC-AGAAGGU- ||| || ||||||| -------ACACCUAGCUCUUCCAG Nsfl1c rno-miR-98 5 21 UUGUUAUGUUGAAUGAUGGAGU- ||:| |:||:||||| ------CCAGC-UGCUGCCUCAC Nsfl1c rno-let-7a 1 19 uugauauGUUGGAUGAUGGAGU | | ||:||:||||| ---ccgcCCAGCTGCTGCCTCA Nsfl1c rno-let-7d 1 19 ugauacGUUGGAUGAUGGAGa | | ||:||:|||| --ccgcCCAGCTGCTGCCTCa Nsfl1c rno-let-7e 41 70 UGAUAU--GUUGGAG-------GAUGGAGu |||:|: || | | :|||||| ACTGTGGCCATGCCCGTGGGGATTACCTCc Nsfl1c rno-let-7f 1 19 uugauauGUUAGAUGAUGGAGU | | ||:||:||||| ---ccgcCCAGCTGCTGCCTCA Nsfl1c rno-let-7i 1 19 uGUCGUGUUUGAUGAUGGAGU | || | |:||:||:||||| -CCGC-CCAGCTGCTGCCTCA Nsfl1c rno-miR-132 22 47 gcuGGUACCGACA-----U-CUGACAau |:||| ||| | |||||| tccCTATG--TGTCCCCCATGACTGTgg Nsfl1c rno-miR-140* 20 49 acAGGCA-CCA-AGAUGG----GACACCau ||| | || || || |||||| ccTCCCTATGTGTCCCCCATGACTGTGGcc Nsfl1c rno-miR-143 85 109 acUCG---AUGUCACGAAGUAGAGu ||| | |||||| |:|||| ctAGCTCTTCCAGTGCCACGTCTCg Nsfl1c rno-miR-17 65 95 UGAUGGAC--GUGACAU-----UCGUGAAac || |||| | ||||| ||| ||| ACCTCCTGCCCCCTGTACACCTAGCTCTTcc Nsfl1c rno-miR-183 82 104 GUCACUUAAGAUGGUCACGGUau || |: ||| ||||||||| CACCTAGCTCTTCCAGTGCCAcg Nsfl1c rno-miR-184 88 113 uGGGAAUAGUCAAG----AG-GCAGGu |:||| |||| | || ||||| gCTCTT-CCAGTGCCACGTCTCGTCCg Nsfl1c rno-miR-196a 48 69 GGUUGUUGUA-CUUUGAUGGAu ||| |:| |::|:||||| CCATGCCCGTGGGGATTACCTc Nsfl1c rno-miR-196b 48 69 GGU-UGUUGUCCUUUGAUGGAu ||| :| ||::|:||||| CCATGCCCGTGGGGATTACCTc Nsfl1c rno-miR-30d 132 154 GAAGGUCAGCCCCU--ACAAAUGu ||| ||||:|| | ||||| | CTT-CAGTTGGACATTTGTTTTCt Nsfl1c rno-miR-31 86 112 gUCGAUACGGUC-----GUAGAACGGa |||| | |||| |:||| |:| tAGCTCTTCCAGTGCCACGTCTCGTCc Nsfl1c rno-miR-320 71 93 AAGCGGGAGAGUUGGGUCGAAAA | | |||| | |||:|||| || TGCCCCCTGTACACCTAGCTCTT Nsfl1c rno-miR-324-5p 45 66 uguGGUUACGGGAUCCCCUAcgc || |||||| |||||| tggCC-ATGCCCGTGGGGATtac Nsfl1c rno-miR-331 40 62 aaGAU-CCUAUCCGGGU-CCCCg ||: || | ||||: |||| gaCTGTGGCCATGCCCGTGGGGa Nsfl1c rno-miR-34b 2 18 guuaGUCGAUUAAUGUGACGGAu ||||| :|||||| cgccCAGCT------GCTGCCTc Nsfl1c rno-miR-34c 1 17 cguuaGUCGAUUGAUGUGACGGA |: | |:| ::|||||| ----cCGCCCAGC--TGCTGCCT Nsfl1c rno-miR-350 154 184 cacuuUC-ACAU-----ACCC-GAAACACUu || |||| |||| :||||||| tctttAGTTGTATTTCCTGGGTTTTTGTGAt Nsfl1c rno-miR-370 117 142 uuGGUCCAAGG---UGGGGUCGUCCg |::| |||: ||::|||: || ctCTGGATTCTTAGACTTCAGTTGGa Nsfl1c rno-miR-422b 72 98 CGGAAGAC-UGAGGUUC----AGGUCA ||| ||| || || || |||||| GCCCCCTGTACACCTAGCTCTTCCAGT Nsfl1c rno-miR-497 1 17 auguuuGGUGUCACACGACGac || ||| |||||| ---ccgCC-CAG-CTGCTGCct Nsfl1c rno-miR-503 95 119 GUCAUG--ACA-AG--GGCGACGAu ||||:| || || |||: ||| CAGTGCCACGTCTCGTCCGTAGCTc Nsfl1c rno-miR-7 74 96 uuguuuuaGU-GAUC-AGAAGGU || |||| ||||||| cccctgtaCACCTAGCTCTTCCA Nsfl1c rno-miR-7b 74 96 uuguuuuaGU-GUUC-AGAAGGU || | || ||||||| cccctgtaCACCTAGCTCTTCCA Nsfl1c rno-miR-98 1 19 uuguuauGUUGAAUGAUGGAGU ||:| |:||:||||| --ccgccCAGC-TGCTGCCTCA Nsfl1c rno-miR-350 177 184 CACUU------------UCA-CAU-----ACCC-GAAACACUU ||| ||| |||| :||||||| ACAUUUGUUUUCUCUUUAGUUGUAUUUCCUGGGUUUUUGUGAU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nsfl1c RAID00786931 rno-miR-129-5p miRNA MIMAT0000600 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID01031819 rno-miR-107-3p miRNA MIMAT0000826 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID01111787 rno-miR-326-5p miRNA MIMAT0017028 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID02269907 rno-miR-539-5p miRNA MIMAT0003176 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID02403279 rno-miR-6314 miRNA MIMAT0025047 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID02431394 rno-miR-873-5p miRNA MIMAT0005339 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID02527156 rno-miR-136-5p miRNA MIMAT0000842 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID02609618 rno-miR-322-5p miRNA MIMAT0001619 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID03501686 rno-miR-350 miRNA MIMAT0000604 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID03875865 rno-miR-381-3p miRNA MIMAT0003199 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID04003127 rno-miR-497-5p miRNA MIMAT0003383 Nsfl1c mRNA 83809 Prediction 0.1828 Nsfl1c RAID04026406 rno-miR-103-3p miRNA MIMAT0000824 Nsfl1c mRNA 83809 Prediction 0.1828