DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000570 rno-miR-331 29192 Psen1 aagauccuaucCGGGUCCCCg |:||||||| aauccugcacuGUCCAGGGGg 2 11 438 458 [rn4:6:107776795-107776815:+] 0.5646 146 7 -19.85 -0.1081 MIMAT0000574 rno-miR-140* 29192 Psen1 ggcACCAAGAUG--GGACACCAu || |||: :||||||| cacUGACACUAUUAUCUGUGGUu 2 19 596 618 [rn4:6:107776953-107776975:+] 0.5369 145 7 -17.55 -0.6283 MIMAT0004734 rno-miR-138* 29192 Psen1 gggaccACAACACUUCA-UCGGc || ||||||| |||| guuaaaUGAAGUGAAGUGAGCCa 2 17 363 385 [rn4:6:107776720-107776742:+] 0.5646 128 0 -16.98 -0.6548 MIMAT0000894 rno-miR-291a-5p 29192 Psen1 ucucuccCGGAGGUGAAACUAc | :||: ||||||| cauggauGAUUCUUCUUUGAUu 2 16 18 39 [rn4:6:107776375-107776396:+] 0.5655 151 7 -12.28 -0.9683 MIMAT0005282 rno-miR-872 29192 Psen1 ggacuuGAUUGUU--CAUUGGAa ||:| |: ||||||| uuuaucCUGAGAGUUGUAACCUc 2 16 661 683 [rn4:6:107777018-107777040:+] 0.5369 146 7 -18.45 -0.1693 MIMAT0005328 rno-miR-673 29192 Psen1 gaggUUC-CUGGCC-UCGA-CACUc ||| ||| || :||| |||| auuaAAGUGACGGGUGGCUGGUGAa 2 19 1023 1047 [rn4:6:107777380-107777404:+] 0.5369 124 0 -19.33 -0.1515 MIMAT0005329 rno-miR-674-5p 29192 Psen1 augugGUGAGGGUAGAGUCACg |: | :|| ||||||| ucggaCGAUGUCA-CUCAGUGa 2 18 226 246 [rn4:6:107776583-107776603:+] 0.5646 147 7 -18.39 -0.7519 MIMAT0005333 rno-miR-742 29192 Psen1 aaauggguuguaCCACCGAAAg ||||||||| ggaugaauuuggGGUGGCUUUa 2 11 643 664 [rn4:6:107777000-107777021:+] 0.5369 150 7 -15.83 -0.1551 MIMAT0005333 rno-miR-742 29192 Psen1 aaauGGGUUGUACCACCGAAAg :|||:| | ||||||| cgacUCCAGC-U--UGGCUUUg 2 19 116 134 [rn4:6:107776473-107776491:+] 0.5646 145 7 -16.00 -0.1345 MIMAT0012825 rno-miR-105 29192 Psen1 ugGUGUCUGUAGA--CUCGUGAAc ::| |: ||| ||||||| gcUGCUGGGCUCUACCAGCACUUu 2 21 294 317 [rn4:6:107776651-107776674:+] 0.5646 143 7 -16.82 -0.1025 MIMAT0012827 rno-miR-1224 29192 Psen1 gagguggAGGGGUCAGGAGUg |||: ||||||| augauugUCCUGUGUCCUCAg 2 15 83 103 [rn4:6:107776440-107776460:+] 0.5646 150 7 -17.51 -0.1695 MIMAT0012860 rno-miR-496 29192 Psen1 cucuaacCGGUAC-AUUAUGAGu |: ||| ||||||| accucauGUGAUGCAAAUACUCc 2 16 919 941 [rn4:6:107777276-107777298:+] 0.5369 146 7 -11.73 -0.1441 MIMAT0000573 rno-miR-140 29192 Psen1 gaugguaucccAUUUUGGUGac ||||||||| ggaaaaaaaaaUAAAACCACaa 3 12 1177 1198 [rn4:6:107777534-107777555:+] 0.5369 135 0 -10.39 -0.2294 MIMAT0000579 rno-miR-148b-3p 29192 Psen1 uguuUCAAGACACUACGUGACu || | | ||||||| cccuAGCUGAAUCCUGCACUGu 2 19 429 450 [rn4:6:107776786-107776807:+] 0.5646 142 7 -14.06 -0.1191 MIMAT0000581 rno-miR-338 29192 Psen1 agUUGUU-UUAGUGACUACGACCu :|||| :| :| ||||||| gaGACAAGGACUAAGUAUGCUGGc 2 22 264 287 [rn4:6:107776621-107776644:+] 0.5646 152 7 -16.43 -0.1746 MIMAT0000600 rno-miR-129 29192 Psen1 cguucgggucuggcGUUUUUc |||||| gauuaucagaaaaaCAAAAAc 2 8 36 56 [rn4:6:107776393-107776413:+] 0.5655 120 6 -8.87 -0.1021 MIMAT0000602 rno-miR-20a 29192 Psen1 gaugGACGUGAUAU--UCGUGAAAu ||| :|| || |||||||| gcugCUGGGCUCUACCAGCACUUUg 2 20 294 318 [rn4:6:107776651-107776675:+] 0.5646 162 7 -23.69 -0.1737 MIMAT0000606 rno-miR-7a 29192 Psen1 ugUUGUUUUAGUGAUCAGAAGGu |:||:|: ::| ||||||| caAGCAGAGCUGC-CGUCUUCCa 2 22 384 405 [rn4:6:107776741-107776762:+] 0.5646 155 7 -20.90 -0.2867 MIMAT0000780 rno-miR-7b 29192 Psen1 ugUUGUUUUAGUGUUCAGAAGGu |:||:|: ::| ||||||| caAGCAGAGCUGC-CGUCUUCCa 2 22 384 405 [rn4:6:107776741-107776762:+] 0.5646 155 7 -20.82 -0.2867 MIMAT0000786 rno-miR-17-5p 29192 Psen1 gaugGACGUGACAU--UCGUGAAAc ||| :|| || |||||||| gcugCUGGGCUCUACCAGCACUUUg 2 20 294 318 [rn4:6:107776651-107776675:+] 0.5646 162 7 -23.56 -0.1754 MIMAT0000791 rno-miR-22 29192 Psen1 ugucaagaaGUUGACCGUCGAa ||| ||||||| gacagcagaCAA--GGCAGCUc 2 14 863 882 [rn4:6:107777220-107777239:+] 0.5369 142 7 -16.21 -0.1616 MIMAT0000810 rno-miR-31 29192 Psen1 gucGAUACGGUCGUAGAACGGa | ||||| ::||||||| auaCAAUGCC--UGUCUUGCCc 2 20 1134 1153 [rn4:6:107777491-107777510:+] 0.5369 156 7 -19.56 -0.1220 MIMAT0000817 rno-miR-93 29192 Psen1 gauggaCGUGCUUGUCGUGAAAc || | | ||||||||| ugcuggGCUCUACCAGCACUUUg 2 18 296 318 [rn4:6:107776653-107776675:+] 0.5646 161 7 -21.83 -0.1771 MIMAT0000825 rno-miR-106b 29192 Psen1 uaGACGUGACA--GUCGUGAAAu ||| :|| | ||||||||| ugCUGGGCUCUACCAGCACUUUg 2 20 296 318 [rn4:6:107776653-107776675:+] 0.5646 162 7 -22.01 -0.1754 MIMAT0000827 rno-miR-122 29192 Psen1 guUUG-UGGUAACAGUG-UGAGGu |:| | || ||||| ||||| ucAGCGAACAAAGUCACGACUCCa 2 21 100 123 [rn4:6:107776457-107776480:+] 0.5646 127 0 -24.07 -0.3718 MIMAT0000838 rno-miR-132 29192 Psen1 gcugguaccGACA--UCUGACAAu |||| ||||||| aagcgcucuCUGUCCUGACUGUUc 2 14 1046 1069 [rn4:6:107777403-107777426:+] 0.5369 144 7 -16.42 -0.2591 MIMAT0000854 rno-miR-152 29192 Psen1 gguUCAAGACAGUACGUGACu || | || ||||||| ccuAGCUGAAUCCUGCACUGu 2 19 430 450 [rn4:6:107776787-107776807:+] 0.5646 150 7 -16.01 -0.1191 MIMAT0000863 rno-miR-186 29192 Psen1 ucGGGUUU--U-CCUCUUAAGAAac |:||:| | ||| :|||||| caCUCAGACCAUGGAUGAUUCUUcu 3 21 9 33 [rn4:6:107776366-107776390:+] 0.5655 138 0 -15.03 -0.1881 MIMAT0000868 rno-miR-193 29192 Psen1 ugacccugaaacaUCCGGUCAa |||||||| ccauuucuucccaAGGCCAGUc 2 10 620 641 [rn4:6:107776977-107776998:+] 0.5369 145 7 -15.15 -0.3146 MIMAT0000883 rno-miR-212 29192 Psen1 accggcacugaccuCUGACAAu ||||||| gcgcucucuguccuGACUGUUc 2 9 1048 1069 [rn4:6:107777405-107777426:+] 0.5369 140 7 -14.12 -0.2591 MIMAT0000885 rno-miR-214 29192 Psen1 gaCG-GACAGACACGGAC-GACa || || ||||| |||| ||| aaGCGCUCUCUGU-CCUGACUGu 2 20 1046 1067 [rn4:6:107777403-107777424:+] 0.5369 128 0 -22.58 -0.1899 MIMAT0000895 rno-miR-291a-3p 29192 Psen1 ccguguguuucaccuUCGUGAAa ||||||| cugcugggcucuaccAGCACUUu 2 9 295 317 [rn4:6:107776652-107776674:+] 0.5646 140 7 -15.17 -0.1046 MIMAT0001633 rno-miR-451 29192 Psen1 uugAGUCAUUACCAUUGCCAAa | | || | ||||||| aagUAACUACAGAAAACGGUUu 2 20 186 207 [rn4:6:107776543-107776564:+] 0.5646 147 7 -14.15 -0.5353 MIMAT0003119 rno-miR-224 29192 Psen1 auuugccuugGUGAUCACUGAAc ||: |||||||| accccugucaCAUCAGUGACUUu 2 14 554 576 [rn4:6:107776911-107776933:+] 0.5078 153 7 -13.83 -0.3302 MIMAT0003176 rno-miR-539 29192 Psen1 ugUGUGGUUCC-UAUUAAAGAGg | |: | || | ||||||| ugAAAUGAUGGAACUAUUUCUCa 2 21 708 730 [rn4:6:107777065-107777087:+] 0.5369 147 7 -11.02 -0.8513 MIMAT0003179 rno-miR-542-3p 29192 Psen1 aaagucaauaguuaGACAGUGu ||||||| acaagccccaacccCUGUCACa 2 9 544 565 [rn4:6:107776901-107776922:+] 0.4786 140 7 -13.74 -0.2911 MIMAT0003210 rno-miR-363 29192 Psen1 auguCUAC--CUAU--GGCAC-GUUAa |||| ||| ||||| |||| auguGAUGCAAAUACUCCGUGUCAAUc 2 19 924 950 [rn4:6:107777281-107777307:+] 0.5369 120 0 -13.31 -0.2235 MIMAT0003211 rno-miR-20b-5p 29192 Psen1 uggaCGUGAUACUCGUGAAAc || ||| |||||||| cuggGCUCUACCAGCACUUUg 2 18 298 318 [rn4:6:107776655-107776675:+] 0.5646 161 7 -19.45 -0.1737 MIMAT0005284 rno-miR-874 29192 Psen1 agccagGGAGCCCGGUCCCGUc ||| ||| ||||||| agcaaaCCU-GGG-CAGGGCAu 2 17 61 80 [rn4:6:107776418-107776437:+] 0.5646 152 7 -23.53 -0.1603 MIMAT0005307 rno-miR-375 29192 Psen1 aguGCGCUCGGCUUGCUUGUUu :|:| |: |:||||||| uccUGUGUCCUCAGCGAACAAa 2 20 90 111 [rn4:6:107776447-107776468:+] 0.5646 155 7 -19.76 -0.3614

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G043820 Psen1 Rattus norvegicus 29192

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Psen1 RAID00040932 rno-miR-542-3p miRNA MIMAT0003179 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID00221611 rno-miR-874-3p miRNA MIMAT0005284 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID00292333 rno-miR-93-5p miRNA MIMAT0000817 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID00341386 rno-miR-7a-5p miRNA MIMAT0000606 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID00393495 rno-miR-7b miRNA MIMAT0000780 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID00414391 rno-miR-132-3p miRNA MIMAT0000838 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID00507206 rno-miR-224-5p miRNA MIMAT0003119 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID00729113 rno-miR-291a-3p miRNA MIMAT0000895 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID00927516 rno-miR-375-3p miRNA MIMAT0005307 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID01188941 rno-miR-20a-5p miRNA MIMAT0000602 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID01321847 rno-miR-129-5p miRNA MIMAT0000600 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID01368389 rno-miR-539-5p miRNA MIMAT0003176 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID01698789 rno-miR-22-3p miRNA MIMAT0000791 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID01812417 rno-miR-148b-3p miRNA MIMAT0000579 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID01861511 rno-miR-186-5p miRNA MIMAT0000863 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID02120383 rno-miR-338-3p miRNA MIMAT0000581 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID02129642 rno-miR-363-3p miRNA MIMAT0003210 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID02214985 rno-miR-193a-3p miRNA MIMAT0000868 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID02335870 rno-miR-212-3p miRNA MIMAT0000883 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID02529146 rno-miR-20b-5p miRNA MIMAT0003211 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID02793262 rno-miR-122-5p miRNA MIMAT0000827 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID02940850 rno-miR-31a-5p miRNA MIMAT0000810 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID03001508 rno-miR-214-3p miRNA MIMAT0000885 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID03027202 rno-miR-451-5p miRNA MIMAT0001633 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID03135450 rno-miR-152-3p miRNA MIMAT0000854 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID03179435 rno-miR-17-5p miRNA MIMAT0000786 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID03477225 rno-miR-106b-5p miRNA MIMAT0000825 Psen1 mRNA 29192 Prediction 0.1828 Psen1 RAID03566386 rno-miR-140-5p miRNA MIMAT0000573 Psen1 mRNA 29192 Prediction 0.1828