DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G045972 Prkci Rattus norvegicus 84006

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Prkci; Pkcl rno-miR-106b 43 63 UAGAC-GUGACAGUCGUGAAAU- | ||| ||:||||:|||| ---GGUCACAGUUAGCAUUUUAU Prkci; Pkcl rno-miR-122a 261 280 UGUUUGUGGUAACAGUGUGAGGU :| |:|||| |||||| ---UGCUGCGUUGUGACACUCA- Prkci; Pkcl rno-miR-128b 205 227 -CUUUCUCUGGCCAAGUGACACU ||||| ||| || |||| AGAAAG-GACAGUGUCUUUGUGU Prkci; Pkcl rno-miR-134 24 51 GGGAGACC-AGUUGG--------UCAGUGU- ||| |||||| :|||||| ----AUGGAUCAACCGUUAGCCCGGUCACAG Prkci; Pkcl rno-miR-135a 325 362 AGUGUAUC--------------CUUAUUUUUCGGUAU- :|||:| ||:|::|::|||||: -GGCAUGGAAGGCUUAAUUGUAGAGUGGAGGGCCAUGC Prkci; Pkcl rno-miR-135b 325 362 GUGUAUC--------------CUUACUUUUCGGUAU- :|||:| ||:||:|::|||||: GGCAUGGAAGGCUUAAUUGUAGAGUGGAGGGCCAUGC Prkci; Pkcl rno-miR-139 323 349 -UCUGUGCA---CG---UGACAUCU- ||:||:| || |:|||||| AAGGCAUGGAAGGCUUAAUUGUAGAG Prkci; Pkcl rno-miR-16 245 268 GCGGUUAUAAAUGC--ACGACGAU |:||| :| |||||| UGUCAAAGAAAGCCUCUGCUGCG- Prkci; Pkcl rno-miR-185 178 193 CUUGACGGAAAGAGAGGU- |||: ||||||| ---AUGCUUG-CUCUCCAG Prkci; Pkcl rno-miR-192 306 325 CCGACAGUUAAGUAUCCAGUC |:||||| ||: :|||:| AGUUGUCACUUU--GGGUUAA Prkci; Pkcl rno-miR-196b 210 243 GGUUGUUG------------UCCUUUGAUGGAU- :|||: ||||||| :|||| -GGACAGUGUCUUUGUGUAAAGGAAACAGCCUAG Prkci; Pkcl rno-miR-200a 264 289 -UGUAGCAA--UG-GUCUGUC-ACAAU :|:|:|| || ||| :| || UGCGUUGUGACACUCAGUGGGAUGA-- Prkci; Pkcl rno-miR-205 332 357 GUCUGAGGC--CACCUUACUUCCU- ||:||: || ||:||:|||: AAGGCUUAAUUGUAGAGUGGAGGGC Prkci; Pkcl rno-miR-20a 38 63 GAUGGA-C-GUGAUAUUCGUGAAAU- :|| | ||| :| ||||:|||| -AGCCCGGUCACAGUUAGCAUUUUAU Prkci; Pkcl rno-miR-214 241 267 GACGGACAGACA----CGGA--CGACA ||:|||| |||| |||| -AGCUUGUCAAAGAAAGCCUCUGCUGC Prkci; Pkcl rno-miR-219 263 281 UCUUAACGCAAACCUGUUAGU- |||||| |||| ||| ----CUGCGUUGUGACACUCAG Prkci; Pkcl rno-miR-23a 251 275 CCUUUAGG-GAC--CGUUACACUA |||| || ||| ||: ||||| AGAAAGCCUCUGCUGCGUUGUGAC Prkci; Pkcl rno-miR-28 83 106 -GAGUUAUCUGACACUCGAGGAA ||||||| |||| ||| || UCUCAAUAUCCUGUUAGCGACUA Prkci; Pkcl rno-miR-290 391 410 UUUUUCACGGGGGUAUCAAACUC :||| |||:| ||||||| --UGAGUUCCCUC--AGUUUGAA Prkci; Pkcl rno-miR-292-5p 391 410 GUUUUCUCGGGGGUCAAACUCA :|| |||:|||||||| --UGAGUUCCCUCAGUUUGAA- Prkci; Pkcl rno-miR-296 325 359 -UGU-CCU--------AAC-UC-C-CC-CCCGGGA :|| ||| ||| || | || ||||| GGCAUGGAAGGCUUAAUUGUAGAGUGGAGGGCCA- Prkci; Pkcl rno-miR-298 229 266 -CCUUCUUGUCGG---GA------------GGAGACGG- ||| ||||||| || |||||||: AGGA--AACAGCCUAGCUUGUCAAAGAAAGCCUCUGCUG Prkci; Pkcl rno-miR-29c* 271 301 CUUGUG-GUC-CUCUU------UAGCCAGU :|||| ||| |:|| ||| ||| UGACACUCAGUGGGAUGACAUCAUCAGUCU Prkci; Pkcl rno-miR-324-3p 304 333 GGUCGUC-GUGGACCCCG--UC---ACC- |||: | |||:| |||: || ||| ACAGUUGUCACUUUGGGUUAAGGCAUGGA Prkci; Pkcl rno-miR-324-5p 261 291 -UGUGGU--UACG--GGAUC-CCCUAC-GC :| |: :|| |: || |||||| | UGCUGCGUUGUGACACUCAGUGGGAUGACA Prkci; Pkcl rno-miR-328 327 360 -UGCCUUCC-------CGUCU---CUCCCGGUC |:|||||| |:||| |||||||| CAUGGAAGGCUUAAUUGUAGAGUGGAGGGCCAU Prkci; Pkcl rno-miR-337 106 133 UUUCCGUAGUAUAUC-------CUCGACUU ||| ||||||||| ||||| -UAGGAAUCAUAUAGCUAAGCAGAGCUA-- Prkci; Pkcl rno-miR-339 191 234 ACU-CGAGGACC------UCCUGUC--------------CCU || |||||| ||||||| ||| AGAGGCUCCUAAUGAGAAAGGACAGUGUCUUUGUGUAAAGGAA Prkci; Pkcl rno-miR-341 26 48 UGACUGGCUGGCU----GGCUAGCU ||:| |||| |||:|| --GGAUCAACCGUUAGCCCGGUCA- Prkci; Pkcl rno-miR-343 314 356 -AGACCCG----UGUGCCU---------------C-CCUCU |:||||: :||:||| | ||||: CUUUGGGUUAAGGCAUGGAAGGCUUAAUUGUAGAGUGGAGGG Prkci; Pkcl rno-miR-347 269 288 ACCCGCUG-G-GUCUCCCUGU |:||| | ||| ||||: --UGUGACACUCAGUGGGAUG Prkci; Pkcl rno-miR-349 317 339 UCUCCAAUUCUGU-CGUCCCGAC :|||||||:|| | | |||| -UGGGUUAAGGCAUGGAAGGCUU Prkci; Pkcl rno-miR-34a 232 266 -UUGUUGG-UCGA-----UUCUGU----GACGGU ||||:|| |||| |||| ||||: AAACAGCCUAGCUUGUCAAAGAAAGCCUCUGCUG Prkci; Pkcl rno-miR-370 142 183 -UUGGUCCAAGG---------------UGGGGUCGUC-CG |||:|| |||| ||:||||: || AAACUAGUUUCCUGACAGUCAUGUCAAACUCCAGUUAUGCU Prkci; Pkcl rno-miR-422b 147 178 -CGGAAGACUGA------GGUUC-AGGUCA- |::| ||||| :||| |||||| AGUUUCCUGACAGUCAUGUCAAACUCCAGUU Prkci; Pkcl rno-miR-485 243 263 CUUAAGUAGUGCCGGUCGGAGA- |::||| | ||||||| ---CUUGUCAAAGAAAGCCUCUG Prkci; Pkcl rno-miR-497 165 188 AUGUUUGGUGUCAC-ACGA-CGAC |||||: |||| |||| ||| -UCAAACUCCAGUUAUGCUUGCUC Prkci; Pkcl rno-miR-7 283 306 -UUGUUUUAGUGAUCAGAAGGU- :|::| ||||: ||||| ||| GGAUGACAUCAUCAGUCUCCCAC Prkci; Pkcl rno-miR-7b 283 306 -UUGUUUUAGUGUUCAGAAGGU- :|::| ||||: ||||| ||| GGAUGACAUCAUCAGUCUCCCAC Prkci; Pkcl rno-miR-106b 40 61 uaGAC-GUGACAGUCGUGAAAU | | ||| ||:||||:|||| ccCGGTCACAGTTAGCATTTTA Prkci; Pkcl rno-miR-122a 258 280 uguuugugGUAACAGUGUGAGgu |:|||| |||||| ctctgctgCGTTGTGACACTCag Prkci; Pkcl rno-miR-128b 206 226 CUUUCUCUGGCCAAGUGACACu ||||| ||| | || :|||| GAAAG-GACAGTGTCTTTGTGt Prkci; Pkcl rno-miR-134 28 49 gggagacCAGUU-GGUCAGUGU ||:|: ||:|||||| atcaaccGTTAGCCCGGTCACA Prkci; Pkcl rno-miR-135a 336 360 agugUAUC--CUUAUUUUUCGGUAu || | ||:|::|::||||| cttaATTGTAGAGTGGAGGGCCATg Prkci; Pkcl rno-miR-135b 337 360 gugUAUC--CUUACUUUUCGGUAu || | ||:||:|::||||| ttaATTGTAGAGTGGAGGGCCATg Prkci; Pkcl rno-miR-139 324 347 UCUGUGC---ACG---UGACAUCU ||:||:| || |:|||||| AGGCATGGAAGGCTTAATTGTAGA Prkci; Pkcl rno-miR-16 245 268 gCGGUUAUAAAUG--CACGACGau |:||| : :| |||||| tGTCAAAGAAAGCCTCTGCTGCgt Prkci; Pkcl rno-miR-185 175 191 cuugACGGAAAGAGAGGU || ||| ||||||| gttaTG-CTTGCTCTCCA Prkci; Pkcl rno-miR-193 328 361 gACC--CUGA---AACAU--------CCGGUcaa ||| |:|| ||||| ||||| aTGGAAGGCTTAATTGTAGAGTGGAGGGCCAtgc Prkci; Pkcl rno-miR-196b 221 241 gguuguUGUCCUUUGAUGGAU | ||||||| :|||| ttgtgtAAAGGAAACAGCCTA Prkci; Pkcl rno-miR-200a 265 285 uGUAGCAAUGGUCUGUCACaau |:|:|| | || ||||| gCGTTGTGA-CACTCAGTGgga Prkci; Pkcl rno-miR-214 239 266 GA-CGGACAG------ACACGGACGACa || ||:|||| | :|||||| CTAGCTTGTCAAAGAAAGCCTCTGCTGc Prkci; Pkcl rno-miR-219 259 279 ucuuaACGCAAACCUGUUAGU |||||| |||| ||| tctgcTGCGTTGTGACACTCA Prkci; Pkcl rno-miR-28 84 105 GAGUUAUCUGACACUCGAGGAa ||||||| |||| ||| || CTCAATATCCTGTTAGCGACTa Prkci; Pkcl rno-miR-290 389 409 uuuuUCACGGGGGUAUCAAACUc ||| |||:| ||||||| tctgAGTTCCCTC--AGTTTGAa Prkci; Pkcl rno-miR-292-5p 387 410 guuuuCUC--GGGGGUCAAACUca ||| |||:|||||||| tttctGAGTTCCCTCAGTTTGAat Prkci; Pkcl rno-miR-296 331 359 ugUCC----UAA---CUCCCC-CCCGGga ||| ||| ||| || ||||| gaAGGCTTAATTGTAGAGTGGAGGGCCat Prkci; Pkcl rno-miR-298 230 264 CCUUCUUGUCGG---GA------------GGAGACGg ||| ||||||| || ||||||| GGA--AACAGCCTAGCTTGTCAAAGAAAGCCTCTGCt Prkci; Pkcl rno-miR-324-5p 264 289 ugugguuAC-GGGA-UC-CCCUACgc || | || || |||||| tgcgttgTGACACTCAGTGGGATGac Prkci; Pkcl rno-miR-328 328 359 UGCCUUCC-------CGUCU---CUCCCGGUc |:|||||| |:||| |||||||| ATGGAAGGCTTAATTGTAGAGTGGAGGGCCAt Prkci; Pkcl rno-miR-337 105 134 UUUCCGUAGUAUAUC-------CUCGACUU | ||| ||||||||| ||||| || ATAGGAATCATATAGCTAAGCAGAGCTAAA Prkci; Pkcl rno-miR-341 24 48 UGACUGGCUGGC--U--GGCUAGcu |: ||:| |||| | |||:|| ATGGATCAACCGTTAGCCCGGTCac Prkci; Pkcl rno-miR-343 330 354 agacCCGUGU--GC--CUC-CCUCu ||| :| :| ||| |||| ggaaGGCTTAATTGTAGAGTGGAGg Prkci; Pkcl rno-miR-349 316 338 ucuCCAAUUCUGU-CGUCCCGAc |||||||:|| | | |||| ttgGGTTAAGGCATGGAAGGCTt Prkci; Pkcl rno-miR-34a 233 265 UUGUUGG-UCGA-----UUCU----GUGACGgu ||||:|| |||| |||| | |||| AACAGCCTAGCTTGTCAAAGAAAGCCTCTGCtg Prkci; Pkcl rno-miR-370 170 196 uuGGUC----C-AAGGUGGGGUCGUCCG |||| | || | |:|||| |||| ctCCAGTTATGCTTGCTCTCCAG-AGGC Prkci; Pkcl rno-miR-377 205 229 ggUUUUC---AACGGAAACACACUa |||:| ||:|||||||| | agAAAGGACAGTGTCTTTGTGTAAa Prkci; Pkcl rno-miR-422b 148 176 CGGAAGACUG-------AGGUUCAGGUCA |::| ||||| || || |||||| GTTTCCTGACAGTCATGTCAAACTCCAGT Prkci; Pkcl rno-miR-485 240 261 cUUAAGUAGUGCCGGUCGGAGA |: |::||| | ||||||| tAGCTTGTCAAAGAAAGCCTCT Prkci; Pkcl rno-miR-497 164 187 auGUUUGGUGUC-ACACG-ACGAc |||||: ||| | ||| |||| gtCAAACTCCAGTTATGCTTGCTc Prkci; Pkcl rno-miR-7 284 304 uUGUUUUAGUGAUCAGAAGGU |::| ||||: ||||| ||| gATGACATCATCAGTCTCCCA Prkci; Pkcl rno-miR-7b 284 304 uUGUUUUAGUGUUCAGAAGGU |::| ||||: ||||| ||| gATGACATCATCAGTCTCCCA Prkci; Pkcl rno-miR-290 402 409 UUU----------------------UUCACGGGGGUAUCAAACUC :||| |||:| ||||||| AUAUCUGCUAGUGUUACUGGUUUCUGAGUUCCCUC--AGUUUGAA Prkci; Pkcl rno-miR-298 257 264 --------CCUUCUUGUCGGGA---------------GGAGACGG |||| ||||||: |||||||: UGUGUAAAGGAA--ACAGCCUAGCUUGUCAAAGAAAGCCUCUGCUG Prkci; Pkcl rno-miR-328 352 359 -----------UGCCUUCC-------CGUC---UCUCCCGGUC |:|||||| |:|| :|||||||| UGGGUUAAGGCAUGGAAGGCUUAAUUGUAGAGUGGAGGGCCAU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Prkci RAID00108830 rno-miR-125b-2-3p miRNA MIMAT0026467 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID00129279 rno-miR-33-3p miRNA MIMAT0017104 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID00344006 rno-miR-568 miRNA MIMAT0012832 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID00428781 rno-miR-881-3p miRNA MIMAT0005289 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID00709253 rno-miR-653-5p miRNA MIMAT0012838 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID00759396 rno-miR-145-3p miRNA MIMAT0017131 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01079053 rno-miR-6327 miRNA MIMAT0025066 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01371974 rno-let-7b-3p miRNA MIMAT0004705 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01389993 rno-miR-107-5p miRNA MIMAT0017115 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01433145 rno-miR-98-3p miRNA MIMAT0017111 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01452086 rno-let-7c-2-3p miRNA MIMAT0017088 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01557831 rno-miR-196c-3p miRNA MIMAT0017299 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01579218 rno-miR-186-3p miRNA MIMAT0017143 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01646844 rno-miR-3596d miRNA MIMAT0017823 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01754248 rno-miR-3588 miRNA MIMAT0017887 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01801623 rno-miR-21-3p miRNA MIMAT0004711 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID01921662 rno-miR-3558-5p miRNA MIMAT0017825 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID02207347 rno-miR-7a-2-3p miRNA MIMAT0017091 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID02285803 rno-miR-878 miRNA MIMAT0005286 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID02466337 rno-miR-935 miRNA MIMAT0012845 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID02527663 rno-miR-103-1-5p miRNA MIMAT0017114 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID02585656 rno-miR-300-3p miRNA MIMAT0000902 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID02651861 rno-miR-322-3p miRNA MIMAT0000547 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID02699970 rno-let-7f-1-3p miRNA MIMAT0017089 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID02858130 rno-miR-22-3p miRNA MIMAT0000791 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID02981029 rno-miR-186-5p miRNA MIMAT0000863 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID03133135 rno-let-7a-1-3p miRNA MIMAT0017085 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID03474995 rno-miR-880-5p miRNA MIMAT0017292 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID03812349 rno-miR-190b-3p miRNA MIMAT0017298 Prkci mRNA 84006 Prediction 0.1828 Prkci RAID03887059 rno-miR-103-2-5p miRNA MIMAT0017113 Prkci mRNA 84006 Prediction 0.1828