DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000554 rno-miR-324-3p 314432 Uba1 ggucgucgUGGACCCCGUCACc :||| ||||||| uccauuugGCCUCAGGCAGUGg 2 15 62 83 [rn4:X:12926162-12926183:-] 0.6703 150 7 -25.84 -0.3670 MIMAT0004639 rno-miR-325-3p 314432 Uba1 aacuauccuccacgaGUUAUUu |||||| uuggaaccuaaauccCAAUAAa 2 8 159 180 [rn4:X:12926065-12926086:-] 0.6703 120 6 -4.90 -0.4445 MIMAT0000561 rno-miR-327 314432 Uba1 uggGAGUACG-GGGAGUUCc | || || ||||||| ucaCCCA-GCAACCUCAAGa 2 17 113 131 [rn4:X:12926114-12926132:-] 0.6703 141 7 -17.71 -1.2007 MIMAT0000568 rno-miR-330* 314432 Uba1 agagacguccgGGACACGAAACg || ||||||| agauccucucaCCACUGCUUUGu 2 13 129 151 [rn4:X:12926094-12926116:-] 0.6703 144 7 -16.55 -0.7559 MIMAT0004712 rno-miR-23a* 314432 Uba1 uuUAGGGUAGGGGUCCUUGGGg :| || |: :: ||||||: uuGUACC-UUGUUUGGAACCUa 2 21 148 168 [rn4:X:12926077-12926097:-] 0.6703 130 0 -15.06 -0.3556 MIMAT0004715 rno-miR-27a* 314432 Uba1 acGA-GUGUU--CGUCGAUUCGGGa || ||::| | |||||||| -uCUCCAUGAAUUCCCCUAAGCCCu 2 21 1 24 [rn4:X:12926221-12926244:-] 0.4977 146 7 -19.06 -0.2661 MIMAT0004719 rno-miR-30c-1* 314432 Uba1 ccucAUUUGUUGGGAGAG-GGUc | || :|:|||||| ||| aaccUCAA-GAUCCUCUCACCAc 2 19 122 143 [rn4:X:12926102-12926123:-] 0.6703 124 0 -17.69 -0.9652 MIMAT0004721 rno-miR-30b-3p 314432 Uba1 cugcAUUUGUAGGUGUAGGGUc |::| | |:| |||||| uguuUGGA-ACCUAAAUCCCAa 2 19 156 176 [rn4:X:12926069-12926089:-] 0.6703 124 6 -13.33 -0.2261 MIMAT0004730 rno-miR-125b-3p 314432 Uba1 ucgagggUUCUCGGAUUGGGca || || |||||| aauaaaaAAAAG-AUAACCCag 3 16 175 195 [rn4:X:12926050-12926070:-] 0.6427 125 0 -12.88 -0.3973 MIMAT0003177 rno-miR-541 314432 Uba1 ucacACUGGUUGUAGUCUUAGGGaa || :::: | | |||||| accuUGUUUGGAACCUAAAUCCCaa 3 22 152 176 [rn4:X:12926069-12926093:-] 0.6703 129 0 -9.48 -0.2096 MIMAT0005327 rno-miR-672 314432 Uba1 agugugugucauGUGGUUGGAGu || ||||||| ucccuuaucaccCAGCAACCUCa 2 12 106 128 [rn4:X:12926117-12926139:-] 0.6703 147 7 -19.66 -0.9419 MIMAT0012843 rno-miR-876 314432 Uba1 accacuaagugucucUUUAGGu |||||| ccuuguuuggaaccuAAAUCCc 2 8 153 174 [rn4:X:12926071-12926092:-] 0.6703 120 6 -5.17 -0.1467 MIMAT0000844 rno-miR-138 314432 Uba1 gcCGGACU--AAGUG--UUGU-GGUCGa |||||: ||| | | || ||||| aaGCCUGGACUUCCCUUAUCACCCAGCa 2 22 95 122 [rn4:X:12926123-12926150:-] 0.6703 123 0 -19.79 -1.0042 MIMAT0000856 rno-miR-154 314432 Uba1 gcUUCCGUUGUGCCUAUUGGau || || | ||||||| ccAAUAAAAAAAAGAUAACCca 3 21 173 194 [rn4:X:12926051-12926072:-] 0.6703 132 0 -10.22 -0.3022

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G059147 Uba1 Rattus norvegicus 314432

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Uba1 RAID01283256 rno-miR-377-5p miRNA MIMAT0017203 Uba1 mRNA 314432 Prediction 0.1828 Uba1 RAID01542062 rno-miR-138-5p miRNA MIMAT0000844 Uba1 mRNA 314432 Prediction 0.1828 Uba1 RAID02615536 rno-miR-450a-3p miRNA MIMAT0017183 Uba1 mRNA 314432 Prediction 0.1828 Uba1 RAID02657593 rno-miR-324-3p miRNA MIMAT0000554 Uba1 mRNA 314432 Prediction 0.1828 Uba1 RAID03692445 rno-miR-154-5p miRNA MIMAT0000856 Uba1 mRNA 314432 Prediction 0.1828