DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004639 rno-miR-325-3p 25490 Nedd8 aacuauccuCCACGAGUUAUUu ||| ||||||| uauauccuuGGUUGUCAAUAAa 2 14 232 253 [rn4:15:33797469-33797490:-] 0.7030 149 7 -10.10 -1.0865 MIMAT0005290 rno-miR-883 25490 Nedd8 uaUGACUCUCUA-C-AACGUCAau |:||:| | | ||||||| ccAUUGGGUUUUAGUUUGCAGUcc 3 21 185 208 [rn4:15:33797514-33797537:-] 0.7030 130 0 -13.56 -0.1017 MIMAT0005323 rno-miR-532-3p 25490 Nedd8 acguuCGGAACCCACACCCUCc |:|| | ||||||| uguguGUCUACUG-GUGGGAGa 2 18 114 134 [rn4:15:33797588-33797608:-] 0.7030 143 7 -18.83 -0.9116 MIMAT0012835 rno-miR-615 25490 Nedd8 cuaggCUCGUG-GCCCCUGGGGg ||| |: :| ||||||| gguggGAGAAUGUGAGGACCCCa 2 18 126 148 [rn4:15:33797574-33797596:-] 0.7030 152 7 -24.46 -1.0645 MIMAT0012840 rno-miR-802 25490 Nedd8 uuCCUAC---UUAGAA---ACA-AUGACu ||||| |||||| ||| ||||| uuGGAUGCCCAAUCUUGUGUGUCUACUGg 2 21 99 127 [rn4:15:33797595-33797623:-] 0.7030 130 0 -18.72 -0.5266 MIMAT0012844 rno-miR-665 25490 Nedd8 ucccuggagucGGAGGACCa ::|||||| ucaauaaaauaUUUCCUGGc 2 10 246 265 [rn4:15:33797457-33797476:-] 0.7030 125 6 -13.20 -0.7835 MIMAT0000792 rno-miR-23a 25490 Nedd8 ccuuuagggaccgUUACACUa ||||||| cuacuggugggagAAUGUGAg 2 9 121 141 [rn4:15:33797581-33797601:-] 0.7030 140 7 -13.45 -0.2891 MIMAT0000793 rno-miR-23b 25490 Nedd8 ccAUUAGGGACC-GUUACACUa || | : || ||||||| ucUACUGGUGGGAGAAUGUGAg 2 20 120 141 [rn4:15:33797581-33797602:-] 0.7030 142 7 -13.65 -0.2891 MIMAT0000846 rno-miR-141 25490 Nedd8 gguagaaauGGUC---UGUCACAAu |||| :||||||| gugaggaccCCAGGAUGCAGUGUUc 2 14 137 161 [rn4:15:33797561-33797585:-] 0.7030 144 7 -15.26 -0.2523 MIMAT0000865 rno-miR-190 25490 Nedd8 uggAUUAUAUAGU-UUGUAUAGu ||||:|: || ||||||| ucaUAAUGUGGCAUCACAUAUCc 2 20 38 60 [rn4:15:33797662-33797684:-] 0.7030 162 7 -13.49 -0.2940 MIMAT0000874 rno-miR-200a 25490 Nedd8 uguagcaauGGUC---UGUCACAAu |||| :||||||| gugaggaccCCAGGAUGCAGUGUUc 2 14 137 161 [rn4:15:33797561-33797585:-] 0.7030 144 7 -15.23 -0.2523 MIMAT0000887 rno-miR-217 25490 Nedd8 uagguCAGUCAAGG---ACUACGUCAu || || || |||||||| agaauGUGAGGACCCCAGGAUGCAGUg 2 20 132 158 [rn4:15:33797564-33797590:-] 0.7030 146 7 -20.29 -0.2587 MIMAT0005302 rno-miR-190b 25490 Nedd8 uuGGAUUAUA--GU-UUGUAUAGu | ||||:| || ||||||| cuCAUAAUGUGGCAUCACAUAUCc 2 20 37 60 [rn4:15:33797662-33797685:-] 0.7030 153 7 -11.28 -0.2966 MIMAT0005312 rno-miR-411 25490 Nedd8 gcaUGCGAUAUGCCAGAUGAu |: :|:|:: ||||||| ccaAUCUUGUGU-GUCUACUg 2 19 107 126 [rn4:15:33797596-33797615:-] 0.7030 148 7 -15.22 -0.5419 MIMAT0005339 rno-miR-873 25490 Nedd8 uccUCUGAGUGUUCAAGGACg :||: || : ||||||| ccaGGAUGCA-GUGUUCCUGg 2 19 146 165 [rn4:15:33797557-33797576:-] 0.7030 148 7 -16.34 -0.3680 MIMAT0005339 rno-miR-873 25490 Nedd8 uccucugaguguucAAGGACg |||||| ugucaauaaaauauUUCCUGg 2 8 244 264 [rn4:15:33797458-33797478:-] 0.7030 120 6 -7.71 -0.4639

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G100385 Nedd8 Rattus norvegicus 25490

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nedd8 RAID00257050 rno-miR-129-5p miRNA MIMAT0000600 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID00636465 rno-miR-23a-3p miRNA MIMAT0000792 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID01000700 rno-miR-23b-3p miRNA MIMAT0000793 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID01072623 rno-miR-328a-5p miRNA MIMAT0017029 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID02063064 rno-miR-190a-5p miRNA MIMAT0000865 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID02126027 rno-miR-200a-3p miRNA MIMAT0000874 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID03037976 rno-miR-326-5p miRNA MIMAT0017028 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID03067211 rno-miR-873-5p miRNA MIMAT0005339 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID03313296 rno-miR-411-5p miRNA MIMAT0005312 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID03526222 rno-miR-217-5p miRNA MIMAT0000887 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID03591948 rno-miR-325-3p miRNA MIMAT0004639 Nedd8 mRNA 25490 Prediction 0.2202 Nedd8 RAID03626951 rno-miR-532-3p miRNA MIMAT0005323 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID03745218 rno-miR-190b-5p miRNA MIMAT0005302 Nedd8 mRNA 25490 Prediction 0.1828 Nedd8 RAID03919732 rno-miR-141-3p miRNA MIMAT0000846 Nedd8 mRNA 25490 Prediction 0.1828