DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000563 rno-let-7d* 303554 Nbr1 ucuuuccgucguccAGCAUAuc |||||| -----ggacuggccUCGUAUua 3 9 1 17 [rn4:10:90600606-90600622:+] 0.6555 120 0 -9.62 -0.1027 MIMAT0004645 rno-miR-148b-5p 303554 Nbr1 ggacucacauauuGUCUUGAAg |||||||| agcaaucaaaggcCAGAACUUa 2 10 161 182 [rn4:10:90600766-90600787:+] 0.5916 145 7 -10.03 -0.7057 MIMAT0000614 rno-miR-151* 303554 Nbr1 ggaguuccUCGGAGUCAGAUc | :: ||||||| auauguuuAUUUACAGUCUAa 2 14 1138 1158 [rn4:10:90601743-90601763:+] 0.5604 141 7 -11.25 -1.2402 MIMAT0004711 rno-miR-21* 303554 Nbr1 cugucggguagcugaCGACAAc |||||| ggauguuuuuaauggGCUGUUa 2 8 345 366 [rn4:10:90600950-90600971:+] 0.5604 120 6 -10.81 -0.1285 MIMAT0004717 rno-miR-29b-2* 303554 Nbr1 gauucggugguacacUUUGGUc |||||| ugaaugcuucuaaauAAACCAc 2 8 1163 1184 [rn4:10:90601768-90601789:+] 0.5604 120 6 -7.55 -0.1777 MIMAT0005446 rno-miR-219-2-3p 303554 Nbr1 ugucuacaggUCGGUGUUAAGa | ||||||||| cuucuaaauaAACCACAAUUCa 2 13 1169 1190 [rn4:10:90601774-90601795:+] 0.5604 152 7 -13.45 -0.8746 MIMAT0000901 rno-miR-299 303554 Nbr1 uacauacacccugccAUUUGGu |||||| uugaaugcuucuaaaUAAACCa 2 8 1162 1183 [rn4:10:90601767-90601788:+] 0.5604 120 6 -8.32 -0.1275 MIMAT0003162 rno-miR-1* 303554 Nbr1 cccauguauuuCUUCAUACACg | |||||||| cucucucugcuGUAGUAUGUGg 2 12 244 265 [rn4:10:90600849-90600870:+] 0.5916 147 7 -10.55 -0.3923 MIMAT0003175 rno-miR-543* 303554 Nbr1 ucUUC-ACGUGGCGCUUACAAa ||| | ||| :||||||| uaAAGAUUAACCUUGAAUGUUu 2 20 393 414 [rn4:10:90600998-90601019:+] 0.5604 158 7 -16.17 -0.9660 MIMAT0004791 rno-miR-379* 303554 Nbr1 caaucaCCUGGUACAAUGU-AUc | ||| ||||||| || aaagccGUACC-UGUUACAGUAu 2 17 132 153 [rn4:10:90600737-90600758:+] 0.5916 122 0 -11.42 -0.6712 MIMAT0003207 rno-miR-369-3p 303554 Nbr1 uuUCUAGUUGGUACAUAAUAa ||:| || :| ||||||| auAGGUGAAAUA-GUAUUAUu 2 20 1072 1091 [rn4:10:90601677-90601696:+] 0.5604 157 7 -11.00 -1.1339 MIMAT0005278 rno-miR-466b 303554 Nbr1 guaccuguaugugUGUGUGUAu |||||||| ugcgaaggaggggACACACAUg 2 10 789 810 [rn4:10:90601394-90601415:+] 0.5604 145 7 -16.24 -0.1534 MIMAT0005282 rno-miR-872 303554 Nbr1 ggACUUGAUUGUUCAUUG-GAa | |:: ||:||||||| || acUUAGUAAAUAAGUAACACUu 2 20 501 522 [rn4:10:90601106-90601127:+] 0.5604 131 0 -15.02 -0.5993 MIMAT0012844 rno-miR-665 303554 Nbr1 uccCUGGAGUCGGAGGACCa ||::|:| ||||||| aaaGAUUUUA--CUCCUGGu 2 18 1009 1026 [rn4:10:90601614-90601631:+] 0.5604 150 7 -20.01 -0.9695 MIMAT0012849 rno-miR-295 303554 Nbr1 cuucacacggggugUAAACUCa ||||||| uacuccugguaagaAUUUGAGa 2 9 1017 1038 [rn4:10:90601622-90601643:+] 0.5604 140 7 -11.87 -0.7587 MIMAT0012850 rno-miR-465 303554 Nbr1 guGUGGUCGUGGCAAGAUUUAu | |: | |: |||||||| aaCUCUUGAAUGCUUCUAAAUa 2 21 1157 1178 [rn4:10:90601762-90601783:+] 0.5604 152 7 -11.99 -0.9073 MIMAT0012852 rno-miR-667 303554 Nbr1 gaacccgacccaccgUCCACAGu ||||||| uguaauccccuucugAGGUGUCc 2 9 831 853 [rn4:10:90601436-90601458:+] 0.5604 140 7 -12.05 -0.1480 MIMAT0000566 rno-miR-329 303554 Nbr1 uuuUUCCAAUCGACCCACACAa |||| :| ||||||| gguAAGG-AGGACAGGUGUGUg 2 20 741 761 [rn4:10:90601346-90601366:+] 0.5604 145 7 -15.68 -0.6025 MIMAT0000573 rno-miR-140 303554 Nbr1 gaugguaucccauUUUGGUGac ||||||| aaugcuucuaaauAAACCACaa 3 10 1165 1186 [rn4:10:90601770-90601791:+] 0.5604 125 0 -10.39 -0.2126 MIMAT0000575 rno-miR-335 303554 Nbr1 uguaAAAAGCAAUAACGAGAACu ||| | | | |||||| uuuaUUUACAGUCUAACUCUUGa 2 20 1143 1165 [rn4:10:90601748-90601770:+] 0.5604 123 6 -11.05 -0.1407 MIMAT0000581 rno-miR-338 303554 Nbr1 agUUGUUUUAGUGACUACGACCu :| :::| ||| ||||||| agGAGGGGA-CACACAUGCUGGu 2 22 794 815 [rn4:10:90601399-90601420:+] 0.5604 151 7 -16.24 -0.1490 MIMAT0000581 rno-miR-338 303554 Nbr1 agUUGUUUUAGUGACUACGACCu || :| : || ||||||| ggAAGGAUGGCAGGCAUGCUGGu 2 22 550 572 [rn4:10:90601155-90601177:+] 0.5604 149 7 -15.62 -0.1445 MIMAT0004650 rno-miR-340-5p 303554 Nbr1 uuagucagaguaacgAAAUAUu |||||| uuaacuuaguugguaUUUAUAa 2 8 1091 1112 [rn4:10:90601696-90601717:+] 0.5604 120 6 -8.47 -0.1410 MIMAT0000602 rno-miR-20a 303554 Nbr1 gaUGGACGUGAUAUU----CGUGAAAu |::| :||||| ||||||| ucAUUUAGUUUAUAAAAGGGCACUUUg 2 22 952 978 [rn4:10:90601557-90601583:+] 0.5604 148 7 -12.21 -0.1625 MIMAT0000602 rno-miR-20a 303554 Nbr1 gauggacgugauauucGUGAAAu |||||| ccagaacuuaaauuuuCACUUUa 2 8 173 195 [rn4:10:90600778-90600800:+] 0.5916 120 6 -10.18 -0.1099 MIMAT0000786 rno-miR-17-5p 303554 Nbr1 gauggacgugacaUUCGUGAAAc ::||||||| uuaguuuauaaaaGGGCACUUUg 2 11 956 978 [rn4:10:90601561-90601583:+] 0.5604 142 7 -13.50 -0.1625 MIMAT0000786 rno-miR-17-5p 303554 Nbr1 gauggacgugacauucGUGAAAc |||||| ccagaacuuaaauuuuCACUUUa 2 8 173 195 [rn4:10:90600778-90600800:+] 0.5916 120 6 -6.98 -0.1099 MIMAT0000804 rno-miR-30c 303554 Nbr1 cgacucucacAUCCUACAAAUGu || |||||||: uaauuauucaUAAUAUGUUUAUu 2 14 1126 1148 [rn4:10:90601731-90601753:+] 0.5604 133 0 -5.61 -0.1003 MIMAT0000806 rno-miR-30b-5p 303554 Nbr1 ucgacucacAUCCUACAAAUGu || |||||||: aauuauucaUAAUAUGUUUAUu 2 14 1127 1148 [rn4:10:90601732-90601753:+] 0.5604 133 0 -5.61 -0.1003 MIMAT0000817 rno-miR-93 303554 Nbr1 gauggacgugcUUGUCGUGAAAc || :||||||| uuaguuuauaaAAGGGCACUUUg 2 13 956 978 [rn4:10:90601561-90601583:+] 0.5604 148 7 -14.59 -0.1610 MIMAT0000817 rno-miR-93 303554 Nbr1 gauggacgugcuugucGUGAAAc |||||| ccagaacuuaaauuuuCACUUUa 2 8 173 195 [rn4:10:90600778-90600800:+] 0.5916 120 6 -7.20 -0.1110 MIMAT0000825 rno-miR-106b 303554 Nbr1 uagacgugacagUCGUGAAAu :||||||| aguuuauaaaagGGCACUUUg 2 10 958 978 [rn4:10:90601563-90601583:+] 0.5604 141 7 -10.77 -0.1625 MIMAT0000825 rno-miR-106b 303554 Nbr1 uagacgugacagucGUGAAAu |||||| agaacuuaaauuuuCACUUUa 2 8 175 195 [rn4:10:90600780-90600800:+] 0.5916 120 6 -9.44 -0.1099 MIMAT0000842 rno-miR-136 303554 Nbr1 agguaguAGUUUUGUUUACCUCa |:| ||:|||||| | uugguauUUAUAAUAAAUGGCGa 2 17 1100 1122 [rn4:10:90601705-90601727:+] 0.5604 132 0 -10.73 -0.1952 MIMAT0000857 rno-miR-181c 303554 Nbr1 ugAGUGGCUG--UCCAACUUACAa |:| ||: | |||||||| uuUUAAAGAUUAACCUUGAAUGUu 2 21 390 413 [rn4:10:90600995-90601018:+] 0.5604 147 7 -12.28 -0.8031 MIMAT0000858 rno-miR-181a 303554 Nbr1 ugAGUGGCU-GUCGCAACUUACAa |:| || :| | |||||||| uuUUAAAGAUUAACCUUGAAUGUu 2 22 390 413 [rn4:10:90600995-90601018:+] 0.5604 156 7 -12.95 -0.8031 MIMAT0000859 rno-miR-181b 303554 Nbr1 ugGGUGGCU-GUCGUUACUUACAa ::| || :| | ||||||| uuUUAAAGAUUAACCUUGAAUGUu 2 22 390 413 [rn4:10:90600995-90601018:+] 0.5604 144 7 -12.51 -0.8031 MIMAT0000868 rno-miR-193 303554 Nbr1 ugACCCUG-AAACAUCCGGUCaa ||| :| | ||||||| uuUGGAGCAAUCAAAGGCCAGaa 3 21 156 178 [rn4:10:90600761-90600783:+] 0.5916 127 0 -16.74 -0.1358 MIMAT0000869 rno-miR-194 303554 Nbr1 agGUGUACCUCAACGACAAUGu || | | || ||||||| guCA-AAGCCGUACCUGUUACa 2 21 129 149 [rn4:10:90600734-90600754:+] 0.5916 146 7 -13.43 -0.8372 MIMAT0000873 rno-miR-200c 303554 Nbr1 ggUAGUAAUGGGC--CGUCAUAAu | | ||||:| ||||||| aaAGCCGUACCUGUUACAGUAUUu 2 21 132 155 [rn4:10:90600737-90600760:+] 0.5916 151 7 -18.71 -0.9410 MIMAT0000873 rno-miR-200c 303554 Nbr1 gguaguaaugggccGUCAUAAu :|||||| aaagauaggugaaaUAGUAUUa 2 9 1068 1089 [rn4:10:90601673-90601694:+] 0.5604 124 6 -8.60 -0.1300 MIMAT0000875 rno-miR-200b 303554 Nbr1 cagUAGUAAUGGUC--CGUCAUAAu | | |||| | ||||||| caaAGCCGUACCUGUUACAGUAUUu 2 21 131 155 [rn4:10:90600736-90600760:+] 0.5916 147 7 -12.84 -0.9410 MIMAT0000875 rno-miR-200b 303554 Nbr1 caguaguaaugguccGUCAUAAu :|||||| gaaagauaggugaaaUAGUAUUa 2 9 1067 1089 [rn4:10:90601672-90601694:+] 0.5604 124 6 -10.63 -0.1300 MIMAT0000877 rno-miR-204 303554 Nbr1 uccguauccuaCUGUUUCCCUu || ||||||| cccaccuguugGAGAAAGGGAa 2 12 685 706 [rn4:10:90601290-90601311:+] 0.5604 147 7 -14.77 -0.3148 MIMAT0000882 rno-miR-211 303554 Nbr1 uccguuuccuaCUGUUUCCCUu || ||||||| cccaccuguugGAGAAAGGGAa 2 12 685 706 [rn4:10:90601290-90601311:+] 0.5604 147 7 -14.77 -0.3148 MIMAT0000889 rno-miR-219-5p 303554 Nbr1 ucUUAACGCAAACCU-GUUAGu |:| : |||||| ||||| acAGUAUUUUUUGGAGCAAUCa 2 20 147 168 [rn4:10:90600752-90600773:+] 0.5916 127 0 -13.62 -0.8781 MIMAT0001538 rno-miR-429 303554 Nbr1 ugcCGUAAUGGUC--UGUCAUAAu || |||| | |||||||| aaaGCCGUACCUGUUACAGUAUUu 2 20 132 155 [rn4:10:90600737-90600760:+] 0.5916 158 7 -16.10 -0.9410 MIMAT0001538 rno-miR-429 303554 Nbr1 ugccguaauggUCUGUCAUAAu | |:|||||| aaagauaggugAAAUAGUAUUa 2 12 1068 1089 [rn4:10:90601673-90601694:+] 0.5604 131 6 -9.95 -0.1300 MIMAT0003179 rno-miR-542-3p 303554 Nbr1 aaAGUCAAUAGUUAGACAGUGu ||| | |: |||||||| caUCAUCUUUUUUUCUGUCACa 2 21 713 734 [rn4:10:90601318-90601339:+] 0.5604 156 7 -16.43 -0.8506 MIMAT0003193 rno-miR-494 303554 Nbr1 uccAAAGGGCA-CAUACAAAgu || ::| | ||||||| uaaUUAUUCAUAAUAUGUUUau 3 19 1126 1147 [rn4:10:90601731-90601752:+] 0.5604 129 0 -6.14 -0.1145 MIMAT0003194 rno-miR-376c 303554 Nbr1 ugcacuuuaaaggAGAUACAa ||||||| uuaaucugaugaaUCUAUGUc 2 9 93 113 [rn4:10:90600698-90600718:+] 0.5916 140 7 -8.24 -0.4704 MIMAT0003199 rno-miR-381 303554 Nbr1 cucucGAACGGGAACAUAu ||| : ||||||| uucucCUUCUGCUUGUAUu 2 15 297 315 [rn4:10:90600902-90600920:+] 0.5760 150 7 -10.04 -0.4806 MIMAT0003211 rno-miR-20b-5p 303554 Nbr1 uggacgugaUACUCGUGAAAc | |:||||||| aguuuauaaAAGGGCACUUUg 2 13 958 978 [rn4:10:90601563-90601583:+] 0.5604 148 7 -16.10 -0.1625 MIMAT0003211 rno-miR-20b-5p 303554 Nbr1 uggacgugauacucGUGAAAc |||||| agaacuuaaauuuuCACUUUa 2 8 175 195 [rn4:10:90600780-90600800:+] 0.5916 120 6 -7.38 -0.1099 MIMAT0005299 rno-miR-181d 303554 Nbr1 ugGGUGGCU-GUUGUUACUUACAa ::| || :||| ||||||| uuUUAAAGAUUAACCUUGAAUGUu 2 22 390 413 [rn4:10:90600995-90601018:+] 0.5604 152 7 -15.62 -0.7995 MIMAT0005312 rno-miR-411 303554 Nbr1 gcAUGC-GAU--AUGCCAGA-UGAu ||:| :|| ||| |||| ||| aaUAUGUUUAUUUACAGUCUAACUc 2 20 1137 1161 [rn4:10:90601742-90601766:+] 0.5604 121 0 -12.56 -0.9141 MIMAT0005335 rno-miR-758 303554 Nbr1 ccaauCACCUG-GUCCAGUGUUu | | || ||||||||| cagauGGGUACAGAGGUCACAAc 2 18 983 1005 [rn4:10:90601588-90601610:+] 0.5604 152 7 -19.08 -0.3290 MIMAT0005341 rno-miR-488 303554 Nbr1 cuggUUCUUUGUCGGAAAGUu |||||:| ||||||| ugggAAGAAGCUUCCUUUCAg 2 18 920 940 [rn4:10:90601525-90601545:+] 0.5604 165 7 -19.68 -0.6166

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G074657 Nbr1 Rattus norvegicus 303554

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nbr1 RAID00296740 rno-miR-136-5p miRNA MIMAT0000842 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID00382512 rno-miR-17-5p miRNA MIMAT0000786 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID00478992 rno-miR-381-3p miRNA MIMAT0003199 Nbr1 mRNA 303554 Prediction 0.2202 Nbr1 RAID00546871 rno-miR-429 miRNA MIMAT0001538 Nbr1 mRNA 303554 Prediction 0.2202 Nbr1 RAID00620357 rno-miR-200c-3p miRNA MIMAT0000873 Nbr1 mRNA 303554 Prediction 0.2202 Nbr1 RAID00709744 rno-miR-106b-5p miRNA MIMAT0000825 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID00732591 rno-miR-200b-3p miRNA MIMAT0000875 Nbr1 mRNA 303554 Prediction 0.2202 Nbr1 RAID00773980 rno-miR-140-5p miRNA MIMAT0000573 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID00811517 rno-miR-369-3p miRNA MIMAT0003207 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID00908249 rno-miR-101a-5p miRNA MIMAT0004726 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID00933000 rno-miR-340-5p miRNA MIMAT0004650 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID00987774 rno-miR-335 miRNA MIMAT0000575 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID01259205 rno-miR-376c-3p miRNA MIMAT0003194 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID01305964 rno-miR-329-3p miRNA MIMAT0000566 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID01315847 rno-miR-542-3p miRNA MIMAT0003179 Nbr1 mRNA 303554 Prediction 0.2202 Nbr1 RAID01330110 rno-miR-211-5p miRNA MIMAT0000882 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID01526225 rno-miR-30c-5p miRNA MIMAT0000804 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID01584867 rno-miR-93-5p miRNA MIMAT0000817 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID01599060 rno-miR-411-5p miRNA MIMAT0005312 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID01668838 rno-miR-30b-5p miRNA MIMAT0000806 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID01677077 rno-miR-219a-5p miRNA MIMAT0000889 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID01792961 rno-miR-181d-5p miRNA MIMAT0005299 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID01825190 rno-miR-488-3p miRNA MIMAT0005341 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID02253257 rno-miR-543-3p miRNA MIMAT0003175 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID02478235 rno-miR-151-3p miRNA MIMAT0000614 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID02485897 rno-miR-20a-5p miRNA MIMAT0000602 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID02594088 rno-miR-194-5p miRNA MIMAT0000869 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID02999733 rno-miR-539-3p miRNA MIMAT0017212 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID03025631 rno-miR-204-5p miRNA MIMAT0000877 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID03424550 rno-miR-338-3p miRNA MIMAT0000581 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID03481612 rno-miR-193a-3p miRNA MIMAT0000868 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID03522366 rno-miR-181a-5p miRNA MIMAT0000858 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID03584876 rno-miR-758-3p miRNA MIMAT0005335 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID03712809 rno-miR-181c-5p miRNA MIMAT0000857 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID03723230 rno-miR-667-5p miRNA MIMAT0017369 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID03795835 rno-miR-20b-5p miRNA MIMAT0003211 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID03832756 rno-miR-181b-5p miRNA MIMAT0000859 Nbr1 mRNA 303554 Prediction 0.1828 Nbr1 RAID03907999 rno-miR-494-3p miRNA MIMAT0003193 Nbr1 mRNA 303554 Prediction 0.1828