DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004720 rno-miR-30e* 25747 Ppara cgACAUU-UGUAGG-C--UGACUUUc | ||| || ||| | ||||||| cuUCUAAGACUUCCUGCUACUGAAAu 2 21 173 198 [rn4:7:123807026-123807051:+] 0.4502 153 7 -12.22 -0.3154 MIMAT0004722 rno-miR-30d* 25747 Ppara cgucgUUUGUA-GAC--UGACUUUc |:|| | ||| ||||||| uucuaAGACUUCCUGCUACUGAAAu 2 18 174 198 [rn4:7:123807027-123807051:+] 0.4502 151 7 -11.10 -0.3154 MIMAT0000809 rno-miR-30a* 25747 Ppara cgacgUUUGUAGG-C--UGACUUUc |:|| ||| | ||||||| uucuaAGACUUCCUGCUACUGAAAu 2 18 174 198 [rn4:7:123807027-123807051:+] 0.4502 151 7 -12.75 -0.3154 MIMAT0005281 rno-miR-871 25747 Ppara acacUGGCCGUGGUUAGACUUAu |:| :||: ||||||| ccacAUCCUUACU-UUCUGAAUg 2 20 147 168 [rn4:7:123807000-123807021:+] 0.4502 145 7 -13.43 -0.5027 MIMAT0012825 rno-miR-105 25747 Ppara uggugucuguagACUCGUGAAc ||||||||| uuacuuucugaaUGAGCACUUc 2 11 155 176 [rn4:7:123807008-123807029:+] 0.4502 150 7 -15.41 -0.4212 MIMAT0012854 rno-miR-764 25747 Ppara uccuccuguacACUCGUGg ||||||| uacuuucugaaUGAGCACu 2 9 156 174 [rn4:7:123807009-123807027:+] 0.4502 140 7 -11.44 -0.9033 MIMAT0000788 rno-miR-19b 25747 Ppara agucaaaaCGUACCUAAACGUGu ||| |||||||||| acaggagaGCAGGGAUUUGCACa 2 16 62 84 [rn4:7:123806915-123806937:+] 0.4502 167 7 -26.67 -0.3717 MIMAT0000789 rno-miR-19a 25747 Ppara agucaaaaCGUAUCUAAACGUGu ||| :||||||||| acaggagaGCAGGGAUUUGCACa 2 16 62 84 [rn4:7:123806915-123806937:+] 0.4502 163 7 -24.48 -0.3717 MIMAT0000794 rno-miR-24 25747 Ppara gacaaggacgaCUUGACUCGGu |::||||||| ggagaugaagaGGGCUGAGCCu 2 12 107 128 [rn4:7:123806960-123806981:+] 0.4502 147 7 -17.74 -0.1032 MIMAT0000895 rno-miR-291a-3p 25747 Ppara ccguguGUUUCACCUUCGUGAAa | :| || ||||||| uacuuuCUGAAUG--AGCACUUc 2 18 156 176 [rn4:7:123807009-123807029:+] 0.4502 142 7 -10.62 -0.3970 MIMAT0005304 rno-miR-301b 25747 Ppara cgaaACUGUUAUGGUAAC-GUGAc ||::|: :||:||| |||| gagaUGGUAG-GCCGUUGCCACUg 2 20 9 31 [rn4:7:123806862-123806884:+] 0.4502 125 0 -22.26 -0.2883

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G014219 Ppara Rattus norvegicus 25747

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Ppara; Nr1c1; Ppar rno-let-7e 130 150 -UGAUAUGUUGGAGGAUGGAGU :| ||:||: ||||| || GGCAAUGCAGGCUCCUCCCA-- Ppara; Nr1c1; Ppar rno-let-7i 79 95 UGUCGUGUUUGAUGAUGGAGU |||||:|: :|||| --UGCACAGAUG---GCCUCC Ppara; Nr1c1; Ppar rno-miR-125b 26 50 AGUGUUCAA-UCCC---AGAGUCCCU ||| ||| |||| ||| ||| CCACU-GUUCAGGGACCUCUGAGGU- Ppara; Nr1c1; Ppar rno-miR-128a 13 34 UUUUC-UCUGGCCAA-GUGACACU :| ||:||| |||||| --UGGUAGGCCGUUGCCACUGUU- Ppara; Nr1c1; Ppar rno-miR-128b 10 34 -CUUUC-UCUGGCCAA-GUGACACU || :| ||:||| |||||| AGAUGGUAGGCCGUUGCCACUGUU- Ppara; Nr1c1; Ppar rno-miR-130b 54 85 UACGGGAAAGUA-GU-------------AACGUGAC |||| ||| || |||||| -GGCCC---CAUACAGGAGAGCAGGGAUUUGCACA- Ppara; Nr1c1; Ppar rno-miR-140* 17 51 ACAGGCAC------CAAGA---UGG-GACACCAU | |||| |||| ||| ||| ||| AGGCCGUUGCCACUGUUCAGGGACCUCUGAGGUC Ppara; Nr1c1; Ppar rno-miR-151* 126 148 AUGAUCUGACAC--UCGAGGAGCU ||||:| || :||||||| -CCUAGGCAAUGCAGGCUCCUCC- Ppara; Nr1c1; Ppar rno-miR-152 174 197 -GGGUUCAAGACAGUACG-UGACU- :|:||| || || ||| ||||| UUCUAAGA-CU-UCCUGCUACUGAA Ppara; Nr1c1; Ppar rno-miR-154 64 94 GCUUC-CGU-------UGUGCCUAUUGGAU |:|| ||| :||| |||::||| AGGAGAGCAGGGAUUUGCACAGAUGGCCUC Ppara; Nr1c1; Ppar rno-miR-189 111 135 UGACUAUAGUCGAGUC--AUCCGUG ||| : :||| || |||||| -AUGAAGAGGGCUGAGCCUAGGCAA Ppara; Nr1c1; Ppar rno-miR-193 6 26 -GACCCUGAAACAUCCGGUCAA- ||| ||: ||||||| ||| CCUGAGAUG--GUAGGCC-GUUG Ppara; Nr1c1; Ppar rno-miR-19a 62 86 AGUCAAAACGUAUCUAAACGUGU- ||| ||| :|||||||||| ACAGGAGAGCAGGGAUUUGCACAG Ppara; Nr1c1; Ppar rno-miR-19b 62 86 AGUCAAAACGUACCUAAACGUGU- ||| ||| ||||||||||| ACAGGAGAGCAGGGAUUUGCACAG Ppara; Nr1c1; Ppar rno-miR-206 145 165 -GGUGUGUGAAGGAAUGUAAGGU || |||| ||||||| |||: UCC-CACA--UCCUUACUUUCUG Ppara; Nr1c1; Ppar rno-miR-20a 152 177 GAUGGACGUGA------UAUUCGUGAAAU ||| :||| ||:||||||| --UCCU-UACUUUCUGAAUGAGCACUUC- Ppara; Nr1c1; Ppar rno-miR-20a* 115 141 ACAUUCACGAG------CA-UUACGUCA :|| ||| | ||||||| --AGAGGGCUGAGCCUAGGCAAUGCAGG Ppara; Nr1c1; Ppar rno-miR-20b 152 177 UGGACGUGA------UACUCGUGAAAC ||| :||| |||||||||| UCCU-UACUUUCUGAAUGAGCACUUC- Ppara; Nr1c1; Ppar rno-miR-20b* 114 141 GUCUUCACGA-----GUGUG--ACGUCA |||:| ||| :| :| ||||| AAGAGG-GCUGAGCCUAGGCAAUGCAGG Ppara; Nr1c1; Ppar rno-miR-24 103 129 GACAAGGACGACU--------UGACUCGGU |:|| || :||||||| ----CCUUGGAGAUGAAGAGGGCUGAGCCU Ppara; Nr1c1; Ppar rno-miR-25 117 138 AGUCUGGCUCUGUUCACGUUAC- :|:|:||| | || |||||| -AGGGCUGAGCCUAG-GCAAUGC Ppara; Nr1c1; Ppar rno-miR-27a 12 34 CGCCU--UGAAU-CGGUGACACUU :|| :| |||||||| AUGGUAGGCCGUUGCCACUGUU-- Ppara; Nr1c1; Ppar rno-miR-27b 14 34 -CGUCUUGAAUCGGUGACACUU |:||: | |||||||| GGUAGGCCGUUGCCACUGUU-- Ppara; Nr1c1; Ppar rno-miR-28 117 147 GAGUUAUCUGAC-----------AC--UCGAGGAA :|:||| || :|||||| -----AGGGCUGAGCCUAGGCAAUGCAGGCUCCUC Ppara; Nr1c1; Ppar rno-miR-296 33 60 UGUCCUA----ACUCCCC-C-CCGGGA ||||: ||||| | ||||| UCAGGGACCUCUGAGGUCUGCGGCCCC Ppara; Nr1c1; Ppar rno-miR-299 7 24 UACAUACACCCUGCCAUUUGGU- || ||:||||::||: ------CUGAGAUGGUAGGCCGU Ppara; Nr1c1; Ppar rno-miR-29b 189 207 UUGUGACUAAAGUUUACCACGAU- :||||| ||||||| |: -CUACUGA-----AAUGGUGGUGA Ppara; Nr1c1; Ppar rno-miR-29c 190 207 -UGGCUAAAGUUUACCACGAU- ||:|| ||||||| |: UACUGA-----AAUGGUGGUGA Ppara; Nr1c1; Ppar rno-miR-325 155 180 UGUGAAUG----ACUCGUGGAUGAUCC :|||| |||||||:| ||| UUACUUUCUGAAUGAGCACUU-CUAA- Ppara; Nr1c1; Ppar rno-miR-328 61 87 -UGCCUUCCCGUCUCUCC-CG-GUC- || |:|| ||||:|| || ||| UACAGGAGAGCAGGGAUUUGCACAGA Ppara; Nr1c1; Ppar rno-miR-337 53 78 UUUCCGUAGUAUAUCCUCGA---CUU- ||| |||| ||||| |:| --CGGCCCCAUACAGGAGAGCAGGGAU Ppara; Nr1c1; Ppar rno-miR-339 43 78 -ACUCGAGGA------------CCUCCUGUCCCU- |||| ||: |||| :|||||| CUGAGGUCUGCGGCCCCAUACAGGAGAGCAGGGAU Ppara; Nr1c1; Ppar rno-miR-345 26 56 CGUGACCUGAUCC--------CCAGUCGU- ||||| | :|| |||| ||: CCACUGUUCAGGGACCUCUGAGGUCUGCGG Ppara; Nr1c1; Ppar rno-miR-346 114 143 -UCUCC--------GUCCGUGA-GUCCGUCUGU ||||| :||||| ||||| AAGAGGGCUGAGCCUAGGCAAUGCAGGCU---- Ppara; Nr1c1; Ppar rno-miR-349 44 77 UCUCCA-----------AU--UCUGUCGUCCCGAC ||||| || :|| ||||||| UGAGGUCUGCGGCCCCAUACAGGAGAGCAGGGA-- Ppara; Nr1c1; Ppar rno-miR-351 15 41 -GUCCGAGUUUCCC-GAGGAGUCCCU- :|||| |: | || :||||||| GUAGGC-CGUUGCCACUGUUCAGGGAC Ppara; Nr1c1; Ppar rno-miR-352 175 195 AUGAUAC-GUUGGAUGAUGAGA ||| | | |||:||||| -UCUAAGACUUCCUGCUACUG- Ppara; Nr1c1; Ppar rno-miR-370 37 76 -UUGG----UCCAA--GGUGGGGU---------CGUCCG :||| |||| | :||||| ||||| GGACCUCUGAGGUCUGCGGCCCCAUACAGGAGAGCAGGG Ppara; Nr1c1; Ppar rno-miR-383 24 53 UCGGUGUCAG-----UGGAAGACU--AGA- ||||| ||: ||| ||||| ||| UGCCACUGUUCAGGGACC-UCUGAGGUCUG Ppara; Nr1c1; Ppar rno-miR-424 174 196 -AGGUUUUGUACUUAACGACGAC- ||:||:|| |||| ||| UUCUAAGACUUCC--UGCUACUGA Ppara; Nr1c1; Ppar rno-miR-485 73 99 -CUUAAGUAGUG----CCGGUCGGAGA |:|||:: ||| |||| |||| GGGAUUUG-CACAGAUGGCCUCCCUCC Ppara; Nr1c1; Ppar rno-miR-487b 198 226 -UCACCUACUGGGA------CAUGCUAA- :|||| |||:| ||| |||| UGGUGG-UGAUCAGAGGCUAGUAGGAUUC Ppara; Nr1c1; Ppar rno-miR-540 32 53 -GGUCCUAGCUGGAGACU--GGA- :|||| ||||||||| :|| UUCAGG---GACCUCUGAGGUCUG Ppara; Nr1c1; Ppar rno-let-7e 131 151 uGAUAUGUUGGAGGAUGGAGU | ||:||: ||||| || || gCAATGCAGGCTCCTCCCACA Ppara; Nr1c1; Ppar rno-let-7i 77 98 uguCGUGUUUGAU-GAUGGAGu |||||:|: : || |||| tttGCACAGATGGCCTCCCTCc Ppara; Nr1c1; Ppar rno-miR-125b 8 39 AGUGUUCAAUCC--CA--------GAGUCCCU | | | | |||| || :||||||| TGAGATGGTAGGCCGTTGCCACTGTTCAGGGA Ppara; Nr1c1; Ppar rno-miR-128a 10 34 UUUUC--UCUGGCCA-AGUGACAcu |:| | ||:||| | |||||| AGATGGTAGGCCGTTGCCACTGTtc Ppara; Nr1c1; Ppar rno-miR-128b 11 34 CUUUC-UCUGGCCA-AGUGACAcu || :| ||:||| | |||||| GATGGTAGGCCGTTGCCACTGTtc Ppara; Nr1c1; Ppar rno-miR-130b 54 85 uacGGGAAAG-----UAGU-----AACGUGac ||| | | | || |||||| ggcCCCATACAGGAGAGCAGGGATTTGCACag Ppara; Nr1c1; Ppar rno-miR-151* 125 148 auGAUCUG--ACACUCGAGGAGcu ||||:| || :||||||| gcCTAGGCAATGCAGGCTCCTCcc Ppara; Nr1c1; Ppar rno-miR-152 175 195 gGGUUCAAGACAGUACG-UGACU |:||| || || ||| ||||| tCTAAG-ACT-TCCTGCTACTGA Ppara; Nr1c1; Ppar rno-miR-154 69 93 gCUUCCGU---UGUGCCUAUUGGAu | ||| | :||| |||::||| aGCAGGGATTTGCACAGATGGCCTc Ppara; Nr1c1; Ppar rno-miR-189 110 134 ugACUAUAGUCGAGUC--AUCCGUg ||| : :||| || |||||| gaTGAAGAGGGCTGAGCCTAGGCAa Ppara; Nr1c1; Ppar rno-miR-193 7 24 GACCCUGAAACAUCCGGUCAA ||| || | ||||||| ||| CTGAGA--TGGTAGGCC-GTT Ppara; Nr1c1; Ppar rno-miR-19a 62 84 aGUCAAAACGUAUCUAAACGUGU ||| ||| :|||||||||| aCAGGAGAGCAGGGATTTGCACA Ppara; Nr1c1; Ppar rno-miR-19b 62 84 aGUCAAAACGUACCUAAACGUGU ||| ||| ||||||||||| aCAGGAGAGCAGGGATTTGCACA Ppara; Nr1c1; Ppar rno-miR-206 143 164 GGUGUGUGAAGGAAUGUAAGgu || | ||| ||||||| ||| CCTCCCACATCCTTACTTTCtg Ppara; Nr1c1; Ppar rno-miR-20a 155 177 gAUGGACGUGAUAUUCGUGAAau |||:| | ||:||||||| tTACTTTCTGAATGAGCACTTct Ppara; Nr1c1; Ppar rno-miR-20b 157 177 UGGACGUGAUACUCGUGAAac ||:| | |||||||||| ACTTTCTGAATGAGCACTTct Ppara; Nr1c1; Ppar rno-miR-24 98 128 GACAAGGA----CGACUU-----GACUCGGu || ||| | |||| ||||||| CTTACCCTTGGAGATGAAGAGGGCTGAGCCt Ppara; Nr1c1; Ppar rno-miR-25 116 136 aguCUGGCUCUGUUCACGUUAC |:|:||| | || |||||| gagGGCTGAGCCTAG-GCAATG Ppara; Nr1c1; Ppar rno-miR-27a 15 35 CGCCUUGAAUCGGUGACAcuu |: |: | | |||||||| GTAGGCCGTTGCCACTGTtca Ppara; Nr1c1; Ppar rno-miR-27b 15 35 CGUCUUGAAUCGGUGACAcuu |:||: | | |||||||| GTAGGCCGTTGCCACTGTtca Ppara; Nr1c1; Ppar rno-miR-28 121 146 GAGUU--AUCUG--ACACUCGAGGAa || |: |||:| || :|||||| CTGAGCCTAGGCAATGCAGGCTCCTc Ppara; Nr1c1; Ppar rno-miR-299 1 22 uacauacACCCUGCCAUUUGGu || ||:||||::|| tttttccTGAGATGGTAGGCCg Ppara; Nr1c1; Ppar rno-miR-29a 190 208 uUGGCUAAAGUCUACCACGAu ||:|| | |:||||| | tACTGAAAT--GGTGGTGATc Ppara; Nr1c1; Ppar rno-miR-29b 182 205 uuguGACUA-AAGUUUACCACGAu ||| | | |||||||| | cttcCTGCTACTGAAATGGTGGTg Ppara; Nr1c1; Ppar rno-miR-29c 185 205 uGGCUA-AAGUUUACCACGAu |:| | | |||||||| | cCTGCTACTGAAATGGTGGTg Ppara; Nr1c1; Ppar rno-miR-325 170 193 uGUGAAUGA--CUCGUGGAUGAUcc ||||| || || : |||:||| gCACTT-CTAAGACTTCCTGCTAct Ppara; Nr1c1; Ppar rno-miR-328 72 93 UGCCUUCCCGUCUCUCCCGGuc | ||| ||| ||| |||| AGGGATTTGCACAGATGGCCtc Ppara; Nr1c1; Ppar rno-miR-337 51 75 uuuCCGUAGUAUAUC--CUCGACuu ||| |||| || |||| | tgcGGCCCCATACAGGAGAGCAGgg Ppara; Nr1c1; Ppar rno-miR-339 51 76 AC-UCGAGG-A---CCUCCU-GUCCCU || :|| || | ||| || |||||| TGCGGCCCCATACAGGA-GAGCAGGGA Ppara; Nr1c1; Ppar rno-miR-346 122 142 uCUCCG-UCCGUGAGUCCGUCUGu ||| | ||||| | ||||:| tGAGCCTAGGCAAT---GCAGGCt Ppara; Nr1c1; Ppar rno-miR-349 57 78 ucuccaaUUCUGUCGUCCCGAc |:|| ||||||| | cccatacAGGAGAGCAGGGATt Ppara; Nr1c1; Ppar rno-miR-351 16 39 gUCCGAGUUUC-CCGAGGAGUCCCU |||| |: | || :||||||| tAGGC-CGTTGCCACTGTTCAGGGA Ppara; Nr1c1; Ppar rno-miR-352 174 195 AUGAUAC-GUUGGAUGAUGAga | ||| | | |||:||||| TTCTAAGACTTCCTGCTACTga Ppara; Nr1c1; Ppar rno-miR-370 53 75 uugguccaagguggggUCGUCCg |||||| cggccccatacaggagAGCAGGg Ppara; Nr1c1; Ppar rno-miR-424 175 194 AGGUUUUGUACUUAACGACGAC ||:||:|| | |||| ||| TCTAAGACTT--CCTGCTACTG Ppara; Nr1c1; Ppar rno-miR-485 74 94 CUUAAGUAGUGCCGGUCGGAGa |:|||:: ||| | ::||||| GGATTTG-CACAGATGGCCTCc Ppara; Nr1c1; Ppar rno-miR-487b 199 224 uCACCUACUGG-----GA-CAUGCUAA |||| |||:| || ||| |||| gGTGG-TGATCAGAGGCTAGTAGGATT Ppara; Nr1c1; Ppar rno-miR-540 33 49 gGUCCUAGCUGGAGACUgga |||| ||||||||| tCAGG---GACCTCTGAggt Ppara; Nr1c1; Ppar rno-miR-19a 77 84 A--------------------GUCAAAACGUAUCUAAACGUGU ||| ||| :|||||||||| UCUGAGGUCUGCGGCCCCAUACAGGAGAGCAGGGAUUUGCACAG Ppara; Nr1c1; Ppar rno-miR-19b 77 84 A--------------------GUCAAAACGUACCUAAACGUGU ||| ||| ||||||||||| UCUGAGGUCUGCGGCCCCAUACAGGAGAGCAGGGAUUUGCACAG Ppara; Nr1c1; Ppar rno-miR-20a* 133 140 ACA---------------UUCACGAG------CA-UUACGUCA :|| ||| | ||||||| CUUACCCUUGGAGAUGAAGAGGGCUGAGCCUAGGCAAUGCAGG Ppara; Nr1c1; Ppar rno-miR-24 121 128 -------------------GACAAGGACGA--CUUGACUCGGU :|| || |::||||||| AUGGCCUCCCUCCUUACCCUUGGAGAUGAAGAGGGCUGAGCCU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ppara RAID00019105 rno-miR-19a-3p miRNA MIMAT0000789 Ppara mRNA 25747 Prediction 0.2202 Ppara RAID00308720 rno-miR-299a-3p miRNA MIMAT0017167 Ppara mRNA 25747 Prediction 0.1828 Ppara RAID00636306 rno-miR-299b-3p miRNA MIMAT0017834 Ppara mRNA 25747 Prediction 0.1828 Ppara RAID00762672 rno-miR-291a-3p miRNA MIMAT0000895 Ppara mRNA 25747 Prediction 0.1828 Ppara RAID00839975 rno-miR-301b-3p miRNA MIMAT0005304 Ppara mRNA 25747 Prediction 0.1828 Ppara RAID00955529 rno-miR-216a-3p miRNA MIMAT0017160 Ppara mRNA 25747 Prediction 0.1828 Ppara RAID01426356 rno-miR-19b-3p miRNA MIMAT0000788 Ppara mRNA 25747 Prediction 0.2202 Ppara RAID03959115 rno-miR-24-3p miRNA MIMAT0000794 Ppara mRNA 25747 Prediction 0.1828