DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000547 rno-miR-322* 116643 Vcp acaacgucgcgaaGUACAAa |||||| aaaaaaaaaaagaCAUGUUg 2 8 512 531 [rn4:5:59472132-59472151:-] 0.6098 120 6 -5.81 -0.3188 MIMAT0000570 rno-miR-331 116643 Vcp aagauccUAUCC-GGGUCCCCg ||:|| ||||||| ucgcccaAUGGGAACCAGGGGu 2 15 63 84 [rn4:5:59472579-59472600:-] 0.6529 149 7 -22.62 -0.1944 MIMAT0004646 rno-miR-338* 116643 Vcp gugagucgugguccUAUAACAa ||:|||| aaaaaaaaaaagacAUGUUGUa 2 9 512 533 [rn4:5:59472130-59472151:-] 0.6098 124 0 -4.43 -0.1105 MIMAT0004717 rno-miR-29b-2* 116643 Vcp gauucggugguacacUUUGGUc |||||| ucauaagcaguuucuAAACCAa 2 8 481 502 [rn4:5:59472161-59472182:-] 0.6098 120 6 -9.55 -0.3767 MIMAT0004723 rno-miR-34c* 116643 Vcp ggaccgacacaccaaUCACUAa |||||| aagcgauaaaauaaaAGUGAUu 2 8 176 197 [rn4:5:59472466-59472487:-] 0.6529 120 6 -7.65 -0.2142 MIMAT0004739 rno-miR-204* 116643 Vcp uuGCAGGGAAACGGAAGG-GUCg :| ||: || | |||| ||| caUGGCCUGUUCCAUUCCUCAGu 2 21 90 112 [rn4:5:59472551-59472573:-] 0.6529 124 0 -18.85 -0.3935 MIMAT0000901 rno-miR-299 116643 Vcp uacauacacccugccAUUUGGu |||||| aucauaagcaguuucUAAACCa 2 8 480 501 [rn4:5:59472162-59472183:-] 0.6098 120 6 -6.51 -0.5607 MIMAT0001547 rno-miR-450a 116643 Vcp guaauccuuguGUAGCGUUUUu ::|:|||||| cagggguuuucUGUUGCAAAAa 2 12 144 165 [rn4:5:59472498-59472519:-] 0.6529 131 6 -15.52 -0.2055 MIMAT0003116 rno-miR-501 116643 Vcp aaagUGGGUCCCUGUUUCCUAa || :: | ||||||| aaagACAUGUUGUAAAAGGAUa 2 19 520 541 [rn4:5:59472122-59472143:-] 0.6098 142 7 -9.26 -1.3079 MIMAT0003124 rno-miR-412 116643 Vcp ugccgaucACCUGGUCCACUUCa |||: |||||||| uuuucauuUGGG--AGGUGAAGa 2 16 196 216 [rn4:5:59472447-59472467:-] 0.6529 148 7 -16.58 -1.0479 MIMAT0004791 rno-miR-379* 116643 Vcp caaUCACCU---GGUACAAUGUAUc :|| || ::|| ||||||: guaGGUUGAUUUUUAUUUUACAUGc 2 20 431 455 [rn4:5:59472208-59472232:-] 0.6098 134 0 -9.04 -0.1957 MIMAT0003204 rno-miR-409-5p 116643 Vcp guUUCAACGAGCCCAUUGGa ::|| |: | ||||||| uuGGGUGGUGCAGGUAACCu 2 19 270 289 [rn4:5:59472374-59472393:-] 0.6313 154 7 -15.32 -0.4754 MIMAT0005282 rno-miR-872 116643 Vcp ggACUUGAU-UGUUCAUUGGAa ||::: : :||:||||||| uuUGGGUGGUGCAGGUAACCUg 2 20 269 290 [rn4:5:59472373-59472394:-] 0.6313 154 7 -19.90 -0.3064 MIMAT0005289 rno-miR-881 116643 Vcp agauaagucuuuacGGUGUCAa ||||||| ugcccccaccaucaCCACAGUa 2 9 311 332 [rn4:5:59472331-59472352:-] 0.6098 140 7 -11.77 -0.9398 MIMAT0005290 rno-miR-883 116643 Vcp uaugacucucuacaaCGUCAAu |||||| gaagacuaaucauaaGCAGUUu 2 8 472 493 [rn4:5:59472170-59472191:-] 0.6098 120 6 -7.58 -0.2413 MIMAT0005323 rno-miR-532-3p 116643 Vcp acguucggaacccacACCCUCc |||||| aaagugauuuucauuUGGGAGg 2 8 189 210 [rn4:5:59472453-59472474:-] 0.6529 120 6 -15.53 -0.1004 MIMAT0005338 rno-miR-770 116643 Vcp gcACCGGGUC-UGUGCACCACGa || : :|| :: ||||||| ucUGUUGUAGUUUGGGUGGUGCa 2 21 259 281 [rn4:5:59472382-59472404:-] 0.6313 143 7 -15.56 -0.4372 MIMAT0012826 rno-miR-220 116643 Vcp uccagagACUGUG-ACACCACc | || : ||||||| gugcaggUAACCUGUGUGGUGu 2 15 277 298 [rn4:5:59472365-59472386:-] 0.6313 141 7 -17.73 -0.1661 MIMAT0012828 rno-miR-362 116643 Vcp uaaguguggauccaaggUUCCUAa |||||| aaaaagacauguuguaaAAGGAUa 2 8 518 541 [rn4:5:59472122-59472145:-] 0.6098 120 6 -10.33 -0.4240 MIMAT0012840 rno-miR-802 116643 Vcp uuccUACUUAGAAACAAUGACu ||| |:| ||||||| uuacAUGCUUUUGAGUUACUGu 2 19 448 469 [rn4:5:59472194-59472215:-] 0.6098 154 7 -12.23 -0.9982 MIMAT0012845 rno-miR-935 116643 Vcp cgCCAUCGCCUUCGCCAUU-GACc |||:|:| | ||||| ||| ugGGUGGUGCA---GGUAACCUGu 2 22 271 291 [rn4:5:59472372-59472392:-] 0.6313 121 0 -19.16 -0.2188 MIMAT0012850 rno-miR-465 116643 Vcp guGUGGUCGUGGCAAGAUUUau ||: |||| : ||||||| auCAUAAGCAGU-UUCUAAAcc 3 21 480 500 [rn4:5:59472163-59472183:-] 0.6098 142 0 -12.29 -0.2995 MIMAT0000583 rno-miR-339-5p 116643 Vcp gcacucgaggaccuCCUGUCCCu |||||||| cccagucagacucuGGACAGGGg 2 10 127 149 [rn4:5:59472514-59472536:-] 0.6529 145 7 -23.26 -0.4389 MIMAT0000600 rno-miR-129 116643 Vcp cguucgggucUGGCGUUUUUc :::||||||| gggguuuucuGUUGCAAAAAa 2 12 146 166 [rn4:5:59472497-59472517:-] 0.6529 143 7 -9.91 -1.3099 MIMAT0000600 rno-miR-129 116643 Vcp cguucgggucuggcGUUUUUc |||||| agcaguuucuaaacCAAAAAa 2 8 486 506 [rn4:5:59472157-59472177:-] 0.6098 120 6 -11.86 -0.7180 MIMAT0000611 rno-miR-135b 116643 Vcp agUGUAUCCUUACUUUUCGGUAu | | | || ||||| ||| aaAAAAAAAAAAAAAAAGACAUg 2 22 506 528 [rn4:5:59472135-59472157:-] 0.6098 125 0 -6.00 -0.1193 MIMAT0000781 rno-miR-9 116643 Vcp agUAUGUCGAUCUAUUGGUUUcu | :|||:| ||||||| auAAGCAGUUUCUAAACCAAAaa 3 22 483 505 [rn4:5:59472158-59472180:-] 0.6098 137 0 -12.64 -0.5842 MIMAT0000790 rno-miR-21 116643 Vcp agUUGUAGUCAGACUAUUCGau || | :| || |||||| ggAAGACUAAUC--AUAAGCag 3 21 471 490 [rn4:5:59472173-59472192:-] 0.6098 129 0 -4.26 -0.1343 MIMAT0000841 rno-miR-135a 116643 Vcp agUGUAUCCUUAUUUUUCGGUAu | | | || |||||| ||| aaAAAAAAAAAAAAAAAGACAUg 2 22 506 528 [rn4:5:59472135-59472157:-] 0.6098 133 0 -7.18 -0.1193 MIMAT0000843 rno-miR-137 116643 Vcp gaugcgcaUAA-GAAUUCGUUAUu ||| | ||||:||| aaaaaaaaAUUACAAAAGCGAUAa 2 16 161 184 [rn4:5:59472479-59472502:-] 0.6529 134 0 -9.16 -0.1622 MIMAT0000853 rno-miR-150 116643 Vcp gugaccauguucccAACCCUCu ||||||| aaagugauuuucauUUGGGAGg 2 9 189 210 [rn4:5:59472453-59472474:-] 0.6529 140 7 -13.85 -1.0466 MIMAT0000864 rno-miR-187 116643 Vcp ggccgacgUUGUGUUCUGUGCu || | ||||||:| aaaaaaaaAAAAAAAGACAUGu 2 15 508 529 [rn4:5:59472134-59472155:-] 0.6098 138 0 -11.01 -0.1249

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G053293 Vcp Rattus norvegicus 116643

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Vcp rno-let-7e 349 375 -UGAUAUGUU--GGAGG--AUGGAGU :||:| ||| ||||| |||||| UGCUGUCCAAGCCCUCCCUUACCUCU Vcp rno-miR-125b 46 77 AGUGUUCAAUCCCA--GAGU------CCCU- | ::| |:||| |||: |||| CCUGGGGGUGGGGGCGCUCGCCCAAUGGGAA Vcp rno-miR-129* 40 62 UACGAAAAA-CCCCAUUCCCGAA ||:| |||||::|||| UUGUUCCCUGGGGGUGGGGGCG- Vcp rno-miR-132 25 46 GCUGGUACCGACAUCUG--ACAAU |:|| |||||| ||| |||| UGGCC-UGGCUG--GACCUUGUUC Vcp rno-miR-133a 377 405 UGUC-GACCA----ACUUC--CCCUGGUU ||| |||| ||:| |||:|| CCAGCCUGGGUAGGUGGACAAGGGGCCU- Vcp rno-miR-133b 378 405 AUC-GACCA----ACUUC--CCCUGGUU || |||| ||:| |||:|| CAGCCUGGGUAGGUGGACAAGGGGCCU- Vcp rno-miR-140* 267 299 ACAGG--CACCAAGA----UGGG-ACACCAU- ||:: ||||| |||: ||||||: AGUUUGGGUGGUGCAGGUAACCUGUGUGGUGU Vcp rno-miR-144 328 347 GAUCAUGUAGUAGAUAUGACAU |||| |||||||||| -CAGUAAAGCAUCUAUACUC-- Vcp rno-miR-150 31 61 GUGACCAUG----------UUCCCAACCCUCU :|||| || ::||| ||||:| GGCUGG-ACCUUGUUCCCUGGGGG-UGGGGGC Vcp rno-miR-151 394 417 GGAGUUCCUCGGAGUCA---GAUCA |||||:|||||||| ||:| --ACAAGGGGCCUCAGUUUGCUGGG Vcp rno-miR-154 271 292 GCUUCCGUUGUGCCUAUUGGAU- :||: ::| |:||||||: --UGGGUGGUGCAGGUAACCUGU Vcp rno-miR-191 230 267 -UCGACGAA----AACCCU---------AAGGCAAC- || ||| ||||| |||:|||| AAGGAGCUGGGCCUUGGGCCCUCACCAUUUCUGUUGU Vcp rno-miR-194 137 163 -AGG--UGUACCUCAAC-GACAAUGU- ||: ||| ||:||| |||||:|| CUCUGGACA-GGGGUUUUCUGUUGCAA Vcp rno-miR-204 383 403 -UCCGUAUCCUACUGUUUCCCUU :||: ||| |||||:||| UGGGU--AGGUGGACAAGGGGC- Vcp rno-miR-207 204 238 UUCCCUCC---UCUC-------GGUCC-UCUUCG- |||||| |||| |||| ||:||| -UGGGAGGUGAAGAGUGAAUUACCAGCAAGGAGCU Vcp rno-miR-20a* 270 298 -ACAU-UCACGAGCAU----UACGUCA- || :|||| ||| :||::|| UUGGGUGGUGCAGGUAACCUGUGUGGUG Vcp rno-miR-211 383 403 -UCCGUUUCCUACUGUUUCCCUU :||: ||| |||||:||| UGGGU--AGGUGGACAAGGGGC- Vcp rno-miR-212 25 46 -CCGGCACUGACCUCUGACAAU |||| ||:||||| :|||| UGGCC-UGGCUGGACCUUGUUC Vcp rno-miR-214 18 37 GACGGACAGACACGGAC-GACA || | ||| ||||| ||| -AGCGAG-CUG-GCCUGGCUGG Vcp rno-miR-23b 281 302 -CCAUUAGGGAC-CGUUACACUA |||| |||| |: ||||| AGGUAA--CCUGUGUGGUGUGAA Vcp rno-miR-24 224 244 GACAAGGACGA--CUUGACUCGGU || || ||:|||:||| ----ACCAGCAAGGAGCUGGGCCU Vcp rno-miR-28 343 365 -GAGUUAUCUGACAC--UCGAGGAA |||||| :|||| ||| ||| ACUCAAU--GCUGUCCAAGC-CCUC Vcp rno-miR-290 244 276 UUUUUCACGGGGGU------------AUCAAACUC- :| ||||:|| |||||||:| ---UGG-GCCCUCACCAUUUCUGUUGUAGUUUGGGU Vcp rno-miR-292-5p 395 419 GUUUUCUCGGGGGUCAA---ACUCA- |||:| ||:||||| ||:|| --CAAGGGGCCUCAGUUUGCUGGGUG Vcp rno-miR-296 227 253 -UG-UCCUAACUCCCC---CCCGGGA- :| |||| ||| ||||||| AGCAAGGAGCU-GGGCCUUGGGCCCUC Vcp rno-miR-299 263 306 UACAUA-----CACC--------------CUGC-CAUUUGGU |||| |||| | | ||:||||: UUGUAGUUUGGGUGGUGCAGGUAACCUGUGUGGUGUGAACCGA Vcp rno-miR-29a 252 282 UUGGCUAAAG-----------UCUACCACGAU ||| ||||| :|:|||||| CACC-AUUUCUGUUGUAGUUUGGGUGGUGCA- Vcp rno-miR-29b 259 282 UUGUGACUA----AAGUUUACCACGAU ||| ||: :|||||| ---UCUGUUGUAGUUUGGGUGGUGCA- Vcp rno-miR-30a-5p 403 426 GAAGGUCAGCU--CCUACAAAUGU- :||||: ||:||||||:| --CUCAGUUUGCUGGGUGUUUAUAU Vcp rno-miR-30b 410 454 UCGACUCACA-------------UCCUAC--------AAAUGU ||||:|||| ||| || |||||| UGCUGGGUGUUUAUAUAGAAAGUAGGUUGAUUUUUAUUUUACAU Vcp rno-miR-30c 410 454 -CGACUCUCA-----------CAUCCUAC--------AAAUGU ||||:| || ||||| || |||||| UGCUGGGUGUUUAUAUAGAAAGUAGGUUGAUUUUUAUUUUACAU Vcp rno-miR-30e 403 426 AGGUCAGUU--CCUACAAAUGU- :||||: ||:||||||:| CUCAGUUUGCUGGGUGUUUAUAU Vcp rno-miR-31 4 32 GUCGAUACGGUCGUA--------GAACGGA- |:||||||||| || |||| ---AUGUGCCAGCAUGCAGCGAGCUGGCCUG Vcp rno-miR-320 358 383 AAGCGGGAG-------AGUUGGGUCGAAAA |||||| || | ||||| --AGCCCUCCCUUACCUCUAGCCAGCC--- Vcp rno-miR-323 280 301 UCUCCAGCUGG-CACAUUACACG |||| ||| ||||::|||| -CAGGUA-ACCUGUGUGGUGUGA Vcp rno-miR-324-3p 372 395 -GGUCGUCGUGGACCCCGUCACC- |:||| :|||||| :|||| UCUAGCCA-GCCUGGGUAGGUGGA Vcp rno-miR-324-5p 36 63 UGUGGU-UACGGGAUCCCCUA---CGC- ||| :| ||||:|||| ||| -GACCUUGUUCCCUGGGGGUGGGGGCGC Vcp rno-miR-326 46 85 UGACCUCC-UUCCCG-G---------------GUCUCC- ||||:|| ::|||| | |||:|| CCUGGGGGUGGGGGCGCUCGCCCAAUGGGAACCAGGGGU Vcp rno-miR-329 395 421 UUUUUCCAAU-------CGACCCACACAA ||:|| ||||||||| -CAAGGGGCCUCAGUUUGCUGGGUGUU-- Vcp rno-miR-331 381 404 AAGAUCCUAUCCGGG---UCCCCG- ||:|| ||||: |||||| -CCUGGG-UAGGUGGACAAGGGGCC Vcp rno-miR-336 378 402 -UCUGAUCUA--UACCU--UCCCACU || ||:|:| :|||| |||| CAGCCUGGGUAGGUGGACAAGGGG-- Vcp rno-miR-337 188 216 -UUUC-CGU--AGUAUAUCCUCGACUU- |||| | |||| |:|||| |||| AAAAGUGAUUUUCAUUUGGGAGGUGAAG Vcp rno-miR-339 30 61 ACUCGA-----------GGACCUCCUGUCCCU :||| |||||:|| :||| -UGGCUGGACCUUGUUCCCUGGGGGUGGGGGC Vcp rno-miR-342 270 297 CUGCCCACG----CUAAA-GACACACUCU :||||| |:| |||||||: -UUGGGUGGUGCAGGUAACCUGUGUGGU- Vcp rno-miR-344 18 39 -UGC-CAGUCCGAAACCGAUCUAGU :|| | | ||| |||||:|| AGCGAG-CUGGCC-UGGCUGGAC-- Vcp rno-miR-349 205 240 -UCUCCAAUUCU---------GUCGU-CC-CGAC- :||||| |||| ||||| || |||| GGGAGGUGAAGAGUGAAUUACCAGCAAGGAGCUGG Vcp rno-miR-34a 296 316 -UUGUUGGUCGAUUCUGUGACGGU : ||||: ||:|:||||| UGUGAACCG----AGGCGCUGCCC Vcp rno-miR-34c 278 316 -CGUUA---------GUCGA--UUGA---UGUGACGGA |||: ::|: ||| :|:||||| UGCAGGUAACCUGUGUGGUGUGAACCGAGGCGCUGCCC Vcp rno-miR-351 386 418 -GUCCGA--GUUUCCC-GAGGA----GUCCCU :|||: |||:||| ||| | ||| GUAGGUGGACAAGGGGCCUCAGUUUGCUGGGU Vcp rno-miR-383 123 144 -UCGGUGUCAGUG-GAAGACUAGA |||| |||||| || |||: CAGCCCCAGUCAGACU-CUGGA-- Vcp rno-miR-409-5p 271 291 GUUUCAACGAGCCCAUUGGA- ::|| |: | |||||||| -UGGGUGGUGCAGGUAACCUG Vcp rno-miR-412 18 60 -UGC-CGAUC------ACCUGG-----------UCCACUUCA :|| |||:| |||||| :|||| | AGCGAGCUGGCCUGGCUGGACCUUGUUCCCUGGGGGUGGGGG Vcp rno-miR-422b 93 117 -CGGAAGAC-UGAGGU-UCAGGUCA |||| |:||| |||||: GGCCUGUUCCAUUCCUCAGUCCGA- Vcp rno-miR-431 11 40 ACGUAC------UG-CCGGA-CGUUCUGU ||||| :| ||||| || :||| AGCAUGCAGCGAGCUGGCCUGGCUGGACC Vcp rno-miR-483 203 222 UGUUCUGCCCUCCCCUCCUCACU- :|||||| || |||||| -----UUGGGAGGUGAAGAGUGAA Vcp rno-miR-493 23 43 -GACCGUGUGUCAUCUGGAAGU ||||| | : |:|||||| GCUGGC-CUGGCUGGACCUUG- Vcp rno-miR-503 291 315 GUCAUGACAA--GG----GCGACGAU ||: ||| || |||||| -UGUGGUGUGAACCGAGGCGCUGCC- Vcp rno-let-7e 350 374 uGAUAUGUU--GGA--GGAUGGAGu ||:| ||| ||| |:|||||| gCTGTCCAAGCCCTCCCTTACCTCt Vcp rno-miR-125b 65 83 aGUGUUCAAUCCCAGAGUCCCu | ||| |:|| | ||||| gCCCAA--TGGGAAC-CAGGGg Vcp rno-miR-129* 36 62 uacGAAAAA-----CCCCAUUCCCGaa ||| || |||||::|||| gacCTTGTTCCCTGGGGGTGGGGGCgc Vcp rno-miR-133a 383 405 uguCGACCAACU-UCCCCUGGuu |: ||| || | |||:|| tggGTAGGTGGACAAGGGGCCtc Vcp rno-miR-133b 384 405 auCGACCAACU-UCCCCUGGuu |: ||| || | |||:|| ggGTAGGTGGACAAGGGGCCtc Vcp rno-miR-140* 269 295 acaggCACCAAG---AUGGGACACcau ||||| | || |||||| tttggGTGGTGCAGGTAACCTGTGtgg Vcp rno-miR-144 327 355 gaUCAUGUAGUAGA-------UAUGACAu |||| | ||||| ||:|||| acAGTAAAGCATCTATACTCAATGCTGTc Vcp rno-miR-150 37 60 guGACCA--UGUUCCCAACCCUCu || || | :||| ||||:| acCTTGTTCCCTGGGGGTGGGGGc Vcp rno-miR-151 392 413 ggaGUUCCUCGGAGUCAGAuca |||||:||||||||:| ggaCAAGGGGCCTCAGTTTgct Vcp rno-miR-154 269 290 gcuuCCGUUGUGCCUAUUGGAu ||:::::| |:|||||| tttgGGTGGTGCAGGTAACCTg Vcp rno-miR-191 234 265 UCGA--CGAAAACCC--------U-AAGGCAAC |||| || ||||| | |||:|||| AGCTGGGC-CTTGGGCCCTCACCATTTCTGTTG Vcp rno-miR-194 140 161 aggUGUACCUCAACGACAAUGU ||| ||: || |||||:|| tggACAGGGGTTTTCTGTTGCA Vcp rno-miR-204 383 403 uCCGUAUCCUACUGUUUCCCuu || :|||| |||||:||| tGG-GTAGGTGGACAAGGGGcc Vcp rno-miR-207 196 216 uucccuccuCUCGGUCCUCUUCg |:| ||| |||| ttttcatttGGG--AGGTGAAGa Vcp rno-miR-20a* 264 283 ACAUUCACGAGCAUUACGUCa ||| ||| : ||::||||| TGT-AGTTTGGGTGGTGCAGg Vcp rno-miR-211 384 403 uCCGUUUCCUACUGUUUCCCuu ||: ||| |||||:||| gGGT--AGGTGGACAAGGGGcc Vcp rno-miR-212 26 45 CCGGCACUGACCUCUG--ACAAu |||| ||:||| ||| |||| GGCC-TGGCTG--GACCTTGTTc Vcp rno-miR-214 17 36 GACGGACAGACACGGA-CGACa | || | ||| |||| |||| CAGCGAG-CTG-GCCTGGCTGg Vcp rno-miR-23b 282 301 CCAUUAGGGAC-CGUUACACUa ||||| |||| |:::||||| GGTAA--CCTGTGTGGTGTGAa Vcp rno-miR-24 220 243 gacAAGGACG--ACUUGACUCGGu | || || ||:|||:||| aatTACCAGCAAGGAGCTGGGCCt Vcp rno-miR-28 344 364 GAGUUAUCUGACA--CUCGAGGAa |||||| :|||| ||| ||| CTCAAT--GCTGTCCAAGC-CCTc Vcp rno-miR-290 240 274 uuuuuCACGGG---GGU---------AUCAAACUC | |||| ||| |||||||:| gccttGGGCCCTCACCATTTCTGTTGTAGTTTGGG Vcp rno-miR-292-5p 393 414 gUUUUCUCGGGGGUCAAACuca | |||:| ||:||||||| gACAAGGGGCCTCAGTTTGctg Vcp rno-miR-296 225 251 uGUCCUAACU---CCC---CCCCGGGA ||| | || ||| ||||||| cCAGCAAGGAGCTGGGCCTTGGGCCCT Vcp rno-miR-299 281 304 UACAU---ACACCCUGCCAUUUGGu | ||| |||| |:: ||:|||| AGGTAACCTGTGTGGT-GTGAACCg Vcp rno-miR-29a 262 282 uuggcUAAAGUCUACCACGau | ||::|:|||||| gttgtAGTTTGGGTGGTGCag Vcp rno-miR-29b 259 282 uugugAC-UAAAGUUUACCACGau || | ||::::|||||| tctgtTGTAGTTTGGGTGGTGCag Vcp rno-miR-30a-5p 401 424 gaagGUC-AGC-UCCUACAAAUGU ||| |:| ||:||||||:| gcctCAGTTTGCTGGGTGTTTATA Vcp rno-miR-30b 401 424 ucGACUCACAU--CCUACAAAUGU || ||| |: ||:||||||:| gcCTCAGTTTGCTGGGTGTTTATA Vcp rno-miR-30c 402 424 cGACUCUCACAUCCUACAAAUGU || || || ||:||||||:| cCTCAGTTTGCTGGGTGTTTATA Vcp rno-miR-31 10 30 GUCGAUACGGUCG-UAGAACGGA |||| ||| |||| | || |||| CAGC-ATG-CAGCGAGCTGGCCT Vcp rno-miR-320 360 385 aaGCGGGA---GAGUUGGGUCGAAaa | |||| ||| | ||||| | ccCTCCCTTACCTCTAGCCAGCCTgg Vcp rno-miR-323 279 300 ucUCCAGCUGGCACAUUACACg |||| |:||||::|||| gcAGGTAACCTGTGTGGTGTGa Vcp rno-miR-324-3p 373 393 GGUCGUCGU-GGACCCCGU-CACC |:||| || ||| |||:| |||| CTAGC--CAGCCT-GGGTAGGTGG Vcp rno-miR-324-5p 37 57 UGUGGUUACGGGAUCCCCUACgc || |: :| |||| ||||:|| AC-CTTGTTCCCT-GGGGGTGgg Vcp rno-miR-326 32 52 uGACCUCCUUCCCGGGUCUCC ||||| | ||| |:|| gCTGGACCTTGTTCCCTGGGG Vcp rno-miR-329 401 422 uuuuucCAAUCGACCCACACAa ||| ||||||||| | gcctcaGTTTGCTGGGTGTTTa Vcp rno-miR-331 63 84 aagauccUAUCC-GGGUCCCCg ||:|| ||||||| tcgcccaATGGGAACCAGGGGt Vcp rno-miR-331 380 402 aaGAUCCUAUCCG---GGUCCCCG || ||:||||: | |||||| gcCT-GGGTAGGTGGACAAGGGGC Vcp rno-miR-336 379 403 UCUGAUCUAU--ACC--UUCCCacu || ||:|:|| ||| ||||| AGCCTGGGTAGGTGGACAAGGGgcc Vcp rno-miR-337 214 240 UUUC-CGUA---GUAUAUCCUCGACuu |:|| | || || |||||||| AGAGTGAATTACCAGCAAGGAGCTGgg Vcp rno-miR-337 189 214 UUUCCGU---AGUAUAUCCUCGACUU |||| | |||| |:|||| |||| AAAGTGATTTTCATTTGGGAGGTGAA Vcp rno-miR-339 122 149 ACUCGAGGAC---CU----CCUGUCCCu | ||| || | || |||||||| TCAGCCCCAGTCAGACTCTGGACAGGGg Vcp rno-miR-339 58 83 aCUCGA---GGACCUCCU--GUCCCu | ||| || :||| ||||| gGCGCTCGCCCAATGGGAACCAGGGg Vcp rno-miR-339 39 59 acuCGAGGACCUCCUGUCCCu |:||| |:||:::||| cttGTTCCCTGGGGGTGGGGg Vcp rno-miR-342 272 297 cugcCCACG-CUA-AAGACACACucu ||||| |:| ||||||| gggtGGTGCAGGTAACCTGTGTGgtg Vcp rno-miR-344 19 40 uGCCAGUCCGAAACCGAUCUAGu || | ||| |||||:|| | gCGAGCTGGC-CTGGCTGGACCt Vcp rno-miR-349 206 238 uCUCCAAUUCU---------GUCG-UCC-CGAC ||||| |||| |||| ||| |||| gGAGGTGAAGAGTGAATTACCAGCAAGGAGCTG Vcp rno-miR-34a 297 315 uugUUGGUCGAUUCUGUGACGGu |||| :||:|:||||| gtgAACC----GAGGCGCTGCCc Vcp rno-miR-34c 290 315 cguuaguCGAUUG---AUGUGACGGa |: ||| :|:||||| gtgtggtGTGAACCGAGGCGCTGCCc Vcp rno-miR-351 387 410 gUCCG--AGUUUCCCGAGGAGUCccu |||: |||:||| |||||| tAGGTGGACAAGGGG--CCTCAGttt Vcp rno-miR-383 124 145 UCGGUGUCAGUGGAAGACUAGa |||| |||||| ||||: | AGCCCCAGTCAGACTCTGGACa Vcp rno-miR-409-5p 270 289 guuuCAACGAGCCCAUUGGA || |: | |||||||| ttggGTGGTGCAGGTAACCT Vcp rno-miR-412 196 216 ugccgaucACCUGGUCCACUUCa |||: |||||||| ttttcattTGGG--AGGTGAAGa Vcp rno-miR-412 29 59 ugCCGAUC----ACCUGG----UCCACUUCa ||||:| || || :||||::| ctGGCTGGACCTTGTTCCCTGGGGGTGGGGg Vcp rno-miR-422b 100 126 cGG-AA-GACUGAGGU---UCAGGUCa || || || | |||: |||:||| tCCATTCCTCAGTCCGAACAGTTCAGc Vcp rno-miR-431 18 39 aCGUACUGCCGGA-CGUUCUGu ||: | :||||| || :||| aGCGAGCTGGCCTGGCTGGACc Vcp rno-miR-483 198 220 uguucugCCCUCCCCUCCUCACU |||||| || |||||| ttcatttGGGAGGTGAAGAGTGA Vcp rno-miR-493 24 43 GACCGUGUGUCAUCUGGAAgu ||||| | : |:|||||| CTGGC-CTGGCTGGACCTTgt Vcp rno-miR-503 290 315 guCAUGACA--AGG----GCGACGau ||: ||| || |||||| gtGTGGTGTGAACCGAGGCGCTGCcc Vcp rno-miR-331 77 84 AA---GAUCCUA---UCCG----------------GGUCCCCG ||:||: :||| |||||||: GUUCCCUGGGGGUGGGGGCGCUCGCCCAAUGGGAACCAGGGGUG Vcp rno-miR-339 142 149 AC-------------------------UC-GAGGACCUCCUGUCCCU || |||: ||||||||: CUCAGUCCGAACAGUUCAGCCCCAGUCAGACUCU----GGACAGGGGU Vcp rno-miR-409-5p 282 289 GU-----------------------UUCAACGAGCCCAUUGGA ::|| |: | |||||||| GCCCUCACCAUUUCUGUUGUAGUUUGGGUGGUGCAGGUAACCUG Vcp rno-miR-412 209 216 UGCCGAUC----------------------ACCUGGUCCACUUCA |||: |||||||| AAAAGCGAUAAAAUAAAAGUGAUUUUCAUUUGGG--AGGUGAAGA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Vcp RAID00077386 rno-miR-129-5p miRNA MIMAT0000600 Vcp mRNA 116643 Prediction 0.2202 Vcp RAID00084455 rno-miR-3586-5p miRNA MIMAT0017880 Vcp mRNA 116643 Prediction 0.1828 Vcp RAID00100337 rno-miR-150-5p miRNA MIMAT0000853 Vcp mRNA 116643 Prediction 0.1828 Vcp RAID00523924 rno-miR-451-3p miRNA MIMAT0017193 Vcp mRNA 116643 Prediction 0.1828 Vcp RAID00762729 rno-miR-9a-5p miRNA MIMAT0000781 Vcp mRNA 116643 Prediction 0.1828 Vcp RAID01735651 rno-miR-21-5p miRNA MIMAT0000790 Vcp mRNA 116643 Prediction 0.1828 Vcp RAID02639165 rno-miR-135b-5p miRNA MIMAT0000611 Vcp mRNA 116643 Prediction 0.1828 Vcp RAID02938209 rno-miR-187-3p miRNA MIMAT0000864 Vcp mRNA 116643 Prediction 0.1828 Vcp RAID02958070 rno-miR-135a-5p miRNA MIMAT0000841 Vcp mRNA 116643 Prediction 0.1828 Vcp RAID03267744 rno-miR-339-5p miRNA MIMAT0000583 Vcp mRNA 116643 Prediction 0.2202 Vcp RAID03557990 rno-miR-1306-5p miRNA MIMAT0024851 Vcp mRNA 116643 Prediction 0.1828 Vcp RAID03646377 rno-miR-190a-3p miRNA MIMAT0017145 Vcp mRNA 116643 Prediction 0.1828 Vcp RAID03762273 rno-miR-137-3p miRNA MIMAT0000843 Vcp mRNA 116643 Prediction 0.1828