DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 31118 dor auaGUAAAGUAUACGUUGCAUUUAUgu :|||| ||| :| |||||| aagUAUUUAUUAU-UA---UAAAUAaa 3 25 45 67 [dm3:X:1562448-1562470:+] 0.5604 130 0 -7.47 -0.1800 MIMAT0000364 dme-miR-289 31118 dor ucagcgucCGAG-GUGAAUUUAUAAAu |:|| || |||||||| ccaccgucGUUCAGACCCAAAUAUUUa 2 19 8 34 [dm3:X:1562411-1562437:+] 0.6010 153 7 -15.55 -1.3236 MIMAT0000364 dme-miR-289 31118 dor ucagcguccgAGGUG-AAUUUAUAAAu | ||: | ||:||||| aauauuuaugUACAUAUAAAGUAUUUa 2 17 27 53 [dm3:X:1562430-1562456:+] 0.5807 135 0 -8.63 -0.2182 MIMAT0000388 dme-miR-303 31118 dor uggucaaaggacacUUUGGAUuu ||||||| uuauuauuauaaauAAACCUAca 3 10 51 73 [dm3:X:1562454-1562476:+] 0.5637 125 0 -8.67 -0.3499 MIMAT0005473 dme-miR-959 31118 dor aagUAUUAUGGG---GGCUACUGUu |||| |||: |:||| ||| uaaAUAA-ACCUACACUGAUCACAa 2 20 60 83 [dm3:X:1562463-1562486:+] 0.5637 124 0 -12.99 -0.2698 MIMAT0005475 dme-miR-961 31118 dor uagagucaaugaccACUAGUuu |||||| aaauaaaccuacacUGAUCAca 3 9 61 82 [dm3:X:1562464-1562485:+] 0.5637 120 0 -5.21 -0.1849 MIMAT0005502 dme-miR-985 31118 dor acgggcugguaaccUUGUAAAc ||:|||| gucguucagacccaAAUAUUUa 2 9 13 34 [dm3:X:1562416-1562437:+] 0.6010 124 0 -10.71 -0.1223 MIMAT0011784 dme-miR-2279* 31118 dor uuaAAGUGUGUGUCUAUAAAUu |||| || || ||||||| ucgUUCAGACCCAAAUAUUUAu 2 20 14 35 [dm3:X:1562417-1562438:+] 0.6010 171 7 -11.26 -1.2691 MIMAT0011784 dme-miR-2279* 31118 dor uuaAAGUGUGUG-UCUAUAAAUu | :|||:|: | :|||||| uuaUGUACAUAUAAAGUAUUUAu 2 20 32 54 [dm3:X:1562435-1562457:+] 0.5807 142 6 -10.48 -0.4731 MIMAT0011791 dme-miR-2283 31118 dor uaacAGCAUAAGUACUAUAAAag || | || |||||| ucguUCAGACCCA-AAUAUUUau 3 20 14 35 [dm3:X:1562417-1562438:+] 0.6010 121 0 -4.37 -0.2153 MIMAT0000113 dme-miR-8 31118 dor cuguAGAAAUGGA-CUGUCAUAAu | | ||| | | |||||| uauuUAUGUACAUAUAAAGUAUUu 2 20 29 52 [dm3:X:1562432-1562455:+] 0.5807 122 6 -7.92 -0.2810 MIMAT0000332 dme-miR-274 31118 dor uaaugggcaaucacaGCCAGUGUUUu :| ||||||| uaaauaaaccuacacUGAUCACAAA- 2 12 60 84 [dm3:X:1562463-1562487:+] 0.5637 143 7 -9.30 -1.0860 MIMAT0000347 dme-miR-283 31118 dor ucuuaauggucgacUAUAAAu |||||| ucguucagacccaaAUAUUUa 2 8 14 34 [dm3:X:1562417-1562437:+] 0.6010 120 6 -6.74 -0.4554 MIMAT0005467 dme-miR-190 31118 dor guUGGUUCUUAUAGUU---UGUAUAga ||| | |||||: | |||||| agACCCA-AAUAUUUAUGUACAUAUaa 3 23 20 45 [dm3:X:1562423-1562448:+] 0.5807 139 0 -10.30 -0.1826 MIMAT0005516 dme-miR-252 31118 dor gaggacgccgugaUCAUGAAUc ||||:||| uauguacauauaaAGUAUUUAu 2 10 33 54 [dm3:X:1562436-1562457:+] 0.5807 129 0 -6.54 -0.1487

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score dor RAID01134174 dme-miR-274-5p miRNA MIMAT0000332 dor mRNA 31118 Prediction 0.2202 dor RAID01609402 dme-miR-8-3p miRNA MIMAT0000113 dor mRNA 31118 Prediction 0.1828 dor RAID01847038 dme-miR-190-5p miRNA MIMAT0005467 dor mRNA 31118 Prediction 0.1828 dor RAID01900601 dme-miR-283-5p miRNA MIMAT0000347 dor mRNA 31118 Prediction 0.1828 dor RAID02523246 dme-miR-252-5p miRNA MIMAT0005516 dor mRNA 31118 Prediction 0.1828 dor RAID02858492 dme-miR-1-3p miRNA MIMAT0000105 dor mRNA 31118 Prediction 0.1828 dor RAID02896612 dme-miR-303-5p miRNA MIMAT0000388 dor mRNA 31118 Prediction 0.1828