DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 35084 kel uggUCAUGGACUACAUUAUGAGu || :| | || ||||||| acaAGCGCAU-AUACAAUACUCc 2 21 796 817 [dm3:2L:18129957-18129978:-] 0.5548 150 7 -8.97 -0.4716 MIMAT0000117 dme-miR-12 35084 kel uggUCAUGGACUACAUUAUGAGu || :| | || ||||||| acaAGCGCAU-AUACAAUACUCc 2 21 3160 3181 [dm3:2L:18129957-18129978:-] 0.5548 150 7 -8.97 -0.1375 MIMAT0000330 dme-miR-184* 35084 kel gccccgcucucuuACUAUUCc ||||||| uugucuaaaucgcUGAUAAGu 2 9 1345 1365 [dm3:2L:18129409-18129429:-] 0.5642 140 7 -5.96 -0.3552 MIMAT0000343 dme-miR-280 35084 kel auAGUA-AAGUAUACGUUGCAUUUAUGu |||| | || | :| ||||||: guUCAUAUACACAGAUACAUUAAAUAUc 2 26 987 1014 [dm3:2L:18129760-18129787:-] 0.6126 140 0 -10.39 -0.1043 MIMAT0000343 dme-miR-280 35084 kel auagUAAAGUAUACGU-UGCAUU-UAUGu || |||| :: ||||| |||| aaaaAUACAAUAUCUGUUCGUAAUAUACu 2 24 1029 1057 [dm3:2L:18129717-18129745:-] 0.4941 122 0 -10.21 -0.3290 MIMAT0000343 dme-miR-280 35084 kel auaguaaaguauacguugcaUUUAUGu |||||| uaucaauaccguaaauuaaaAAAUACa 2 8 1011 1037 [dm3:2L:18129737-18129763:-] 0.5534 120 6 -9.96 -0.2754 MIMAT0000344 dme-miR-281-1* 35084 kel ugACAGCUGC-CUGUCGA-GAGAa ||||| :| :| ||| |||| guUGUCGCUGCUGCUGCUGCUCUu 2 21 1395 1418 [dm3:2L:18129356-18129379:-] 0.5642 123 0 -20.89 -0.3128 MIMAT0000364 dme-miR-289 35084 kel ucAGCGUCCGAGGUGAAUUUAUAAAu |||: ||| :|||||||||| acUCGUUUACUC--UUUAAAUAUUUg 2 25 1279 1302 [dm3:2L:18129472-18129495:-] 0.5642 165 7 -15.71 -0.8624 MIMAT0000364 dme-miR-289 35084 kel ucagcGUC-CGAGGUGAA-UUUAUAAAu ||| |:| :| || |||||||| uagauCAGCGUUGUAGUUAAAAUAUUUa 2 22 27 54 [dm3:2L:18130720-18130747:-] 0.4712 163 7 -15.10 -1.0503 MIMAT0000364 dme-miR-289 35084 kel ucagcguccgaggUGAAUUUAUAAAu || ||||||| gcuuuaaaccggaACAAUAAUAUUUa 2 14 683 708 [dm3:2L:18130066-18130091:-] 0.5548 141 7 -9.39 -0.9621 MIMAT0000364 dme-miR-289 35084 kel ucAGCGUCCGAGGUGAAUUUAUAAAu |||: ||| :|||||||||| acUCGUUUACUC--UUUAAAUAUUUg 2 25 3643 3666 [dm3:2L:18129472-18129495:-] 0.5642 165 7 -15.71 -0.3638 MIMAT0000364 dme-miR-289 35084 kel ucagcGUC-CGAGGUGAA-UUUAUAAAu ||| |:| :| || |||||||| uagauCAGCGUUGUAGUUAAAAUAUUUa 2 22 2391 2418 [dm3:2L:18130720-18130747:-] 0.4712 163 7 -15.10 -0.5025 MIMAT0000364 dme-miR-289 35084 kel ucAGCGUC-CGAGGUGAAUUUAUAAAu |||||| |: : || ||||||| acUCGCAGAGUAUGAC--CAAUAUUUa 2 25 1130 1154 [dm3:2L:18132045-18132069:-] 0.6575 156 7 -16.28 -0.1753 MIMAT0000364 dme-miR-289 35084 kel ucagcguccgaggUGAAUUUAUAAAu || ||||||| gcuuuaaaccggaACAAUAAUAUUUa 2 14 3047 3072 [dm3:2L:18130066-18130091:-] 0.5548 141 7 -9.39 -0.4573 MIMAT0000388 dme-miR-303 35084 kel uggUCAAAGGACACUUUGGAUUu |||| : || ||||||| ucgAGUUAUAGGU--AACCUAAg 2 21 516 536 [dm3:2L:18130238-18130258:-] 0.5548 149 7 -14.49 -0.3295 MIMAT0005465 dme-miR-954 35084 kel uguguGUUGCGUUGU-GGGUCu |||: :||| ||||| cgcgcCAAUUGGACAGCCCAGc 2 17 216 237 [dm3:2L:18133315-18133336:-] 0.6168 120 0 -19.54 -0.1435 MIMAT0005482 dme-miR-967 35084 kel gcgaaGAGGUCU-CCAUAGAGa ||::: | ||||||| ugggaCUUUGAAUCGUAUCUCc 2 17 1524 1545 [dm3:2L:18131654-18131675:-] 0.5690 143 7 -13.68 -0.1753 MIMAT0005488 dme-miR-972 35084 kel cggauUUAUAAG-C-----AUAACAUGu ||||||: | |||||||| acaauAAUAUUUAGCCAACUAUUGUACa 2 18 696 723 [dm3:2L:18130051-18130078:-] 0.5548 147 7 -12.47 -0.8824 MIMAT0005488 dme-miR-972 35084 kel cggauUUAUAAG-C-----AUAACAUGu ||||||: | |||||||| acaauAAUAUUUAGCCAACUAUUGUACa 2 18 3060 3087 [dm3:2L:18130051-18130078:-] 0.5548 147 7 -12.47 -0.3808 MIMAT0005494 dme-miR-978 35084 kel gaCGUUAAAUGCCGUG-ACCUGu || |||| ||||| ||||| ugGC-AUUU--GGCACAUGGACc 2 21 637 656 [dm3:2L:18130118-18130137:-] 0.5548 127 0 -21.18 -0.2196 MIMAT0005495 dme-miR-979 35084 kel aaucggacucAAGCCCUUCUu ||| |||||| ggaauuauuuUUCUGGAAGAu 2 12 906 926 [dm3:2L:18129848-18129868:-] 0.6126 123 6 -9.09 -0.1032 MIMAT0005495 dme-miR-979 35084 kel aaUCGGACUCAAGCC-CUUCUu ||| | | |:|| ||||| agAGCGUAACCUUGGCGAAGAa 2 20 1451 1472 [dm3:2L:18131727-18131748:-] 0.5690 123 0 -14.49 -0.1737 MIMAT0005508 dme-miR-990 35084 kel ccGGUUGAGU-CUUGCCACUUa :|: || | |||||||||| agUCGCCUGAGGAACGGUGAAa 2 20 1843 1864 [dm3:2L:18131274-18131295:-] 0.6646 162 7 -24.30 -0.3944 MIMAT0010206 dme-miR-995* 35084 kel gcgucgaggguguaUUAAGCCc ||||||| gcagaaugguuuugAAUUCGGa 2 9 1938 1959 [dm3:2L:18131179-18131200:-] 0.6646 140 7 -13.71 -0.1703 MIMAT0005022 dme-miR-1009 35084 kel gacuUUACAUUGUUAAAAACUcu | | | |:| ||||||| guauAUUUUUAUAUUUUUUGAaa 3 20 1215 1237 [dm3:2L:18129537-18129559:-] 0.5642 139 0 -3.91 -0.2545 MIMAT0005026 dme-miR-1013 35084 kel gcucaaGCCGUAUGAAAAUa | | : ||||||| cagggaCAGAGAACUUUUAc 2 15 238 257 [dm3:2L:18130517-18130536:-] 0.4554 142 7 -6.64 -0.1572 MIMAT0005028 dme-miR-1015 35084 kel gaCGUUCU-CUCUACAG-GGUCCu |:|||| ||||| ||||| uuGUAAGAUUUUAUGUCUCCAGGg 2 21 219 242 [dm3:2L:18130532-18130555:-] 0.4674 127 0 -25.89 -0.4347 MIMAT0005028 dme-miR-1015 35084 kel gaCGUUCU-CUCUACAG-GGUCCu |:|||| ||||| ||||| uuGUAAGAUUUUAUGUCUCCAGGg 2 21 2583 2606 [dm3:2L:18130532-18130555:-] 0.4674 127 0 -25.89 -0.1150 MIMAT0011784 dme-miR-2279* 35084 kel uuaaagUGUGUGUCUAUAAAUu ||| |:| ||||||| accggaACA-AUA-AUAUUUAg 2 17 690 709 [dm3:2L:18130065-18130084:-] 0.5548 148 7 -8.37 -0.3791 MIMAT0011784 dme-miR-2279* 35084 kel uuAAAGUGUGUGUCUAUAAAUu || :| :| | ||||||| cgUUGUAGUUA-AAAUAUUUAa 2 21 35 55 [dm3:2L:18130719-18130739:-] 0.4712 146 7 -4.04 -1.0470 MIMAT0011784 dme-miR-2279* 35084 kel uuaaagugugugucUAUAAAUu ||||||| guaagcuggguuuuAUAUUUAu 2 9 120 141 [dm3:2L:18130633-18130654:-] 0.4674 140 7 -4.32 -0.6635 MIMAT0011784 dme-miR-2279* 35084 kel uuaaagUGUGUGUCUAUAAAUu ||| |:| ||||||| accggaACA-AUA-AUAUUUAg 2 17 3054 3073 [dm3:2L:18130065-18130084:-] 0.5548 148 7 -8.37 -0.1028 MIMAT0011784 dme-miR-2279* 35084 kel uuAAAGUGUGUGUCUAUAAAUu || :| :| | ||||||| cgUUGUAGUUA-AAAUAUUUAa 2 21 2399 2419 [dm3:2L:18130719-18130739:-] 0.4712 146 7 -4.04 -0.4833 MIMAT0011784 dme-miR-2279* 35084 kel uuaaagugugUGUCUAUAAAUu || ||||||| gcagaguaugACCAAUAUUUAc 2 13 1134 1155 [dm3:2L:18132044-18132065:-] 0.6575 144 7 -4.31 -0.1918 MIMAT0011784 dme-miR-2279* 35084 kel uuaaagugugugucUAUAAAUu ||||||| guaagcuggguuuuAUAUUUAu 2 9 2484 2505 [dm3:2L:18130633-18130654:-] 0.4674 140 7 -4.32 -0.2112 MIMAT0011787 dme-miR-2280* 35084 kel agucaaucgaaccuuCAUUUAa |||||| uuaaauaucaauaccGUAAAUu 2 8 1006 1027 [dm3:2L:18129747-18129768:-] 0.5534 120 6 -3.25 -0.1302 MIMAT0011788 dme-miR-2281* 35084 kel aacGUAGACGUCGACGUCUAUua ||| | || |||||| guuCAUAUACA----CAGAUAca 3 21 987 1005 [dm3:2L:18129769-18129787:-] 0.6126 123 0 -9.31 -0.2243 MIMAT0011789 dme-miR-2281 35084 kel cguuaugacgucuaUGUCUAu |||||| uguuguucauauacACAGAUa 2 8 983 1003 [dm3:2L:18129771-18129791:-] 0.6126 120 6 -9.65 -0.1951 MIMAT0011791 dme-miR-2283 35084 kel uaacAGCAUAAGUACUAUAAAAg | |||| |:| ||||||| ugcaUAGUAUACGU-AUAUUUUu 2 20 1203 1224 [dm3:2L:18129550-18129571:-] 0.5642 161 7 -9.34 -0.9851 MIMAT0011791 dme-miR-2283 35084 kel uaacagcauaaguacuAUAAAAg |||||| ggaagauuuuuguuuuUAUUUUa 2 8 920 942 [dm3:2L:18129832-18129854:-] 0.6126 120 6 -4.13 -0.2376 MIMAT0011791 dme-miR-2283 35084 kel uaacAGCAUAAGUACUAUAAAAg | |||| |:| ||||||| ugcaUAGUAUACGU-AUAUUUUu 2 20 3567 3588 [dm3:2L:18129550-18129571:-] 0.5642 161 7 -9.34 -0.4834 MIMAT0012196 dme-miR-2489 35084 kel ugaCGUUU-AUGUUGUAUGUUAu |:||| || || ||||||| accGUAAAUUAAAAAAUACAAUa 2 20 1018 1040 [dm3:2L:18129734-18129756:-] 0.5534 166 7 -12.19 -1.2362 MIMAT0012196 dme-miR-2489 35084 kel ugACGUUUAUGUUGUAUGUUAu | |||: :| |:||||||| uaUACAAGCGC-AUAUACAAUa 2 21 793 813 [dm3:2L:18129961-18129981:-] 0.5548 158 7 -15.11 -1.0356 MIMAT0012196 dme-miR-2489 35084 kel ugaCGUUU-AUGUUGUAUGUUAu |:||| || || ||||||| accGUAAAUUAAAAAAUACAAUa 2 20 3382 3404 [dm3:2L:18129734-18129756:-] 0.5534 166 7 -12.19 -0.9107 MIMAT0012196 dme-miR-2489 35084 kel ugACGUUUAUGUUGUAUGUUAu | |||: :| |:||||||| uaUACAAGCGC-AUAUACAAUa 2 21 3157 3177 [dm3:2L:18129961-18129981:-] 0.5548 158 7 -15.11 -0.5448 MIMAT0012198 dme-miR-2491 35084 kel ucGUUGACGUUUCCGUUGUCGc |||| ||| ||||||| caCAACAACAACAACAACAGCa 2 21 404 425 [dm3:2L:18133127-18133148:-] 0.6168 160 7 -16.92 -0.5447 MIMAT0012198 dme-miR-2491 35084 kel ucGUUGACGUUUCCGUUGUCGc ||| ||| ||||||| ucCAA--GCACUACCAACAGCa 2 21 2319 2338 [dm3:2L:18130800-18130819:-] 0.6646 145 7 -12.50 -0.5295 MIMAT0012199 dme-miR-2492 35084 kel aaacuuUCGAGAGCUGUUUUGUa :| ||| ||||||| aaaauuGGAUCU---CAAAACAa 2 18 291 310 [dm3:2L:18130464-18130483:-] 0.4756 141 7 -8.92 -0.7962 MIMAT0012199 dme-miR-2492 35084 kel aaaCU-UUCGAGAGCUGUUUUGUa || || | | ||||||| ugaGACAACCAGCAGUCAAAACAa 2 21 2292 2315 [dm3:2L:18130823-18130846:-] 0.6646 143 7 -8.10 -0.3780 MIMAT0012199 dme-miR-2492 35084 kel aaacuuUCGAGAGCUGUUUUGUa :| ||| ||||||| aaaauuGGAUCU---CAAAACAa 2 18 2655 2674 [dm3:2L:18130464-18130483:-] 0.4756 141 7 -8.92 -0.2969 MIMAT0012199 dme-miR-2492 35084 kel aaaCUUUCGAG-AGCUGUU-UUGUa || ||| | | |||| |||| uugGACAGCCCAGCAACAACAACAa 2 21 224 248 [dm3:2L:18133304-18133328:-] 0.6168 123 0 -9.53 -0.1991 MIMAT0012199 dme-miR-2492 35084 kel aaaCUUUCGAG-AGCUGUU-UUGUa |:|| :|| | |||| |||| cgaGGAAAUUCAGCAACAACAACAa 2 21 312 336 [dm3:2L:18133216-18133240:-] 0.6168 123 0 -9.85 -0.1197 MIMAT0012202 dme-miR-2494* 35084 kel aaggguuagaccacGUGAAUg |||||| aucaaaaagauauaCACUUAa 2 8 370 390 [dm3:2L:18130384-18130404:-] 0.4756 120 6 -9.78 -0.1647 MIMAT0012213 dme-miR-2499 35084 kel augccugcacuuacAGUAGGCGUa | ||||||| ccuaaugccaacaaUAAUCCGCAa 2 11 352 375 [dm3:2L:18133177-18133200:-] 0.6168 142 7 -12.59 -0.3611 MIMAT0012214 dme-miR-2500* 35084 kel ccaUAACAUAUACACACAAGG-AAUg ||| ||||| ||||| ||| ugcAUUUGAUAUGAUAGUUCCAUUAu 2 23 577 602 [dm3:2L:18130172-18130197:-] 0.5548 134 0 -12.85 -0.8511 MIMAT0012214 dme-miR-2500* 35084 kel ccaUAACAUAUACACACAAGG-AAUg ||| ||||| ||||| ||| ugcAUUUGAUAUGAUAGUUCCAUUAu 2 23 2941 2966 [dm3:2L:18130172-18130197:-] 0.5548 134 0 -12.85 -0.3494 MIMAT0012215 dme-miR-2500 35084 kel gacuccaggugugugUUUUAGg |||||| uauaaauucauuuuaAAAAUCa 2 8 352 373 [dm3:2L:18130401-18130422:-] 0.4756 120 6 -8.46 -0.2091 MIMAT0012216 dme-miR-2501 35084 kel aaucggGUCCGUGAGGUUUGAAUg || | ||| |||||||| ucccuaCAAGAACUACAAACUUAa 2 19 2127 2150 [dm3:2L:18130988-18131011:-] 0.6646 166 7 -16.70 -0.4003 MIMAT0000115 dme-miR-10-5p 35084 kel uuguUUAAGCCUAGAUGUCCca |||| || :|||||| agucAAUU-AGAGUUACAGGua 3 19 751 771 [dm3:2L:18130003-18130023:-] 0.5548 136 0 -11.36 -0.1240 MIMAT0000319 dme-miR-263a 35084 kel cacuuaagaaggucacgGUAAUUg |||||| guucauauacacagauaCAUUAAa 2 8 987 1010 [dm3:2L:18129764-18129787:-] 0.6126 120 6 -8.94 -0.2220 MIMAT0000338 dme-miR-277 35084 kel acagcaUGGUCUAUCACGUAAAu | || ||| ||||||| acuuuaAGCA-AUA-UGCAUUUg 2 18 564 584 [dm3:2L:18130190-18130210:-] 0.5548 149 7 -9.30 -0.8076 MIMAT0000338 dme-miR-277 35084 kel acagcaUGGUCUAUCACGUAAAu | || ||| ||||||| acuuuaAGCA-AUA-UGCAUUUg 2 18 2928 2948 [dm3:2L:18130190-18130210:-] 0.5548 149 7 -9.30 -0.3152 MIMAT0000348 dme-miR-284 35084 kel guuaacgacCUUAGUUCAACGAC-UGAAGu |||||:| || ||||| aagcauaacGAAUCGACCAAAUGAACUUCg 2 21 314 343 [dm3:2L:18130431-18130460:-] 0.4756 120 0 -15.57 -0.7031 MIMAT0000348 dme-miR-284 35084 kel guuaacgacCUUA-GUU-CAACGACUGAAGu || | ||| || :||||||| cagggacccGAUUGCAAGGUAAUUGACUUCa 2 21 1600 1630 [dm3:2L:18131508-18131520,18131582-18131599:-] 0.6168 154 7 -22.18 -0.5703 MIMAT0000348 dme-miR-284 35084 kel guuaacgacCUUAGUUCAACGAC-UGAAGu |||||:| || ||||| aagcauaacGAAUCGACCAAAUGAACUUCg 2 21 2678 2707 [dm3:2L:18130431-18130460:-] 0.4756 120 0 -15.57 -0.2390 MIMAT0000350 dme-miR-34 35084 kel guGUUGGUCGAUUGGUGUGACGGu | |::| :| :: ||||||| uuCCAUUAUUU--UUCCACUGCCu 2 23 594 615 [dm3:2L:18130159-18130180:-] 0.5548 143 7 -17.70 -0.7634 MIMAT0000350 dme-miR-34 35084 kel guGUUGGUCGAUUGGUGUGACGGu | |::| :| :: ||||||| uuCCAUUAUUU--UUCCACUGCCu 2 23 2958 2979 [dm3:2L:18130159-18130180:-] 0.5548 143 7 -17.70 -0.2854 MIMAT0000365 dme-bantam 35084 kel uuaGUCGA-AAGUUUU--ACUAGAGu | ||| | ||||| |||||| acgCUGCUCUACAAAAUUGGAUCUCa 2 21 279 304 [dm3:2L:18130470-18130495:-] 0.4756 130 6 -17.54 -0.1318 MIMAT0000397 dme-miR-125 35084 kel agUGUUCAAUCCCAGA-GUCCCu | :| || |||| ||||| guAAGAUUUUAUGUCUCCAGGGa 2 21 221 243 [dm3:2L:18130531-18130553:-] 0.4554 120 0 -18.03 -0.4464 MIMAT0000397 dme-miR-125 35084 kel agUGUUCAAUCCCAGA-GUCCCu | :| || |||| ||||| guAAGAUUUUAUGUCUCCAGGGa 2 21 2585 2607 [dm3:2L:18130531-18130553:-] 0.4554 120 0 -18.03 -0.1192 MIMAT0000407 dme-miR-315 35084 kel cgaAAGACUCGUUGUUAGUUUu ||| :|| ||||||| aaaUUCAUUUUAAAAAUCAAAa 2 20 355 376 [dm3:2L:18130398-18130419:-] 0.4756 151 7 -7.45 -1.2388 MIMAT0000407 dme-miR-315 35084 kel cgaAAGACUCGUUGUUAGUUUu ||| :|| ||||||| aaaUUCAUUUUAAAAAUCAAAa 2 20 2719 2740 [dm3:2L:18130398-18130419:-] 0.4756 151 7 -7.45 -0.9008 MIMAT0000408 dme-miR-316 35084 kel gcggucauucgccUUUUUCUGu |||||||: cauuuuaaaaaucAAAAAGAUa 2 10 360 381 [dm3:2L:18130393-18130414:-] 0.4756 129 0 -11.25 -0.1354 MIMAT0000412 dme-miR-iab-4-5p 35084 kel aguccUAUGUAAGUCAUAUGCa :|:||| |||||||| cuaauGUGCAU--AGUAUACGu 2 18 1197 1216 [dm3:2L:18129558-18129577:-] 0.5642 154 7 -16.24 -0.9822 MIMAT0000412 dme-miR-iab-4-5p 35084 kel aguccUAUGUAAGUCAUAUGCa :|:||| |||||||| cuaauGUGCAU--AGUAUACGu 2 18 3561 3580 [dm3:2L:18129558-18129577:-] 0.5642 154 7 -16.24 -0.4802 MIMAT0000413 dme-miR-iab-4-3p 35084 kel caAUGCAUAUGA-CUUCCA-UAUGGc ||: ||||:| || || ||||| uaUAUUUAUAUUCAAAAGUGAUACCa 2 23 133 158 [dm3:2L:18130616-18130641:-] 0.4674 133 0 -9.82 -1.0296 MIMAT0000413 dme-miR-iab-4-3p 35084 kel caAUGCAUAUGA-CUUCCA-UAUGGc ||: ||||:| || || ||||| uaUAUUUAUAUUCAAAAGUGAUACCa 2 23 2497 2522 [dm3:2L:18130616-18130641:-] 0.4674 133 0 -9.82 -0.5085 MIMAT0005463 dme-miR-iab-4as-5p 35084 kel gccAUAUGGAAGUCAUAUGCAUu |:|:| | |||||||||| uaaUGUGCAU--AGUAUACGUAu 2 21 1198 1218 [dm3:2L:18129556-18129576:-] 0.5642 161 7 -18.89 -0.9208 MIMAT0005463 dme-miR-iab-4as-5p 35084 kel gcCAUAUGGAAGU-CA---UAUG-CAUu |||||:: |:| || |||| ||| ucGUAUAUUAUUAUGUUGCAUACUGUAg 2 22 455 482 [dm3:2L:18130292-18130319:-] 0.5548 123 0 -11.89 -0.7467 MIMAT0005463 dme-miR-iab-4as-5p 35084 kel gccAUAUGGAAGUCAUAUGCAUu |:|:| | |||||||||| uaaUGUGCAU--AGUAUACGUAu 2 21 3562 3582 [dm3:2L:18129556-18129576:-] 0.5642 161 7 -18.89 -0.4162 MIMAT0005463 dme-miR-iab-4as-5p 35084 kel gcCAUAUGGAAGU-CA---UAUG-CAUu |||||:: |:| || |||| ||| ucGUAUAUUAUUAUGUUGCAUACUGUAg 2 22 2819 2846 [dm3:2L:18130292-18130319:-] 0.5548 123 0 -11.89 -0.2699 MIMAT0005474 dme-miR-960 35084 kel cgaUACGU-UAGACCUUAUGAGu | ||: || | ||||||| uacAAGCGCAUAUACAAUACUCc 2 20 795 817 [dm3:2L:18129957-18129979:-] 0.5548 150 7 -8.82 -0.4683 MIMAT0005474 dme-miR-960 35084 kel cgaUACGU-UAGACCUUAUGAGu | ||: || | ||||||| uacAAGCGCAUAUACAAUACUCc 2 20 3159 3181 [dm3:2L:18129957-18129979:-] 0.5548 150 7 -8.82 -0.1362 MIMAT0005478 dme-miR-964 35084 kel uucaaUUCGAGGG-GAUA-AGAUu || :||:| |||| |||| gcugcAAUUUCUCGCUAUGUCUAc 2 18 1316 1339 [dm3:2L:18129435-18129458:-] 0.5642 124 0 -10.26 -0.5355 MIMAT0005478 dme-miR-964 35084 kel uucaaUUCGAGGG-GAUA-AGAUu || :||:| |||| |||| gcugcAAUUUCUCGCUAUGUCUAc 2 18 3680 3703 [dm3:2L:18129435-18129458:-] 0.5642 124 0 -10.26 -0.1644 MIMAT0005480 dme-miR-965 35084 kel uuccccUUUUCGAUAUG-CGAAu ||| :|:||| |||| acucauAAAUUUUGUACGGCUUu 2 17 79 101 [dm3:2L:18130673-18130695:-] 0.4674 120 0 -9.33 -0.8029 MIMAT0005480 dme-miR-965 35084 kel uuccccUUUUCGAUAUG-CGAAu ||| :|:||| |||| acucauAAAUUUUGUACGGCUUu 2 17 2443 2465 [dm3:2L:18130673-18130695:-] 0.4674 120 0 -9.33 -0.2941 MIMAT0005492 dme-miR-976 35084 kel cguaacuacuauugaUUAGGUu |||||| gaaauuuugcuucuaAAUCCAa 2 8 1234 1255 [dm3:2L:18129519-18129540:-] 0.5642 120 6 -8.35 -0.1532 MIMAT0005497 dme-miR-981 35084 kel acguccaaagcagcuGUUGCUu |||||| cauaauaaaauaguuCAACGAa 2 8 871 892 [dm3:2L:18129882-18129903:-] 0.5837 120 6 -9.21 -0.1463 MIMAT0005501 dme-miR-927 35084 kel ccauuucgcauccuuAAGAUUu |||||| uuuuugaaauuuugcUUCUAAa 2 8 1229 1250 [dm3:2L:18129524-18129545:-] 0.5642 120 6 -4.12 -0.1337 MIMAT0005503 dme-miR-986 35084 kel agucaGUGUUGCG-AUAAGCUCu :|::| || ||||||| acaucUAUGA-GCAGAUUCGAGa 2 18 737 758 [dm3:2L:18132441-18132462:-] 0.6575 142 7 -15.79 -0.1377 MIMAT0005507 dme-miR-137 35084 kel gaugcacauaaGAGUUCGUUAu :|:||||||| uccguaaccacUUUAAGCAAUa 2 12 555 576 [dm3:2L:18130198-18130219:-] 0.5548 147 7 -13.85 -1.1139 MIMAT0005507 dme-miR-137 35084 kel gaugcacAUAA-GAGUUC-GUUAu |||| :|:||| |||| agaauccUAUUGUUUAAGUCAAUu 2 16 735 758 [dm3:2L:18130016-18130039:-] 0.5548 122 0 -8.40 -0.7966 MIMAT0005507 dme-miR-137 35084 kel gaugcacauaaGAGUUCGUUAu :|:||||||| uccguaaccacUUUAAGCAAUa 2 12 2919 2940 [dm3:2L:18130198-18130219:-] 0.5548 147 7 -13.85 -0.6515 MIMAT0005507 dme-miR-137 35084 kel gaugcacAUAA-GAGUUC-GUUAu |||| :|:||| |||| agaauccUAUUGUUUAAGUCAAUu 2 16 3099 3122 [dm3:2L:18130016-18130039:-] 0.5548 122 0 -8.40 -0.3125 MIMAT0005513 dme-miR-994 35084 kel uaGUG-CCGAUGA---UAAAGG-AAUc ||| | ||||| |||||| ||| ucCACUGCCUACUCAAAUUUCCAUUAc 2 21 606 632 [dm3:2L:18130142-18130168:-] 0.5548 130 0 -14.49 -0.3908 MIMAT0005513 dme-miR-994 35084 kel uaGUG-CCGAUGA---UAAAGG-AAUc ||| | ||||| |||||| ||| ucCACUGCCUACUCAAAUUUCCAUUAc 2 21 2970 2996 [dm3:2L:18130142-18130168:-] 0.5548 130 0 -14.49 -0.1057 MIMAT0005518 dme-miR-998 35084 kel cucGACUUAGAGUACCA-CGAu :|||||:| |||| ||| cguUUGAAUUU--UGGUCGCUc 2 19 1091 1110 [dm3:2L:18129664-18129683:-] 0.4941 123 0 -13.31 -0.3503 MIMAT0005519 dme-miR-999 35084 kel ucUGUGU-CAGAAUGUC-AAUUGu ||| | || ||: || ||||| uuACAAAUGUAUUG-AGUUUAACu 2 21 844 866 [dm3:2L:18129908-18129930:-] 0.5548 121 0 -6.16 -0.9355 MIMAT0005519 dme-miR-999 35084 kel ucUGUGU-CAGAAUGUC-AAUUGu ||| | || ||: || ||||| uuACAAAUGUAUUG-AGUUUAACu 2 21 3208 3230 [dm3:2L:18129908-18129930:-] 0.5548 121 0 -6.16 -0.4307 MIMAT0005024 dme-miR-1011 35084 kel gacgcuCG-CUAAACUUGGUUAUu || || | :||||||| gaacucGCAGAGUAUGACCAAUAu 2 18 1128 1151 [dm3:2L:18132048-18132071:-] 0.6575 148 7 -15.16 -0.1504 MIMAT0005027 dme-miR-1014 35084 kel gacguuuACUUUUACUUAAAa || : ||||||| ggauuuuUGCGUUUGAAUUUu 2 15 1082 1102 [dm3:2L:18129672-18129692:-] 0.4941 142 7 -8.57 -0.3280

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score kel RAID00158962 dme-miR-980-3p miRNA MIMAT0005496 kel mRNA 35084 Prediction 0.1828 kel RAID00181565 dme-miR-972-3p miRNA MIMAT0005488 kel mRNA 35084 Prediction 0.1828 kel RAID00278701 dme-miR-991-3p miRNA MIMAT0005509 kel mRNA 35084 Prediction 0.1828 kel RAID00298663 dme-miR-927-5p miRNA MIMAT0005501 kel mRNA 35084 Prediction 0.2202 kel RAID00308381 dme-miR-1015-3p miRNA MIMAT0005028 kel mRNA 35084 Prediction 0.1828 kel RAID00393381 dme-miR-989-3p miRNA MIMAT0005506 kel mRNA 35084 Prediction 0.1828 kel RAID00549129 dme-miR-4-3p miRNA MIMAT0000109 kel mRNA 35084 Prediction 0.1828 kel RAID00642608 dme-miR-976-3p miRNA MIMAT0005492 kel mRNA 35084 Prediction 0.2202 kel RAID00701755 dme-miR-994-5p miRNA MIMAT0005513 kel mRNA 35084 Prediction 0.1828 kel RAID00724841 dme-miR-990-5p miRNA MIMAT0005508 kel mRNA 35084 Prediction 0.1828 kel RAID00740417 dme-miR-1014-3p miRNA MIMAT0005027 kel mRNA 35084 Prediction 0.2202 kel RAID00813602 dme-miR-12-5p miRNA MIMAT0000117 kel mRNA 35084 Prediction 0.1828 kel RAID00857706 dme-miR-125-5p miRNA MIMAT0000397 kel mRNA 35084 Prediction 0.1828 kel RAID00909226 dme-miR-263a-5p miRNA MIMAT0000319 kel mRNA 35084 Prediction 0.2202 kel RAID00922193 dme-miR-284-3p miRNA MIMAT0000348 kel mRNA 35084 Prediction 0.1828 kel RAID01118886 dme-miR-964-5p miRNA MIMAT0005478 kel mRNA 35084 Prediction 0.1828 kel RAID01144553 dme-miR-1013-3p miRNA MIMAT0005026 kel mRNA 35084 Prediction 0.1828 kel RAID01158688 dme-miR-1005-3p miRNA MIMAT0005018 kel mRNA 35084 Prediction 0.1828 kel RAID01291117 dme-miR-190-5p miRNA MIMAT0005467 kel mRNA 35084 Prediction 0.1828 kel RAID01327938 dme-bantam-3p miRNA MIMAT0000365 kel mRNA 35084 Prediction 0.2202 kel RAID01351890 dme-miR-283-5p miRNA MIMAT0000347 kel mRNA 35084 Prediction 0.1828 kel RAID01416983 dme-miR-316-5p miRNA MIMAT0000408 kel mRNA 35084 Prediction 0.1828 kel RAID01469449 dme-miR-7-5p miRNA MIMAT0000112 kel mRNA 35084 Prediction 0.1828 kel RAID01499274 dme-miR-974-5p miRNA MIMAT0005490 kel mRNA 35084 Prediction 0.1828 kel RAID01578818 dme-miR-967-5p miRNA MIMAT0005482 kel mRNA 35084 Prediction 0.1828 kel RAID01654175 dme-miR-10-5p miRNA MIMAT0000115 kel mRNA 35084 Prediction 0.1828 kel RAID01669557 dme-miR-14-3p miRNA MIMAT0000120 kel mRNA 35084 Prediction 0.2381 kel RAID01695774 dme-miR-986-5p miRNA MIMAT0005503 kel mRNA 35084 Prediction 0.2202 kel RAID01737662 dme-miR-1000-5p miRNA MIMAT0005520 kel mRNA 35084 Prediction 0.1828 kel RAID01820446 dme-miR-124-3p miRNA MIMAT0000351 kel mRNA 35084 Prediction 0.1828 kel RAID01837597 dme-miR-315-5p miRNA MIMAT0000407 kel mRNA 35084 Prediction 0.2202 kel RAID01880389 dme-miR-929-3p miRNA MIMAT0005511 kel mRNA 35084 Prediction 0.1828 kel RAID01931273 dme-miR-277-3p miRNA MIMAT0000338 kel mRNA 35084 Prediction 0.2381 kel RAID01988676 dme-miR-1011-3p miRNA MIMAT0005024 kel mRNA 35084 Prediction 0.2202 kel RAID02207268 dme-miR-999-3p miRNA MIMAT0005519 kel mRNA 35084 Prediction 0.1828 kel RAID02408698 dme-miR-965-3p miRNA MIMAT0005480 kel mRNA 35084 Prediction 0.2202 kel RAID02425400 dme-miR-1010-3p miRNA MIMAT0005023 kel mRNA 35084 Prediction 0.1828 kel RAID02611748 dme-miR-998-3p miRNA MIMAT0005518 kel mRNA 35084 Prediction 0.1828 kel RAID02779817 dme-miR-iab-8-5p miRNA MIMAT0005463 kel mRNA 35084 Prediction 0.1828 kel RAID02799301 dme-miR-960-5p miRNA MIMAT0005474 kel mRNA 35084 Prediction 0.2381 kel RAID02893238 dme-miR-34-5p miRNA MIMAT0000350 kel mRNA 35084 Prediction 0.2381 kel RAID02998535 dme-miR-955-5p miRNA MIMAT0005466 kel mRNA 35084 Prediction 0.1828 kel RAID03095366 dme-miR-iab-4-3p miRNA MIMAT0000413 kel mRNA 35084 Prediction 0.1828 kel RAID03406617 dme-miR-137-3p miRNA MIMAT0005507 kel mRNA 35084 Prediction 0.2202 kel RAID03409109 dme-miR-932-5p miRNA MIMAT0005479 kel mRNA 35084 Prediction 0.1828 kel RAID03417705 dme-miR-276a-3p miRNA MIMAT0000337 kel mRNA 35084 Prediction 0.1828 kel RAID03486186 dme-miR-979-3p miRNA MIMAT0005495 kel mRNA 35084 Prediction 0.1828 kel RAID03574694 dme-miR-iab-4-5p miRNA MIMAT0000412 kel mRNA 35084 Prediction 0.1828 kel RAID03787564 dme-miR-276b-3p miRNA MIMAT0000354 kel mRNA 35084 Prediction 0.1828 kel RAID03818675 dme-miR-981-3p miRNA MIMAT0005497 kel mRNA 35084 Prediction 0.2202 kel RAID03992566 dme-mir-iab-4 miRNA MI0000432 kel mRNA 35084 Prediction 0.1828