DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 41181 hyd auaGUAAAGU--AUACGUUG--CAUUUAUgu ::|||:| ||| ||| |||||| cuaUGUUUUAAUUAUUAAACUUUUAAAUAaa 3 25 283 313 [dm3:3R:5540361-5540391:-] 0.5614 138 0 -4.53 -0.4671 MIMAT0000364 dme-miR-289 41181 hyd ucagcguccGAGGUGAAUUUAUAAAu :|: | | |||||| | uauuaaacuUUUAAAUAAAAUAUGUu 2 18 295 320 [dm3:3R:5540354-5540379:-] 0.5614 121 0 -3.76 -0.1725 MIMAT0005509 dme-miR-991 41181 hyd ugAAAGGUUUGAUGUUGAAAUu ||||: ||:| ||||||| caUUUCUUAAUU--AACUUUAg 2 21 40 59 [dm3:3R:5540615-5540634:-] 0.4672 161 7 -10.95 -1.0761 MIMAT0005509 dme-miR-991 41181 hyd ugaAAGGUU--UGAUGUUGAAAuu ||::|| |:|| |||||| augUUUUAAUUAUUA-AACUUUua 3 20 285 307 [dm3:3R:5540367-5540389:-] 0.5614 136 0 -6.32 -0.4800 MIMAT0005022 dme-miR-1009 41181 hyd gacUUUACAUU-GUUAAAAACUCu || | ||: : |||||||| auuAACUUUAGUUUUUUUUUGAGu 2 21 49 72 [dm3:3R:5540602-5540625:-] 0.4672 151 7 -8.27 -1.1095 MIMAT0005026 dme-miR-1013 41181 hyd gcucaagccGUAUGAAAAUa :| ||||||| uuuaauuauUAAACUUUUAa 2 12 289 308 [dm3:3R:5540366-5540385:-] 0.5614 143 7 -5.17 -1.3469 MIMAT0011784 dme-miR-2279* 41181 hyd uuAAAG-UGUGUGU-CUAUAAAUu |||| || : |: ||||||| agUUUCGACUUUCGUCAUAUUUAa 2 21 70 93 [dm3:3R:5540581-5540604:-] 0.4672 150 7 -10.74 -0.6525 MIMAT0011791 dme-miR-2283 41181 hyd uaACAGCAUAAGUACUAUAAAAg | |: || | ||:|||| acUUUUAAAUAAAAUAUGUUUUc 2 22 301 323 [dm3:3R:5540351-5540373:-] 0.5614 129 0 -5.37 -0.3025 MIMAT0012216 dme-miR-2501 41181 hyd aaUCGGGUCCG----UGA-GGUUUGAAug ||||:| |: |:| ::|||||| gaAGCCUAUGUUUUAAUUAUUAAACUUuu 3 23 278 306 [dm3:3R:5540368-5540396:-] 0.5614 132 0 -13.99 -0.2253 MIMAT0000105 dme-miR-1 41181 hyd gaGGUAUGAA---GAAAUGUAAGGu :||||:|| | | |||||| cgUCAUAUUUAACCAUACCAUUCCc 2 21 82 106 [dm3:3R:5540568-5540592:-] 0.4672 127 6 -14.04 -0.1249 MIMAT0012531 dme-miR-10-3p 41181 hyd uuuggagagaucUUGGCUUAAAc | :||||||| uguuuaaaauuuAUUCGAAUUUg 2 12 123 145 [dm3:3R:5540529-5540551:-] 0.4672 143 7 -12.33 -1.1636 MIMAT0005463 dme-miR-iab-4as-5p 41181 hyd gccauauggaagucAUAUGCAUu |:|||||| gaauuugaacaauuUGUACGUAa 2 10 139 161 [dm3:3R:5540513-5540535:-] 0.4672 129 6 -11.70 -0.1610 MIMAT0005501 dme-miR-927 41181 hyd ccAUUUCGCAUCCUUAAGAUUu |||| || | |||||| aaUAAA--AUAUGUUUUCUAAa 2 21 308 327 [dm3:3R:5540347-5540366:-] 0.5614 121 6 -6.21 -0.1859 MIMAT0005019 dme-miR-1006 41181 hyd gauACUUAUUCUUUAGCUUAAAu | || | | |||||||| uguUUAAAAUUUAUUCGAAUUUg 2 21 123 145 [dm3:3R:5540529-5540551:-] 0.4672 152 7 -8.80 -1.1655 MIMAT0005024 dme-miR-1011 41181 hyd gacgcUCGCUAAACUUGGUUAUu | | ||| |||||||| ccaacAUCCAUUGUAACCAAUAa 2 19 235 257 [dm3:3R:5540417-5540439:-] 0.5614 158 7 -11.69 -1.1671 MIMAT0005027 dme-miR-1014 41181 hyd gacgUUUACUUUUACUUAAAa |||| | |||||| uuuaAAAUUUAUUCGAAUUUg 2 18 125 145 [dm3:3R:5540529-5540549:-] 0.4672 121 6 -2.07 -0.1990

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score hyd RAID00706229 dme-miR-991-3p miRNA MIMAT0005509 hyd mRNA 41181 Prediction 0.1828 hyd RAID00742343 dme-miR-927-5p miRNA MIMAT0005501 hyd mRNA 41181 Prediction 0.2202 hyd RAID01147343 dme-miR-1014-3p miRNA MIMAT0005027 hyd mRNA 41181 Prediction 0.1828 hyd RAID01172385 dme-miR-1006-3p miRNA MIMAT0005019 hyd mRNA 41181 Prediction 0.2202 hyd RAID01566422 dme-miR-1013-3p miRNA MIMAT0005026 hyd mRNA 41181 Prediction 0.1828 hyd RAID02090581 dme-miR-1009-3p miRNA MIMAT0005022 hyd mRNA 41181 Prediction 0.1828 hyd RAID02368434 dme-miR-277-3p miRNA MIMAT0000338 hyd mRNA 41181 Prediction 0.1828 hyd RAID02439083 dme-miR-1011-3p miRNA MIMAT0005024 hyd mRNA 41181 Prediction 0.2202 hyd RAID02696307 dme-miR-10-3p miRNA MIMAT0012531 hyd mRNA 41181 Prediction 0.1828 hyd RAID02732397 dme-miR-1-3p miRNA MIMAT0000105 hyd mRNA 41181 Prediction 0.1828 hyd RAID03228085 dme-miR-iab-8-5p miRNA MIMAT0005463 hyd mRNA 41181 Prediction 0.1828