DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 41085 neur ugGUCAUGGACUACAUUAUGAgu :| |||| || |||||| ugUAAUACC--AUUAAAUACUga 3 22 1409 1429 [dm3:3R:4846086-4846106:-] 0.6132 134 0 -8.47 -0.1273 MIMAT0000343 dme-miR-280 41085 neur auaGUAAAGUAUACGU-UGCAUUUAUGu :||||:| ||| | || ||||||: acgUAUUUUA-AUGGAGACUUAAAUAUa 2 25 945 971 [dm3:3R:4846544-4846570:-] 0.6132 157 0 -13.54 -0.1351 MIMAT0000343 dme-miR-280 41085 neur auagUAAAGUA-UACGUUGCAUUUAUGu || ::| || | |: ||||||| cgcaAUGCUGUAAUACCAU-UAAAUACu 2 24 1401 1427 [dm3:3R:4846088-4846114:-] 0.6132 148 7 -9.05 -0.9359 MIMAT0000343 dme-miR-280 41085 neur auaGUAAAGUAUACGU-UGCAUUUAUGu :||||:| ||| | || ||||||: acgUAUUUUA-AUGGAGACUUAAAUAUa 2 25 945 971 [dm3:3R:4846544-4846570:-] 0.6132 157 0 -13.54 -0.1723 MIMAT0000363 dme-miR-288 41085 neur guacUUUACUUUAGCUGUACUUu ||: :| |: ||||||| uaccAAGCAGAUUUAACAUGAAg 2 20 1096 1118 [dm3:3R:4846397-4846419:-] 0.6132 151 7 -9.34 -0.8345 MIMAT0000364 dme-miR-289 41085 neur ucagcguccgaggugaauuUAUAAAu |||||| uaaauguauuuaugaaauuAUAUUUg 2 8 1360 1385 [dm3:3R:4846130-4846155:-] 0.6132 120 6 -6.71 -0.1683 MIMAT0000388 dme-miR-303 41085 neur uggucaaaggacacuuUGGAUUu |||||| aagcggauaaaacuuuACCUAAg 2 8 1127 1149 [dm3:3R:4846366-4846388:-] 0.6132 120 6 -10.91 -0.1664 MIMAT0005464 dme-miR-iab-4as-3p 41085 neur auUUGCAUAUGACUUACAUAGg ||| | || |||||||: uaAACAUUUA---AAUGUAUUu 2 21 1352 1370 [dm3:3R:4846145-4846163:-] 0.6132 136 0 -7.65 -0.1488 MIMAT0005475 dme-miR-961 41085 neur uagagucaaugaccACUAGUUu ||||||: uaaugaacaaagauUGAUCAGa 2 9 700 721 [dm3:3R:4846794-4846815:-] 0.5290 124 0 -8.31 -0.1280 MIMAT0005475 dme-miR-961 41085 neur uagagucaaugaccACUAGUUu ||||||: uaaugaacaaagauUGAUCAGa 2 9 700 721 [dm3:3R:4846794-4846815:-] 0.5290 124 0 -8.31 -0.1633 MIMAT0005499 dme-miR-983 41085 neur aguaaucaagcUUUGCAUAAUa |:|||||||| caccacaaaaaAGACGUAUUAa 2 12 870 891 [dm3:3R:4846624-4846645:-] 0.6132 151 7 -10.15 -1.0610 MIMAT0005499 dme-miR-983 41085 neur aguAAUCAAGCUUUGCAUAAUa ||| | :| :|||||| acuUUACCUAAGAUUGUAUUAa 2 20 1138 1159 [dm3:3R:4846356-4846377:-] 0.6132 135 6 -5.60 -0.1995 MIMAT0005499 dme-miR-983 41085 neur aguaaucaagcUUUGCAUAAUa |:|||||||| caccacaaaaaAGACGUAUUAa 2 12 870 891 [dm3:3R:4846624-4846645:-] 0.6132 151 7 -10.15 -1.1212 MIMAT0005500 dme-miR-984 41085 neur uuuaagguuggcauAAAUGGAgu ||||||| aaagcggauaaaacUUUACCUaa 3 10 1126 1148 [dm3:3R:4846367-4846389:-] 0.6132 125 0 -8.29 -0.1233 MIMAT0005502 dme-miR-985 41085 neur acGGGCUGGUAACCUUGUAAAc ||: :||| | ||||||| uuCCUAGCCA-AGCAACAUUUa 2 21 16 36 [dm3:3R:4847479-4847499:-] 0.4325 154 7 -12.88 -0.7864 MIMAT0005502 dme-miR-985 41085 neur acggGCUGGUAACCUUGUAAAc :|||:| ||||||| guuaUGACUA----AACAUUUa 2 19 1344 1361 [dm3:3R:4846154-4846171:-] 0.6132 141 7 -9.81 -1.2071 MIMAT0005502 dme-miR-985 41085 neur acGGGCUGGUAACCUUGUAAAc ||: :||| | ||||||| uuCCUAGCCA-AGCAACAUUUa 2 21 16 36 [dm3:3R:4847479-4847499:-] 0.4325 154 7 -12.88 -0.8663 MIMAT0005509 dme-miR-991 41085 neur ugaaagGUUUGAUGUUGAAAUu |::| || ||||||| gcaaagCGGA-UAAAACUUUAc 2 17 1124 1144 [dm3:3R:4846371-4846391:-] 0.6132 150 7 -8.09 -0.8436 MIMAT0005509 dme-miR-991 41085 neur ugAAAGGU--UUGAUG-UUGAAAuu || ||| ||: |: |||||| uaUUGCCACUAAUAAUAAACUUUua 3 21 1274 1298 [dm3:3R:4846217-4846241:-] 0.6132 134 0 -7.79 -0.3261 MIMAT0005509 dme-miR-991 41085 neur ugAAAGGUUUGAU--GUUG-AAAUu ||||| |:| | |||| |||| cgUUUCCUAGCCAAGCAACAUUUAc 2 21 13 37 [dm3:3R:4847478-4847502:-] 0.4325 131 0 -10.92 -0.2150 MIMAT0005509 dme-miR-991 41085 neur ugAAAGGUUUGAU--GUUG-AAAUu ||||| |:| | |||| |||| cgUUUCCUAGCCAAGCAACAUUUAc 2 21 13 37 [dm3:3R:4847478-4847502:-] 0.4325 131 0 -10.92 -0.2631 MIMAT0005022 dme-miR-1009 41085 neur gaCUUUA-CAUUGUUAAAAAC-UCu ||:|| | |: ||||||| || gaGAGAUAGGCAUUAUUUUUGCAGa 2 22 128 152 [dm3:3R:4847363-4847387:-] 0.4325 128 0 -11.87 -0.9734 MIMAT0005022 dme-miR-1009 41085 neur gaCUUUA-CAUUGUUAAAAAC-UCu ||:|| | |: ||||||| || gaGAGAUAGGCAUUAUUUUUGCAGa 2 22 128 152 [dm3:3R:4847363-4847387:-] 0.4325 128 0 -11.87 -1.0384 MIMAT0005025 dme-miR-1012 41085 neur gaUACCCCUUUUAGAAACUGAUu | | | |||| ||||||| acAAGAAGCAAAU-AUUGACUAc 2 22 624 645 [dm3:3R:4846870-4846891:-] 0.5290 151 7 -7.50 -0.7452 MIMAT0005025 dme-miR-1012 41085 neur gauaccccuuuuagaaACUGAUu |||||| auacugcgccuaguuaUGACUAa 2 8 1332 1354 [dm3:3R:4846161-4846183:-] 0.6132 120 6 -9.09 -0.2062 MIMAT0005025 dme-miR-1012 41085 neur gaUACCCCUUUUAGAAACUGAUu | | | |||| ||||||| acAAGAAGCAAAU-AUUGACUAc 2 22 624 645 [dm3:3R:4846870-4846891:-] 0.5290 151 7 -7.50 -0.8321 MIMAT0005026 dme-miR-1013 41085 neur gcucaagccGUAUGAAAAUa :| ||||||| cacuaauaaUAAACUUUUAa 2 12 1280 1299 [dm3:3R:4846216-4846235:-] 0.6132 143 7 -5.17 -1.2959 MIMAT0011784 dme-miR-2279* 41085 neur uuaaagUGUGUGUCUAUAAAUu || :| | ||||||| auggagACUUAAAUAUAUUUAa 2 17 955 976 [dm3:3R:4846539-4846560:-] 0.6132 152 7 -4.94 -1.2565 MIMAT0011784 dme-miR-2279* 41085 neur uuaaaGUGUGUGUCUAUAAAUu ||: :| | :|||||| cuaaaCAUUUAAAUGUAUUUAu 2 18 1351 1372 [dm3:3R:4846143-4846164:-] 0.6132 137 6 -5.19 -0.1596 MIMAT0011784 dme-miR-2279* 41085 neur uuaAAGUGUGUGUCUAUAAAUu ||:|:: | ||||||: guaUUUAUGAAAUUAUAUUUGa 2 20 1365 1386 [dm3:3R:4846129-4846150:-] 0.6132 135 0 -5.73 -0.2430 MIMAT0011784 dme-miR-2279* 41085 neur uuAAAGUGUGUGUC-UAUAA-AUu || :|:|| || ||||| || aaUUGAGCGCAAAGAAUAUUAUAu 2 21 102 125 [dm3:3R:4847390-4847413:-] 0.4325 123 0 -9.55 -0.2301 MIMAT0011784 dme-miR-2279* 41085 neur uuaaagUGUGUGUCUAUAAAUu || :| | ||||||| auggagACUUAAAUAUAUUUAa 2 17 955 976 [dm3:3R:4846539-4846560:-] 0.6132 152 7 -4.94 -1.2815 MIMAT0011784 dme-miR-2279* 41085 neur uuAAAGUGUGUGUC-UAUAA-AUu || :|:|| || ||||| || aaUUGAGCGCAAAGAAUAUUAUAu 2 21 102 125 [dm3:3R:4847390-4847413:-] 0.4325 123 0 -9.55 -0.2807 MIMAT0011786 dme-miR-2280 41085 neur uauaaaAUAA-CGGUUCGAUUCu |||| || |||||| aagacgUAUUAAGCACGCUAAGc 2 17 880 902 [dm3:3R:4846613-4846635:-] 0.6132 123 6 -8.85 -0.1150 MIMAT0011787 dme-miR-2280* 41085 neur agucaaucgaACCUUCAUUUAa | |:||||||| ugcauccggaUAGGAGUAAAUg 2 13 1243 1264 [dm3:3R:4846251-4846272:-] 0.6132 148 7 -8.58 -0.4115 MIMAT0011787 dme-miR-2280* 41085 neur agUCAAU-CGAACCUUC-AUUUAa | ||| ||| |||| ||||| cgAAUUAUGCU--GAAGUUAAAUc 2 21 823 844 [dm3:3R:4846671-4846692:-] 0.6132 124 0 -7.39 -0.9152 MIMAT0011787 dme-miR-2280* 41085 neur agUCAAU-CGAACCUUC-AUUUAa | ||| ||| |||| ||||| cgAAUUAUGCU--GAAGUUAAAUc 2 21 823 844 [dm3:3R:4846671-4846692:-] 0.6132 124 0 -7.39 -0.9939 MIMAT0011788 dme-miR-2281* 41085 neur aaCGUAGACGUCGACGUCU-AUUa |||| | : :|||||| ||| agGCAU-UAUUUUUGCAGACUAAa 2 22 135 157 [dm3:3R:4847358-4847380:-] 0.4325 123 0 -13.23 -0.5559 MIMAT0011788 dme-miR-2281* 41085 neur aaCGUAGACGUCGACGUCU-AUUa |||| | : :|||||| ||| agGCAU-UAUUUUUGCAGACUAAa 2 22 135 157 [dm3:3R:4847358-4847380:-] 0.4325 123 0 -13.23 -0.6381 MIMAT0011791 dme-miR-2283 41085 neur uaacaGCAUAAGUAC-----UAUAAAag :|||||:||| |||||| uuaaaUGUAUUUAUGAAAUUAUAUUUga 3 19 1359 1386 [dm3:3R:4846129-4846156:-] 0.6132 137 0 -11.92 -0.2387 MIMAT0011791 dme-miR-2283 41085 neur uaACAGCAUAAGUACUAUAAAag || | || | |||||| aaUGGAGACUUAAAUAUAUUUaa 3 22 954 976 [dm3:3R:4846539-4846561:-] 0.6132 129 0 -0.90 -0.1805 MIMAT0011791 dme-miR-2283 41085 neur uaACAGCAUAAGUACUAUAAAag || | || | |||||| aaUGGAGACUUAAAUAUAUUUaa 3 22 954 976 [dm3:3R:4846539-4846561:-] 0.6132 129 0 -0.90 -0.2278 MIMAT0012198 dme-miR-2491 41085 neur ucguugacguuuccGUUGUCGc ||||||| cuuguauguuguacCAACAGCu 2 9 998 1019 [dm3:3R:4846496-4846517:-] 0.6132 140 7 -12.48 -0.7743 MIMAT0012198 dme-miR-2491 41085 neur ucguugacguuuccGUUGUCGc ||||||| cuuguauguuguacCAACAGCu 2 9 998 1019 [dm3:3R:4846496-4846517:-] 0.6132 140 7 -12.48 -0.8908 MIMAT0012201 dme-miR-2493 41085 neur ugcggagcguguuuauGUGUGCc |||||| cuaucaacuaauuuauCACACGu 2 8 195 217 [dm3:3R:4847298-4847320:-] 0.4723 120 6 -11.79 -0.1408 MIMAT0012201 dme-miR-2493 41085 neur ugcggagcguguuuauGUGUGCc |||||| cuaucaacuaauuuauCACACGu 2 8 195 217 [dm3:3R:4847298-4847320:-] 0.4723 120 6 -11.79 -0.1748 MIMAT0012202 dme-miR-2494* 41085 neur aaggguuagaccacGUGAAUg |||||| cgcauuuuaaauuaCACUUAa 2 8 917 937 [dm3:3R:4846578-4846598:-] 0.6132 120 6 -9.78 -0.1105 MIMAT0012202 dme-miR-2494* 41085 neur aaggguuagaccacGUGAAUg |||||| cgcauuuuaaauuaCACUUAa 2 8 917 937 [dm3:3R:4846578-4846598:-] 0.6132 120 6 -9.78 -0.1417 MIMAT0012216 dme-miR-2501 41085 neur aaucgGGUCCGUGAGGUUUGAAug ||| |: :|||||| uauugCCACUAAUAAUAAACUUuu 3 20 1274 1297 [dm3:3R:4846218-4846241:-] 0.6132 127 0 -10.70 -0.1941 MIMAT0012217 dme-miR-2501* 41085 neur uuucuuucaaacUAACGUUCUCa | |||||||| ccaaaauagaaaACUGCAAGAGc 2 12 741 763 [dm3:3R:4846752-4846774:-] 0.5290 147 7 -12.75 -0.5078 MIMAT0012217 dme-miR-2501* 41085 neur uuucuuucaaacUAACGUUCUCa | |||||||| ccaaaauagaaaACUGCAAGAGc 2 12 741 763 [dm3:3R:4846752-4846774:-] 0.5290 147 7 -12.75 -0.5977 MIMAT0000114 dme-miR-9a 41085 neur agUAUGUCGAUCUAUUGGUUUCu :||:| ||: | |||||||| uuGUAUA-CUGAAAAACCAAAGu 2 22 344 365 [dm3:3R:4847150-4847171:-] 0.5121 163 7 -14.87 -0.9416 MIMAT0000114 dme-miR-9a 41085 neur agUAUGUCGAUCUAUUGGUUUCu :||:| ||: | |||||||| uuGUAUA-CUGAAAAACCAAAGu 2 22 344 365 [dm3:3R:4847150-4847171:-] 0.5121 163 7 -14.87 -1.0099 MIMAT0012531 dme-miR-10-3p 41085 neur uuuggAGAGAUCUU--GGCUUAAAc |:| ||| | ::|||||| aggagUUUAUAGUAUUUUGAAUUUa 2 19 373 397 [dm3:3R:4847118-4847142:-] 0.5121 137 6 -10.21 -0.2402 MIMAT0012531 dme-miR-10-3p 41085 neur uuuggAGAGAUCUU--GGCUUAAAc |:| ||| | ::|||||| aggagUUUAUAGUAUUUUGAAUUUa 2 19 373 397 [dm3:3R:4847118-4847142:-] 0.5121 137 6 -10.21 -0.2924 MIMAT0000120 dme-miR-14 41085 neur auCCUCU-CUC-UUU--UUCUG-ACu ||| | ||| ||| ||||| || ccGGAUAGGAGUAAAUGAAGACAUGu 2 20 1248 1273 [dm3:3R:4846242-4846267:-] 0.6132 120 0 -16.61 -0.8847 MIMAT0000120 dme-miR-14 41085 neur auccUCUCUCUUUUUCUGAcu | ||| |||||||| aaacAUAGAACAAAAGACUug 3 18 981 1001 [dm3:3R:4846514-4846534:-] 0.6132 141 0 -11.28 -0.1270 MIMAT0000319 dme-miR-263a 41085 neur cacUUAAGAAGGUCACGGUAAUUg ||| | | :| | ||||||| cgcAAUGC-UGUAAUACCAUUAAa 2 22 1401 1423 [dm3:3R:4846092-4846114:-] 0.6132 155 7 -8.35 -1.2699 MIMAT0000332 dme-miR-274 41085 neur uaaugggcaaucacagccaGUGUUUu |||||| cuucauccaacaaagacacCACAAAa 2 8 854 879 [dm3:3R:4846636-4846661:-] 0.6132 120 6 -11.22 -0.1031 MIMAT0000332 dme-miR-274 41085 neur uaaugggcaaucacagccaGUGUUUu |||||| aaauguaauaagcaaagaaCACAAAg 2 8 1168 1193 [dm3:3R:4846322-4846347:-] 0.6132 120 6 -12.35 -0.1387 MIMAT0000332 dme-miR-274 41085 neur uaaugggcaaucacagccaGUGUUUu |||||| cuucauccaacaaagacacCACAAAa 2 8 854 879 [dm3:3R:4846636-4846661:-] 0.6132 120 6 -11.22 -0.1323 MIMAT0000334 dme-miR-92a 41085 neur uauccggcccUGUU-CACGUUac ||:| |||||| uaaauuccaaACGAUGUGCAAaa 3 13 450 472 [dm3:3R:4847043-4847065:-] 0.5121 127 0 -11.89 -0.1036 MIMAT0000334 dme-miR-92a 41085 neur uauccggcccUGUU-CACGUUac ||:| |||||| uaaauuccaaACGAUGUGCAAaa 3 13 450 472 [dm3:3R:4847043-4847065:-] 0.5121 127 0 -11.89 -0.1296 MIMAT0000338 dme-miR-277 41085 neur acagcaUGGUCUAUCACGUAAAu || || |: ||||||| auacacACAAGUUGUUGCAUUUu 2 18 73 95 [dm3:3R:4847420-4847442:-] 0.4325 157 7 -9.79 -0.5704 MIMAT0000338 dme-miR-277 41085 neur acagcaUGGUCUAUCACGUAAAu || || |: ||||||| auacacACAAGUUGUUGCAUUUu 2 18 73 95 [dm3:3R:4847420-4847442:-] 0.4325 157 7 -9.79 -0.6529 MIMAT0000341 dme-miR-279 41085 neur aauuACUCACACCUAGAUCAGu | ||| ||||||| uacuUAAGUUAAUUUCUAGUCa 2 19 800 821 [dm3:3R:4846694-4846715:-] 0.6132 142 7 -13.13 -1.2422 MIMAT0000341 dme-miR-279 41085 neur aauuACUCACACCUAGAUCAGu | ||| ||||||| uacuUAAGUUAAUUUCUAGUCa 2 19 800 821 [dm3:3R:4846694-4846715:-] 0.6132 142 7 -13.13 -1.2702 MIMAT0000346 dme-miR-282 41085 neur ugUCUG-UUUCGGAUC-AUC---U-C--CGAUCUAa |||| |||| :||| ||| | | ||||||| gcAGACUAAAGAUUAGAUAGUUUACGCAGCUAGAUu 2 27 148 183 [dm3:3R:4847332-4847367:-] 0.4325 161 7 -25.83 -0.3774 MIMAT0000346 dme-miR-282 41085 neur ugUCUG-UUUCGGAUC-AUC---U-C--CGAUCUAa |||| |||| :||| ||| | | ||||||| gcAGACUAAAGAUUAGAUAGUUUACGCAGCUAGAUu 2 27 148 183 [dm3:3R:4847332-4847367:-] 0.4325 161 7 -25.83 -0.4477 MIMAT0000347 dme-miR-283 41085 neur ucuuaauggucgacUAUAAAu |||||| auggagacuuaaauAUAUUUa 2 8 955 975 [dm3:3R:4846540-4846560:-] 0.6132 120 6 -5.46 -0.2264 MIMAT0000347 dme-miR-283 41085 neur ucuuaauggucgacUAUAAAu |||||| auggagacuuaaauAUAUUUa 2 8 955 975 [dm3:3R:4846540-4846560:-] 0.6132 120 6 -5.46 -0.2829 MIMAT0000356 dme-miR-285 41085 neur cgUGACUAAAGCUUACCACGAu | | |||| ||||||| uuAAUCAUUU----UGGUGCUa 2 21 511 528 [dm3:3R:4846987-4847004:-] 0.5290 143 7 -12.85 -1.1522 MIMAT0000356 dme-miR-285 41085 neur cgUGACUAAAGCUUACCACGAu | | |||| ||||||| uuAAUCAUUU----UGGUGCUa 2 21 511 528 [dm3:3R:4846987-4847004:-] 0.5290 143 7 -12.85 -1.1930 MIMAT0000358 dme-miR-92b 41085 neur cguccggcccUGAU-CACGUUaa || | |||||| uaaauuccaaACGAUGUGCAAaa 3 13 450 472 [dm3:3R:4847043-4847065:-] 0.5121 123 0 -9.39 -0.1036 MIMAT0000358 dme-miR-92b 41085 neur cguccggcccUGAU-CACGUUaa || | |||||| uaaauuccaaACGAUGUGCAAaa 3 13 450 472 [dm3:3R:4847043-4847065:-] 0.5121 123 0 -9.39 -0.1296 MIMAT0000359 dme-miR-286 41085 neur ucgugcucacaagccAGAUCAGu ||||||| guacuuaaguuaauuUCUAGUCa 2 9 799 821 [dm3:3R:4846694-4846716:-] 0.6132 140 7 -14.77 -1.2435 MIMAT0000359 dme-miR-286 41085 neur ucgugcucacaagccAGAUCAGu ||||||| guacuuaaguuaauuUCUAGUCa 2 9 799 821 [dm3:3R:4846694-4846716:-] 0.6132 140 7 -14.77 -1.2712 MIMAT0000362 dme-miR-263b 41085 neur cacuuaagagggucACGGUUc |||||| ugcaguuagaaaauUGCCAAu 2 8 1062 1082 [dm3:3R:4846433-4846453:-] 0.6132 120 6 -7.50 -0.1254 MIMAT0000392 dme-miR-9c 41085 neur agAUGUCGAUCUUAUGGUUUCu ||:| ||: || ||||||| ugUAUA-CUGAAAAACCAAAGu 2 21 345 365 [dm3:3R:4847150-4847170:-] 0.5121 162 7 -13.99 -0.9416 MIMAT0000392 dme-miR-9c 41085 neur agAUGUCGAUCUUAUGGUUUCu ||:| ||: || ||||||| ugUAUA-CUGAAAAACCAAAGu 2 21 345 365 [dm3:3R:4847150-4847170:-] 0.5121 162 7 -13.99 -1.0099 MIMAT0000395 dme-miR-9b 41085 neur guAUGUCGAUUUUAGUGGUUUCu ||:| ||:||| ||||||| ugUAUA-CUGAAA-AACCAAAGu 2 22 345 365 [dm3:3R:4847150-4847170:-] 0.5121 161 7 -16.85 -0.9320 MIMAT0000395 dme-miR-9b 41085 neur guAUGUCGAUUUUAGUGGUUUCu ||:| ||:||| ||||||| ugUAUA-CUGAAA-AACCAAAGu 2 22 345 365 [dm3:3R:4847150-4847170:-] 0.5121 161 7 -16.85 -1.0012 MIMAT0000402 dme-miR-310 41085 neur uuuccggcccuucACACGUUau ||||||| aaauuccaaacgaUGUGCAAaa 3 10 451 472 [dm3:3R:4847043-4847064:-] 0.5121 125 0 -9.33 -0.1036 MIMAT0000402 dme-miR-310 41085 neur uuuccggcccuucACACGUUau ||||||| aaauuccaaacgaUGUGCAAaa 3 10 451 472 [dm3:3R:4847043-4847064:-] 0.5121 125 0 -9.33 -0.1296 MIMAT0000403 dme-miR-311 41085 neur aguccggccacUUACACGUUau :|||||||| aaauuccaaacGAUGUGCAAaa 3 12 451 472 [dm3:3R:4847043-4847064:-] 0.5121 131 0 -11.72 -0.1036 MIMAT0000403 dme-miR-311 41085 neur aguccggccacUUACACGUUau :|||||||| aaauuccaaacGAUGUGCAAaa 3 12 451 472 [dm3:3R:4847043-4847064:-] 0.5121 131 0 -11.72 -0.1296 MIMAT0000404 dme-miR-312 41085 neur aguccggcagagUUCACGUUau | |||||| aaauuccaaacgAUGUGCAAaa 3 11 451 472 [dm3:3R:4847043-4847064:-] 0.5121 122 0 -9.98 -0.1036 MIMAT0000404 dme-miR-312 41085 neur aguccggcagagUUCACGUUau | |||||| aaauuccaaacgAUGUGCAAaa 3 11 451 472 [dm3:3R:4847043-4847064:-] 0.5121 122 0 -9.98 -0.1296 MIMAT0000405 dme-miR-313 41085 neur agcccgacacuUUUCACGUUau :| |||||| aaauuccaaacGAUGUGCAAaa 3 12 451 472 [dm3:3R:4847043-4847064:-] 0.5121 123 0 -6.99 -0.1026 MIMAT0000405 dme-miR-313 41085 neur agcccgacacuUUUCACGUUau :| |||||| aaauuccaaacGAUGUGCAAaa 3 12 451 472 [dm3:3R:4847043-4847064:-] 0.5121 123 0 -6.99 -0.1284 MIMAT0000407 dme-miR-315 41085 neur cgaaaGACUCGUUGUUAGUUUu :| | : :|||||||| caacaUUUACUCGCAAUCAAAc 2 18 28 49 [dm3:3R:4847466-4847487:-] 0.4325 149 7 -8.34 -0.1056 MIMAT0000407 dme-miR-315 41085 neur cgaaaGACUCGUUGUUAGUUUu :| | : :|||||||| caacaUUUACUCGCAAUCAAAc 2 18 28 49 [dm3:3R:4847466-4847487:-] 0.4325 149 7 -8.34 -0.1320 MIMAT0000408 dme-miR-316 41085 neur gcggucauucgccUUUUUCUGu |||||||| caaagacaccacaAAAAAGACg 2 10 864 885 [dm3:3R:4846630-4846651:-] 0.6132 145 7 -13.57 -0.9172 MIMAT0000408 dme-miR-316 41085 neur gcggucauucgccuUUUUCUGu ||||||| uauaaacauagaacAAAAGACu 2 9 978 999 [dm3:3R:4846516-4846537:-] 0.6132 140 7 -10.23 -0.8475 MIMAT0000408 dme-miR-316 41085 neur gcggucauucgccUUUUUCUGu |||||||| caaagacaccacaAAAAAGACg 2 10 864 885 [dm3:3R:4846630-4846651:-] 0.6132 145 7 -13.57 -0.9957 MIMAT0000408 dme-miR-316 41085 neur gcggucauucgccuUUUUCUGu ||||||| uauaaacauagaacAAAAGACu 2 9 978 999 [dm3:3R:4846516-4846537:-] 0.6132 140 7 -10.23 -0.9337 MIMAT0005466 dme-miR-955 41085 neur cuGUGAGUUUGGAGACGUGC-UAc ||||:||: : |||||| || uaCACUUAAG-UAGUGCACGUAUu 2 22 929 951 [dm3:3R:4846564-4846586:-] 0.6132 127 0 -20.92 -0.9580 MIMAT0005466 dme-miR-955 41085 neur cuGUGAGUUUGGAGACGUGC-UAc ||||:||: : |||||| || uaCACUUAAG-UAGUGCACGUAUu 2 22 929 951 [dm3:3R:4846564-4846586:-] 0.6132 127 0 -20.92 -1.0320 MIMAT0005467 dme-miR-190 41085 neur guUGGU-UCUUAU-AGU-UUG-UAUAGa |||| |||| | | ||| ||||| auACCAUUAAAUACUGACAACAAUAUCa 2 23 1413 1440 [dm3:3R:4846075-4846102:-] 0.6132 123 0 -9.12 -1.1899 MIMAT0005472 dme-miR-375 41085 neur auUGAAUUCG-GUUU---GCUUGUUu |:|||| : :||| |||||| auAUUUAACUAUAAACAUAGAACAAa 2 21 969 994 [dm3:3R:4846521-4846546:-] 0.6132 122 6 -12.11 -0.1950 MIMAT0005472 dme-miR-375 41085 neur auugaauucgguUUGCUUGUUu ||:|||||| gcagcacaaauuAAUGAACAAa 2 11 689 710 [dm3:3R:4846805-4846826:-] 0.5290 134 6 -13.15 -0.1171 MIMAT0005472 dme-miR-375 41085 neur auUGAAUUCG-GUUU---GCUUGUUu |:|||| : :||| |||||| auAUUUAACUAUAAACAUAGAACAAa 2 21 969 994 [dm3:3R:4846521-4846546:-] 0.6132 122 6 -12.11 -0.2455 MIMAT0005476 dme-miR-962 41085 neur cuguCGUAGUUAAAG--AGAUGGAAUa ||| ||| | | : |||||| gcuuGCAGCAACUACGAAUGACCUUAa 2 22 583 609 [dm3:3R:4846906-4846932:-] 0.5290 124 6 -13.62 -0.1149 MIMAT0005476 dme-miR-962 41085 neur cugUCGUAGUUAAA-GAGAUG-GAAUa ||| || ||| :||| |||| ugaAGCCGCAUUUUAAAUUACACUUAa 2 23 911 937 [dm3:3R:4846578-4846604:-] 0.6132 121 0 -10.50 -1.0824 MIMAT0005476 dme-miR-962 41085 neur cuguCGUAGUUAAAG--AGAUGGAAUa ||| ||| | | : |||||| gcuuGCAGCAACUACGAAUGACCUUAa 2 22 583 609 [dm3:3R:4846906-4846932:-] 0.5290 124 6 -13.62 -0.1448 MIMAT0005476 dme-miR-962 41085 neur cugUCGUAGUUAAA-GAGAUG-GAAUa ||| || ||| :||| |||| ugaAGCCGCAUUUUAAAUUACACUUAa 2 23 911 937 [dm3:3R:4846578-4846604:-] 0.6132 121 0 -10.50 -1.1393 MIMAT0005478 dme-miR-964 41085 neur uucAAUU-CGAGGGGAUA-AGAUu |||: :|:|:|||| |||| uacUUAGUUUUUCUCUAUGUCUAa 2 20 429 452 [dm3:3R:4847063-4847086:-] 0.5121 126 0 -15.62 -1.0201 MIMAT0005478 dme-miR-964 41085 neur uucAAUU-CGAGGGGAUA-AGAUu |||: :|:|:|||| |||| uacUUAGUUUUUCUCUAUGUCUAa 2 20 429 452 [dm3:3R:4847063-4847086:-] 0.5121 126 0 -15.62 -1.0796 MIMAT0005479 dme-miR-932 41085 neur gacgUUACGUGAUGCCUUAAcu ||| :| :|||||| uuugAAUUUAAAUUGGAAUUaa 3 19 388 409 [dm3:3R:4847106-4847127:-] 0.5121 130 0 -8.91 -0.2016 MIMAT0005479 dme-miR-932 41085 neur gacgUUACGUGAUGCCUUAAcu ||| :| :|||||| uuugAAUUUAAAUUGGAAUUaa 3 19 388 409 [dm3:3R:4847106-4847127:-] 0.5121 130 0 -8.91 -0.2473 MIMAT0005483 dme-miR-1002 41085 neur agcgggaaacauaggugAUGAAUu |||||| auuagucuagcccuaagUACUUAa 2 8 783 806 [dm3:3R:4846709-4846732:-] 0.6132 120 6 -13.64 -0.1084 MIMAT0005483 dme-miR-1002 41085 neur agcgggaaacauaggugAUGAAUu |||||| auuagucuagcccuaagUACUUAa 2 8 783 806 [dm3:3R:4846709-4846732:-] 0.6132 120 6 -13.64 -0.1390 MIMAT0005484 dme-miR-968 41085 neur guugggaaaUUACCUAUGAUGAAu ||| ||||||| caagaagcaAAUAUUGACUACUUu 2 16 625 648 [dm3:3R:4846867-4846890:-] 0.5290 143 7 -10.05 -0.3387 MIMAT0005484 dme-miR-968 41085 neur guugggaaaUUACCUAUGAUGAAu ||| ||||||| caagaagcaAAUAUUGACUACUUu 2 16 625 648 [dm3:3R:4846867-4846890:-] 0.5290 143 7 -10.05 -0.4095 MIMAT0005485 dme-miR-969 41085 neur uuUUGAAC--GAA--UCACCUUGAg | :||| :|| | |||||:| guAUUUUGAAUUUAAAUUGGAAUUa 2 20 384 408 [dm3:3R:4847107-4847131:-] 0.5121 129 0 -8.39 -0.1152 MIMAT0005485 dme-miR-969 41085 neur uuUUGAAC--GAA--UCACCUUGAg | :||| :|| | |||||:| guAUUUUGAAUUUAAAUUGGAAUUa 2 20 384 408 [dm3:3R:4847107-4847131:-] 0.5121 129 0 -8.39 -0.1437 MIMAT0005487 dme-miR-971 41085 neur agugacaUUCUUCAUUGUGGUu || || :|||||| uucauccAACAA-AGACACCAc 2 16 855 875 [dm3:3R:4846640-4846660:-] 0.6132 129 6 -8.91 -0.1338 MIMAT0005487 dme-miR-971 41085 neur agugacaUUCUUCAUUGUGGUu || || :|||||| uucauccAACAA-AGACACCAc 2 16 855 875 [dm3:3R:4846640-4846660:-] 0.6132 129 6 -8.91 -0.1706 MIMAT0005497 dme-miR-981 41085 neur acguccAAAGCAGCUGUUGCUu |||| | | |||||| aguuaaUUUC-UAGUCAACGAa 2 17 806 826 [dm3:3R:4846689-4846709:-] 0.6132 126 6 -11.64 -0.1102 MIMAT0005497 dme-miR-981 41085 neur acguccAAAGCAGCUGUUGCUu |||| | | |||||| aguuaaUUUC-UAGUCAACGAa 2 17 806 826 [dm3:3R:4846689-4846709:-] 0.6132 126 6 -11.64 -0.1413 MIMAT0005507 dme-miR-137 41085 neur gaugCACAUAAGA---GUUCGUUau | || | || ||||||| gcggGCGUUUCCUAGCCAAGCAAca 3 19 8 32 [dm3:3R:4847483-4847507:-] 0.5655 129 0 -11.21 -0.1341 MIMAT0005507 dme-miR-137 41085 neur gaugcACAUAAGAGUU-CGUUAu || |||:| || ||||| guuguUGCAUUUUAAACGCAAUu 2 18 83 105 [dm3:3R:4847410-4847432:-] 0.4325 129 0 -7.83 -0.3103 MIMAT0005507 dme-miR-137 41085 neur gaugcACAUAAGAGUUCGUUau |||| | |||||| aaaaaUGUAAU---AAGCAAag 3 18 1166 1184 [dm3:3R:4846331-4846349:-] 0.6132 125 0 -7.55 -0.1353 MIMAT0005507 dme-miR-137 41085 neur gaugCACAUAAGA---GUUCGUUau | || | || ||||||| gcggGCGUUUCCUAGCCAAGCAAca 3 19 8 32 [dm3:3R:4847483-4847507:-] 0.5655 129 0 -11.21 -0.1881 MIMAT0005507 dme-miR-137 41085 neur gaugcACAUAAGAGUU-CGUUAu || |||:| || ||||| guuguUGCAUUUUAAACGCAAUu 2 18 83 105 [dm3:3R:4847410-4847432:-] 0.4325 129 0 -7.83 -0.3728 MIMAT0005514 dme-miR-995 41085 neur uucggcUUAGU-ACACCACGAu ||||| | ||||||| gcgauuAAUCAUUUUGGUGCUa 2 16 507 528 [dm3:3R:4846987-4847008:-] 0.5290 158 7 -19.99 -1.1614 MIMAT0005514 dme-miR-995 41085 neur uucggcUUAGU-ACACCACGAu ||||| | ||||||| gcgauuAAUCAUUUUGGUGCUa 2 16 507 528 [dm3:3R:4846987-4847008:-] 0.5290 158 7 -19.99 -1.2008 MIMAT0005515 dme-miR-996 41085 neur ucugcUCGUACUUUAGAUCAGu ||: | | ||||||| acuuaAGU-UAAUUUCUAGUCa 2 18 801 821 [dm3:3R:4846694-4846714:-] 0.6132 143 7 -12.46 -1.2459 MIMAT0005515 dme-miR-996 41085 neur ucugcUCGUACUUUAGAUCAGu ||: | | ||||||| acuuaAGU-UAAUUUCUAGUCa 2 18 801 821 [dm3:3R:4846694-4846714:-] 0.6132 143 7 -12.46 -1.2731 MIMAT0005516 dme-miR-252 41085 neur gaggacgcCGUGA-UCAUGAAUc || || |||||||| uuagucuaGCCCUAAGUACUUAa 2 15 784 806 [dm3:3R:4846709-4846731:-] 0.6132 153 7 -12.20 -1.1568 MIMAT0005516 dme-miR-252 41085 neur gaggacgcCGUGA-UCAUGAAUc || || |||||||| uuagucuaGCCCUAAGUACUUAa 2 15 784 806 [dm3:3R:4846709-4846731:-] 0.6132 153 7 -12.20 -1.2011 MIMAT0005518 dme-miR-998 41085 neur cuCGACUUAG-AGUACCACGAu | | |||| |: ||||||| gcGAUUAAUCAUUUUGGUGCUa 2 20 507 528 [dm3:3R:4846987-4847008:-] 0.5290 158 7 -15.67 -1.1595 MIMAT0005518 dme-miR-998 41085 neur cuCGACUUAG-AGUACCACGAu | | |||| |: ||||||| gcGAUUAAUCAUUUUGGUGCUa 2 20 507 528 [dm3:3R:4846987-4847008:-] 0.5290 158 7 -15.67 -1.1992 MIMAT0005519 dme-miR-999 41085 neur ucugugucaGAAUGUCAAUUGu :||| ||||||: gcguguuugUUUAAAGUUAAUa 2 14 762 783 [dm3:3R:4846732-4846753:-] 0.5711 137 0 -11.29 -0.1140 MIMAT0005519 dme-miR-999 41085 neur ucugugucaGAAUGUCAAUUGu :||| ||||||: gcguguuugUUUAAAGUUAAUa 2 14 762 783 [dm3:3R:4846732-4846753:-] 0.5711 137 0 -11.29 -0.1460 MIMAT0005019 dme-miR-1006 41085 neur gauacuUAUUCUUUAGCUUAAAu |||: | |:|||||| gaguuuAUAGUAUUUUGAAUUUa 2 18 375 397 [dm3:3R:4847118-4847140:-] 0.5121 141 6 -9.92 -0.2423 MIMAT0005019 dme-miR-1006 41085 neur gauacuUAUUCUUUAGCUUAAAu |||: | |:|||||| gaguuuAUAGUAUUUUGAAUUUa 2 18 375 397 [dm3:3R:4847118-4847140:-] 0.5121 141 6 -9.92 -0.2950 MIMAT0005024 dme-miR-1011 41085 neur gaCGCUCGCUAAACUUGGUUAUu |: || | || :|||||| caGUUAGAAAAUU--GCCAAUAa 2 22 1064 1084 [dm3:3R:4846431-4846451:-] 0.6132 130 6 -9.20 -0.3511 MIMAT0005027 dme-miR-1014 41085 neur gacguuuacuuuuACUUAAAa ||||||| guuuauaguauuuUGAAUUUa 2 9 377 397 [dm3:3R:4847118-4847138:-] 0.5121 140 7 -3.57 -1.2581 MIMAT0005027 dme-miR-1014 41085 neur gacguuuacuuuuACUUAAAa ||||||| guuuauaguauuuUGAAUUUa 2 9 377 397 [dm3:3R:4847118-4847138:-] 0.5121 140 7 -3.57 -1.2805

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score neur RAID00007587 dme-miR-92b-3p miRNA MIMAT0000358 neur mRNA 41085 Prediction 0.1828 neur RAID00062601 dme-miR-284-3p miRNA MIMAT0000348 neur mRNA 41085 Prediction 0.2202 neur RAID00089024 dme-miR-969-5p miRNA MIMAT0005485 neur mRNA 41085 Prediction 0.1828 neur RAID00090698 dme-miR-985-3p miRNA MIMAT0005502 neur mRNA 41085 Prediction 0.1828 neur RAID00111223 dme-miR-998-3p miRNA MIMAT0005518 neur mRNA 41085 Prediction 0.2381 neur RAID00241326 dme-miR-263a-5p miRNA MIMAT0000319 neur mRNA 41085 Prediction 0.1828 neur RAID00313335 dme-miR-1012-3p miRNA MIMAT0005025 neur mRNA 41085 Prediction 0.1828 neur RAID00337608 dme-miR-996-3p miRNA MIMAT0005515 neur mRNA 41085 Prediction 0.2455 neur RAID00397446 dme-miR-976-3p miRNA MIMAT0005492 neur mRNA 41085 Prediction 0.1828 neur RAID00454553 dme-miR-981-3p miRNA MIMAT0005497 neur mRNA 41085 Prediction 0.2381 neur RAID00609234 dme-miR-252-5p miRNA MIMAT0005516 neur mRNA 41085 Prediction 0.2381 neur RAID00627645 dme-miR-932-5p miRNA MIMAT0005479 neur mRNA 41085 Prediction 0.1828 neur RAID00743963 dme-miR-962-5p miRNA MIMAT0005476 neur mRNA 41085 Prediction 0.2202 neur RAID00794402 dme-miR-991-3p miRNA MIMAT0005509 neur mRNA 41085 Prediction 0.1828 neur RAID00804767 dme-miR-137-3p miRNA MIMAT0005507 neur mRNA 41085 Prediction 0.1828 neur RAID00931469 dme-miR-968-5p miRNA MIMAT0005484 neur mRNA 41085 Prediction 0.2202 neur RAID01009216 dme-miR-9c-5p miRNA MIMAT0000392 neur mRNA 41085 Prediction 0.2381 neur RAID01074957 dme-miR-313-3p miRNA MIMAT0000405 neur mRNA 41085 Prediction 0.1828 neur RAID01121612 dme-miR-279-3p miRNA MIMAT0000341 neur mRNA 41085 Prediction 0.2381 neur RAID01156135 dme-miR-1011-3p miRNA MIMAT0005024 neur mRNA 41085 Prediction 0.2381 neur RAID01195967 dme-miR-995-3p miRNA MIMAT0005514 neur mRNA 41085 Prediction 0.2202 neur RAID01278997 dme-miR-10-3p miRNA MIMAT0012531 neur mRNA 41085 Prediction 0.1828 neur RAID01328647 dme-miR-980-3p miRNA MIMAT0005496 neur mRNA 41085 Prediction 0.1828 neur RAID01331237 dme-miR-283-5p miRNA MIMAT0000347 neur mRNA 41085 Prediction 0.1828 neur RAID01616689 dme-miR-274-5p miRNA MIMAT0000332 neur mRNA 41085 Prediction 0.1828 neur RAID01697573 dme-miR-286-3p miRNA MIMAT0000359 neur mRNA 41085 Prediction 0.2381 neur RAID01724004 dme-miR-9a-5p miRNA MIMAT0000114 neur mRNA 41085 Prediction 0.2202 neur RAID01748439 dme-mir-iab-4 miRNA MI0000432 neur mRNA 41085 Prediction 0.1828 neur RAID01884515 dme-miR-312-3p miRNA MIMAT0000404 neur mRNA 41085 Prediction 0.1828 neur RAID02133444 dme-miR-282-5p miRNA MIMAT0000346 neur mRNA 41085 Prediction 0.1828 neur RAID02317837 dme-miR-971-3p miRNA MIMAT0005487 neur mRNA 41085 Prediction 0.1828 neur RAID02325692 dme-miR-375-3p miRNA MIMAT0005472 neur mRNA 41085 Prediction 0.2381 neur RAID02514348 dme-miR-1002-5p miRNA MIMAT0005483 neur mRNA 41085 Prediction 0.2381 neur RAID02689606 dme-miR-1014-3p miRNA MIMAT0005027 neur mRNA 41085 Prediction 0.2202 neur RAID02746305 dme-miR-311-3p miRNA MIMAT0000403 neur mRNA 41085 Prediction 0.1828 neur RAID02800729 dme-miR-1006-3p miRNA MIMAT0005019 neur mRNA 41085 Prediction 0.2202 neur RAID02864038 dme-miR-14-3p miRNA MIMAT0000120 neur mRNA 41085 Prediction 0.1828 neur RAID02973379 dme-miR-316-5p miRNA MIMAT0000408 neur mRNA 41085 Prediction 0.2381 neur RAID03096000 dme-miR-92a-3p miRNA MIMAT0000334 neur mRNA 41085 Prediction 0.1828 neur RAID03098002 dme-miR-277-3p miRNA MIMAT0000338 neur mRNA 41085 Prediction 0.2455 neur RAID03141429 dme-miR-964-5p miRNA MIMAT0005478 neur mRNA 41085 Prediction 0.1828 neur RAID03247627 dme-miR-210-3p miRNA MIMAT0000355 neur mRNA 41085 Prediction 0.1828 neur RAID03351804 dme-miR-999-3p miRNA MIMAT0005519 neur mRNA 41085 Prediction 0.1828 neur RAID03522273 dme-miR-1013-3p miRNA MIMAT0005026 neur mRNA 41085 Prediction 0.1828 neur RAID03543942 dme-miR-263b-5p miRNA MIMAT0000362 neur mRNA 41085 Prediction 0.1828 neur RAID03611816 dme-miR-310-3p miRNA MIMAT0000402 neur mRNA 41085 Prediction 0.1828 neur RAID03636413 dme-miR-9b-5p miRNA MIMAT0000395 neur mRNA 41085 Prediction 0.2202 neur RAID03638746 dme-miR-87-3p miRNA MIMAT0000361 neur mRNA 41085 Prediction 0.1828 neur RAID03678821 dme-miR-303-5p miRNA MIMAT0000388 neur mRNA 41085 Prediction 0.1828 neur RAID03681601 dme-miR-285-3p miRNA MIMAT0000356 neur mRNA 41085 Prediction 0.2202 neur RAID03771920 dme-miR-955-5p miRNA MIMAT0005466 neur mRNA 41085 Prediction 0.1828 neur RAID03829536 dme-miR-315-5p miRNA MIMAT0000407 neur mRNA 41085 Prediction 0.2202 neur RAID03936277 dme-miR-190-5p miRNA MIMAT0005467 neur mRNA 41085 Prediction 0.1828 neur RAID03943400 dme-miR-963-5p miRNA MIMAT0005477 neur mRNA 41085 Prediction 0.1828