DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 35246 ref(2)P cacguuugcUAAAAGUUGUgu || |||||| auguuuuaaAUAAUCAACAaa 3 13 166 186 [dm3:2L:19545468-19545488:+] 0.4729 124 0 -6.26 -0.3061 MIMAT0000364 dme-miR-289 35246 ref(2)P ucagcgUCCGAG-GUGAAUUUA-UAAAu |||| | | | |||| |||| caauaaAGGCACAAAGUAAAAUGAUUU- 2 21 220 246 [dm3:2L:19545522-19545548:+] 0.4729 123 0 -7.55 -1.1567 MIMAT0005464 dme-miR-iab-4as-3p 35246 ref(2)P auUUGC-AUAU-GA-CUUACAUAGg | || |||| || |||||||| auAUCGAUAUAUCUACAAUGUAUCu 2 21 14 38 [dm3:2L:19545316-19545340:+] 0.4729 157 7 -13.73 -1.0866 MIMAT0005464 dme-miR-iab-4as-3p 35246 ref(2)P auuugcAUAUGACUUA-CAUAGg | |||| || ||||| agggauUUUACUUUAUCGUAUCa 2 17 65 87 [dm3:2L:19545367-19545389:+] 0.4729 120 0 -9.21 -1.0615 MIMAT0005482 dme-miR-967 35246 ref(2)P gcgaAGAGGUCUCCAUAGAGa ||| || | ||||||: uauaUCUACA-AUGUAUCUUc 2 18 21 40 [dm3:2L:19545323-19545342:+] 0.4729 139 0 -9.01 -0.1103 MIMAT0011791 dme-miR-2283 35246 ref(2)P uaacagcAUAAGUACUAUAAAAg ||| ::| ||:|||| aaauagaUAUAUGUUAUGUUUUa 2 17 151 173 [dm3:2L:19545453-19545475:+] 0.4729 140 0 -4.89 -0.1046 MIMAT0012196 dme-miR-2489 35246 ref(2)P ugacguUUAUGUUGUAUGUUAu :|||: |: |||||| aauaucGAUAU-AUCUACAAUg 2 17 13 33 [dm3:2L:19545315-19545335:+] 0.4729 122 6 -9.25 -0.1637 MIMAT0012200 dme-miR-2493* 35246 ref(2)P accgACACACACACACACUcg | | ||| ||||||| uauaUAUAUGUAUGUGUGAaa 3 18 196 216 [dm3:2L:19545498-19545518:+] 0.4729 141 0 -11.45 -0.1296 MIMAT0012215 dme-miR-2500 35246 ref(2)P gacuccAGGUGUGUGUUUUAGg |:||:|: ||| ||| ---auaUUCAUAUUCAAUAUCg 2 17 1 19 [dm3:2L:19545303-19545321:+] 0.6066 128 0 -9.61 -0.1543 MIMAT0012215 dme-miR-2500 35246 ref(2)P gacuccagguGUGUGUUUUAgg || ||||||| uuuaaauaauCA-ACAAAAUgu 3 13 170 190 [dm3:2L:19545472-19545492:+] 0.4729 126 0 -5.48 -0.1313 MIMAT0000332 dme-miR-274 35246 ref(2)P uaaugggcaaucacagccaGUGUUUu |||||| ugugaaauugcaauaaaggCACAAAg 2 8 210 235 [dm3:2L:19545512-19545537:+] 0.4729 120 6 -14.20 -0.1693 MIMAT0000334 dme-miR-92a 35246 ref(2)P uauccgGCCCUGUUCACGUUAc :| || || |||||| uguaugUGUGA-AAUUGCAAUa 2 17 204 224 [dm3:2L:19545506-19545526:+] 0.4729 122 6 -6.28 -0.1361 MIMAT0000346 dme-miR-282 35246 ref(2)P ugucUGUUUCGGAUCA-------UCUCCGAUCUAa ||: |||:|||| |: ||||||| uacuACGUAGCUUAGUUUUUCUGUGGUGCUAGAUu 2 25 91 125 [dm3:2L:19545393-19545427:+] 0.4729 151 7 -23.92 -0.7928 MIMAT0000356 dme-miR-285 35246 ref(2)P cgugaCUAAAGCUUACCACGAu | |||: :||||||| gcuuaGUUUUUCUGUGGUGCUa 2 18 100 121 [dm3:2L:19545402-19545423:+] 0.4729 153 7 -16.18 -0.6725 MIMAT0000358 dme-miR-92b 35246 ref(2)P cguccggcccugaucACGUUAa |||||| auguaugugugaaauUGCAAUa 2 8 203 224 [dm3:2L:19545505-19545526:+] 0.4729 120 6 -6.52 -0.1361 MIMAT0000362 dme-miR-263b 35246 ref(2)P caCUUAAGAGGGUCA-CGGUUc || || ||:| || ||||| uaGAUUUAUCUC-GUAGCCAAa 2 20 120 140 [dm3:2L:19545422-19545442:+] 0.4729 125 0 -13.17 -1.0799 MIMAT0000403 dme-miR-311 35246 ref(2)P aguccggcCACUUACACGUUAu ||||| |||||| auguauguGUGAAAUUGCAAUa 2 15 203 224 [dm3:2L:19545505-19545526:+] 0.4729 130 6 -14.29 -0.1361 MIMAT0000404 dme-miR-312 35246 ref(2)P aguccggcagaguucACGUUAu |||||| auguaugugugaaauUGCAAUa 2 8 203 224 [dm3:2L:19545505-19545526:+] 0.4729 120 6 -10.00 -0.1361 MIMAT0000405 dme-miR-313 35246 ref(2)P agcccgACAC-UUUUCACGUUAu |||| :||| |||||| uauguaUGUGUGAAAUUGCAAUa 2 17 202 224 [dm3:2L:19545504-19545526:+] 0.4729 135 6 -15.29 -0.1309 MIMAT0000407 dme-miR-315 35246 ref(2)P cgAAAGACUCGUUGUUAGUUuu | |:| | ||:|||||| uaUGUUUUA--AAUAAUCAAca 3 21 165 184 [dm3:2L:19545467-19545486:+] 0.4729 133 0 -7.76 -0.3233 MIMAT0005504 dme-miR-987 35246 ref(2)P guAGUUAGGUCUGAUAAAUGAAAu | || :|: | |||||||| aaUGAAAAAGGGAU-UUUACUUUa 2 23 57 79 [dm3:2L:19545359-19545381:+] 0.4729 148 7 -10.43 -1.0975 MIMAT0005512 dme-miR-993 35246 ref(2)P ucUAUGGACAUCU-CUGC-UCGAAg :||:| || | ||| ||||| ucGUAUCAGUUUACUACGUAGCUUa 2 22 80 104 [dm3:2L:19545382-19545406:+] 0.4729 120 0 -12.26 -1.0206 MIMAT0005514 dme-miR-995 35246 ref(2)P uucggcuuAGUACACCACGAu |: ||||||||| cuuaguuuUUCUGUGGUGCUa 2 14 101 121 [dm3:2L:19545403-19545423:+] 0.4729 153 7 -20.47 -0.6837 MIMAT0005518 dme-miR-998 35246 ref(2)P cuCGACUUAGA---GUACCACGAu ||| |:|:| ::||||||| uaGCUUAGUUUUUCUGUGGUGCUa 2 20 98 121 [dm3:2L:19545400-19545423:+] 0.4729 154 7 -21.48 -0.6837 MIMAT0005016 dme-miR-1003 35246 ref(2)P gacacuuauacAUUUACACUcu ||||||||| cguagccaaaaUAAAUGUGAaa 3 12 131 152 [dm3:2L:19545433-19545454:+] 0.4729 135 0 -8.53 -0.2559 MIMAT0005017 dme-miR-1004 35246 ref(2)P gacacucccUUCACUACACUcu || |||||| cguagccaaAAUAAAUGUGAaa 3 14 131 152 [dm3:2L:19545433-19545454:+] 0.4729 121 0 -5.03 -0.2627

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ref(2)P RAID00060977 dme-miR-274-5p miRNA MIMAT0000332 ref(2)P mRNA 35246 Prediction 0.1828 ref(2)P RAID00079078 dme-miR-310-3p miRNA MIMAT0000402 ref(2)P mRNA 35246 Prediction 0.1828 ref(2)P RAID00526804 dme-miR-311-3p miRNA MIMAT0000403 ref(2)P mRNA 35246 Prediction 0.2202 ref(2)P RAID00553209 dme-miR-285-3p miRNA MIMAT0000356 ref(2)P mRNA 35246 Prediction 0.2202 ref(2)P RAID00624899 dme-miR-987-5p miRNA MIMAT0005504 ref(2)P mRNA 35246 Prediction 0.2202 ref(2)P RAID00992032 dme-miR-312-3p miRNA MIMAT0000404 ref(2)P mRNA 35246 Prediction 0.2202 ref(2)P RAID01052763 dme-miR-92b-3p miRNA MIMAT0000358 ref(2)P mRNA 35246 Prediction 0.2202 ref(2)P RAID01072016 dme-miR-282-5p miRNA MIMAT0000346 ref(2)P mRNA 35246 Prediction 0.1828 ref(2)P RAID01268438 dme-miR-315-5p miRNA MIMAT0000407 ref(2)P mRNA 35246 Prediction 0.1828 ref(2)P RAID01432169 dme-miR-313-3p miRNA MIMAT0000405 ref(2)P mRNA 35246 Prediction 0.2202 ref(2)P RAID01646665 dme-miR-993-3p miRNA MIMAT0005512 ref(2)P mRNA 35246 Prediction 0.1828 ref(2)P RAID01957832 dme-miR-1003-3p miRNA MIMAT0005016 ref(2)P mRNA 35246 Prediction 0.1828 ref(2)P RAID01959012 dme-miR-92a-3p miRNA MIMAT0000334 ref(2)P mRNA 35246 Prediction 0.2202 ref(2)P RAID02421536 dme-miR-1004-3p miRNA MIMAT0005017 ref(2)P mRNA 35246 Prediction 0.1828 ref(2)P RAID02521947 dme-miR-995-3p miRNA MIMAT0005514 ref(2)P mRNA 35246 Prediction 0.2202 ref(2)P RAID03666812 dme-miR-263b-5p miRNA MIMAT0000362 ref(2)P mRNA 35246 Prediction 0.1828 ref(2)P RAID03929472 dme-miR-998-3p miRNA MIMAT0005518 ref(2)P mRNA 35246 Prediction 0.2202