DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 41737 trx gccccgcucucuuaCUAUUCc |||||| agaucagugucagaGAUAAGa 2 8 9 29 [dm3:3R:10090627-10090647:-] 0.5964 120 6 -10.19 -0.1440 MIMAT0000343 dme-miR-280 41737 trx auaGUAAAGUAUACGUUGCAUUUAUGu :||| |||| | | : ||||||: auaUAUUGCAUACGAAUUAUAAAUAUc 2 25 875 901 [dm3:3R:10089755-10089781:-] 0.5531 156 0 -10.26 -0.1255 MIMAT0000343 dme-miR-280 41737 trx auaguaaaguauacguugcaUUUAUGu |||||| gcuccacagauucuauaaacAAAUACa 2 8 737 763 [dm3:3R:10089893-10089919:-] 0.4835 120 6 -8.53 -0.1466 MIMAT0000364 dme-miR-289 41737 trx ucAGCGUCCGAGGUGA-AUUUAUAAAu |:||| | |:| ||||||| | uaUUGCAUAC-GAAUUAUAAAUAUCUa 2 25 878 903 [dm3:3R:10089753-10089778:-] 0.5531 125 0 -8.84 -0.1332 MIMAT0000388 dme-miR-303 41737 trx ugGUCAA-AGGACACUUUGGAUUu :| || |: | | | |||||| caUAUUUAUUAUUUUACACCUAAg 2 22 1188 1211 [dm3:3R:10089445-10089468:-] 0.4867 124 6 -10.33 -0.1412 MIMAT0005488 dme-miR-972 41737 trx cggauuUAUAAGCAUAACAUGu :|:|| | ||||||| gggcuuGUGUUAG-AUUGUACa 2 17 855 875 [dm3:3R:10089781-10089801:-] 0.5531 150 7 -15.66 -0.7918 MIMAT0005488 dme-miR-972 41737 trx cggauuuaUAAGCA-UAACAUGu | |:|| ||||||| cagcagccAAUUGUAAUUGUACu 2 15 1151 1173 [dm3:3R:10089483-10089505:-] 0.5199 149 7 -11.82 -0.7925 MIMAT0005488 dme-miR-972 41737 trx cgGAUUUAUAAGCA-----UAACAUGu || ::||||:|| ||||||| cuCU-GGUAUUUGUCCAAAAUUGUACa 2 21 1360 1385 [dm3:3R:10089271-10089296:-] 0.5241 149 7 -17.33 -0.7576 MIMAT0005488 dme-miR-972 41737 trx cggaUUUA-UAAGCA-UAACAUgu |:|| ||| | |||||| ggggAGAUAAUUAAUAAUUGUAaa 3 19 639 662 [dm3:3R:10089994-10090017:-] 0.4835 132 0 -5.06 -0.1200 MIMAT0005495 dme-miR-979 41737 trx aaucggacucaagcCCUUCUu |||||| ---------uaaaaGGAAGAu 2 8 1 12 [dm3:3R:10090644-10090655:-] 0.7315 120 6 -7.74 -0.1758 MIMAT0005026 dme-miR-1013 41737 trx gcucaagccgUAUGAAAAUa ||||||||| ccaaugcaagAUACUUUUAu 2 11 238 257 [dm3:3R:10090399-10090418:-] 0.4313 150 7 -9.51 -0.9902 MIMAT0005026 dme-miR-1013 41737 trx gcucaagccgUAUGAAAAUa ||||||||| ccaaugcaagAUACUUUUAu 2 11 238 257 [dm3:3R:10090399-10090418:-] 0.4313 150 7 -9.51 -1.1634 MIMAT0005026 dme-miR-1013 41737 trx gcucaagccGU-AUGAAAAUa || |:|||||| acccgaauaCAUUGCUUUUAa 2 12 150 170 [dm3:3R:10090486-10090506:-] 0.4313 130 6 -7.24 -0.1444 MIMAT0011784 dme-miR-2279* 41737 trx uuaaaGUGUGUGUCUAUAAAUu :|:|:|:| ||||||| auacaUAUAUAUAUAUAUUUAg 2 18 1070 1091 [dm3:3R:10089565-10089586:-] 0.5531 161 7 -12.49 -0.8547 MIMAT0011784 dme-miR-2279* 41737 trx uuaAAGUGUGUGUC-UAUAAAUu | ||: |: | ||||||| aacUCCAUUGAUUGCAUAUUUAu 2 20 1174 1196 [dm3:3R:10089460-10089482:-] 0.4867 146 7 -3.79 -0.5021 MIMAT0011784 dme-miR-2279* 41737 trx uuAAAGUGUGUGUCUAUAA-AUu || :| |:|: ||||| || aaUUAUAAAUAUCUAUAUUAUAu 2 21 889 911 [dm3:3R:10089745-10089767:-] 0.5531 120 0 -2.00 -0.9921 MIMAT0011786 dme-miR-2280 41737 trx uauaaaaUAACGGUUCGAUUCu || |:|||||||| aauacaaAUAACUAAGCUAAGc 2 16 758 779 [dm3:3R:10089877-10089898:-] 0.4835 155 7 -14.40 -0.7746 MIMAT0011786 dme-miR-2280 41737 trx uauaAAAUAACGGUUCGA-UUCu || |||| ||||| ||| ugccUUGAUUG--AAGCUCAAGc 2 19 1247 1267 [dm3:3R:10089389-10089409:-] 0.5241 123 0 -8.62 -0.3744 MIMAT0011788 dme-miR-2281* 41737 trx aaCGUAGACG-UCGACGUCUAUUa || | || | : ||||||| ggGCUUAGGCGAAUAACAGAUAAa 2 22 799 822 [dm3:3R:10089834-10089857:-] 0.5183 144 7 -12.26 -0.8613 MIMAT0011788 dme-miR-2281* 41737 trx aacguagacgucgacgUCUAUUa |||||| ggaagaucagugucagAGAUAAg 2 8 6 28 [dm3:3R:10090628-10090650:-] 0.7315 120 6 -9.39 -0.1046 MIMAT0011788 dme-miR-2281* 41737 trx aacguagacgucgacgUCUAUUa |||||| ggaagaucagugucagAGAUAAg 2 8 6 28 [dm3:3R:10090628-10090650:-] 0.7315 120 6 -9.39 -0.2320 MIMAT0011789 dme-miR-2281 41737 trx cgUUAUGACGUCU-AUGUCUAu |:| : :| | ||||||| aaAGUUUAAUAAACUACAGAUu 2 20 1545 1566 [dm3:3R:10089090-10089111:-] 0.6031 142 7 -7.91 -1.2428 MIMAT0011791 dme-miR-2283 41737 trx uaACAG--CAUAAGUACUAUAAAAg |||| | | |: | ||||||| gcUGUCGAGGAAUU-UUAUAUUUUu 2 22 1507 1530 [dm3:3R:10089126-10089149:-] 0.6031 150 7 -9.48 -0.9477 MIMAT0011791 dme-miR-2283 41737 trx uaacagcaUAAGUAC----UAUAAAAg |||:| | :|||||| ucuaagacAUUUACGAAAAGUAUUUUa 2 16 201 227 [dm3:3R:10090429-10090455:-] 0.4313 126 6 -2.72 -0.1816 MIMAT0012196 dme-miR-2489 41737 trx ugACGUUUAUGUUGUAUGU-UAu ||| |||: |:||||| || caUGCUUAUAU-AUAUACAUAUa 2 21 1057 1078 [dm3:3R:10089578-10089599:-] 0.5531 126 0 -12.81 -1.2498 MIMAT0012196 dme-miR-2489 41737 trx ugacgUUUAUGUUGUAUGUUAu ||| | || | ||||| uauaaAAAAAAAAAAAACAAUu 2 18 255 276 [dm3:3R:10090380-10090401:-] 0.4313 129 0 -3.52 -0.1067 MIMAT0012198 dme-miR-2491 41737 trx ucGUUGACGUUUCCGUUGUCGc |||| ||| ||||||| ggCAACCACAA---CAACAGCa 2 21 1137 1155 [dm3:3R:10089501-10089519:-] 0.5199 152 7 -17.26 -0.8396 MIMAT0012199 dme-miR-2492 41737 trx aaacuuucgagagcugUUUUGUa |||||| uuuuauaaaaaaaaaaAAAACAa 2 8 252 274 [dm3:3R:10090382-10090404:-] 0.4313 120 6 -2.74 -0.1486 MIMAT0012199 dme-miR-2492 41737 trx aaACUU-UCGAGAGCUGUU-UUGUa |||| || | |||| |||| ugUGAACAGGCAACCACAACAACAg 2 22 1129 1153 [dm3:3R:10089503-10089527:-] 0.5531 120 0 -7.60 -0.1486 MIMAT0012199 dme-miR-2492 41737 trx aaacuuucgagagcugUUUUGUa |||||| uuuuauaaaaaaaaaaAAAACAa 2 8 252 274 [dm3:3R:10090382-10090404:-] 0.4313 120 6 -2.74 -0.3018 MIMAT0012208 dme-miR-2497* 41737 trx uuguugauguaaaacGU-UACGAAUg || ||||||| aauaauauccgcaacCACAUGCUUAu 2 11 1040 1065 [dm3:3R:10089591-10089616:-] 0.5531 141 7 -11.30 -0.4475 MIMAT0012213 dme-miR-2499 41737 trx augccugcaCUUACAGUAGGCGUa |||| :||||||| uugaacuaaGAAUAAUAUCCGCAa 2 16 1030 1053 [dm3:3R:10089603-10089626:-] 0.5531 155 7 -16.06 -1.1838 MIMAT0012217 dme-miR-2501* 41737 trx uuucUUUCAAACUAACGUUCUca | || | | ||||||| agucAUAG-UCCAAUGCAAGAua 3 20 229 250 [dm3:3R:10090406-10090427:-] 0.4313 129 0 -8.20 -0.1217 MIMAT0000113 dme-miR-8 41737 trx cuguAGAAAUGGACUGUCAUAAu || |: | | ||||||| aaacUCGAUGAC-GUCAGUAUUc 2 20 615 636 [dm3:3R:10090020-10090041:-] 0.4835 145 7 -8.95 -0.2818 MIMAT0000115 dme-miR-10-5p 41737 trx uuguUUAAGCCUAGAUGUCCCa |||| | :||||||| aaacAAUU---ACUUACAGGGg 2 19 839 857 [dm3:3R:10089799-10089817:-] 0.5531 146 7 -14.71 -0.5116 MIMAT0012531 dme-miR-10-3p 41737 trx uuUGGAGAGAUCUUG-GCUUAAac || | | | | |: |||||| guACAUAUAUUGCAUACGAAUUau 3 22 871 894 [dm3:3R:10089762-10089785:-] 0.5531 132 0 -6.55 -0.1282 MIMAT0000347 dme-miR-283 41737 trx ucUUAA-UGGUCGACUAUAAau |:|| | |||:||||||| aaAGUUAAACAGUUGAUAUUau 3 20 513 534 [dm3:3R:10090122-10090143:-] 0.6258 150 0 -15.13 -0.1005 MIMAT0000407 dme-miR-315 41737 trx cgAAAGACUCGUUGUUAGUUUu |||:|| |||||||| caUUUUUG---UUCAAUCAAAc 2 21 296 314 [dm3:3R:10090342-10090360:-] 0.4859 148 7 -10.97 -0.2983 MIMAT0000407 dme-miR-315 41737 trx cgaAAGACUCGUUG-UUA-GUUUu |||| | ||| ||| |||| agaUUCU-AUAAACAAAUACAAAu 2 20 744 766 [dm3:3R:10089890-10089912:-] 0.4835 120 0 -6.54 -0.8292 MIMAT0005472 dme-miR-375 41737 trx auUG-AAUUCGGUUUGCUU-GUUu || |||:|| |||||| ||| acACAUUAGGC--AACGAAGCAAa 2 21 563 584 [dm3:3R:10090072-10090093:-] 0.3595 128 0 -14.94 -0.3795 MIMAT0005478 dme-miR-964 41737 trx uuCAAUUCGAGGGG--AUAAGAUu ||| :||||||: ||||||| uaGUUCGGCUCCCUUGUAUUCUAc 2 21 1295 1318 [dm3:3R:10089338-10089361:-] 0.5241 171 7 -23.13 -0.2514 MIMAT0005492 dme-miR-976 41737 trx cgUAAC--UACUAUUGAUU-AGGUu |||| || :| ||||| |||| caAUUGUAAUUGU-ACUAACUCCAu 2 21 1158 1181 [dm3:3R:10089475-10089498:-] 0.4867 125 0 -11.59 -0.6289 MIMAT0005493 dme-miR-977 41737 trx aaUCUGUU--GCACUUAUAGAgu | ||:| : | ||||||| gcAUACGAAUUAUAAAUAUCUau 3 20 882 904 [dm3:3R:10089752-10089774:-] 0.5531 130 0 -7.24 -0.1404 MIMAT0005501 dme-miR-927 41737 trx ccAUUUCGCAUCCUUA-AGAUUu |:|| :| | |||| ||||| uuUGAA-UGCA-GAAUAUCUAAg 2 21 186 206 [dm3:3R:10090450-10090470:-] 0.4313 120 0 -7.34 -0.6014 MIMAT0005501 dme-miR-927 41737 trx ccAUUUCGCAUCCUUA-AGAUUu |:|| :| | |||| ||||| uuUGAA-UGCA-GAAUAUCUAAg 2 21 186 206 [dm3:3R:10090450-10090470:-] 0.4313 120 0 -7.34 -0.8831 MIMAT0005506 dme-miR-989 41737 trx caAGGUGAUGCAGUGUAGUGu | ||: || |:||||||| ggUACAUCAC-UUACAUCACa 2 20 278 297 [dm3:3R:10090359-10090378:-] 0.4586 157 7 -17.87 -1.0902 MIMAT0005519 dme-miR-999 41737 trx ucUGUGUCAGAAUGUCAAUUGu | ||| |||::||||||| ugAAACA--CUUGUAGUUAACg 2 21 415 434 [dm3:3R:10090222-10090241:-] 0.5127 161 7 -17.52 -0.3944 MIMAT0005019 dme-miR-1006 41737 trx gauacuUAUUCUUUA-GCUUAAau ||| : || |||||| guacauAUAUUGCAUACGAAUUau 3 18 871 894 [dm3:3R:10089762-10089785:-] 0.5531 128 0 -5.46 -0.1282

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score trx RAID00154613 dme-miR-972-3p miRNA MIMAT0005488 trx mRNA 41737 Prediction 0.1828 trx RAID00203236 dme-miR-977-3p miRNA MIMAT0005493 trx mRNA 41737 Prediction 0.1828 trx RAID00272045 dme-miR-927-5p miRNA MIMAT0005501 trx mRNA 41737 Prediction 0.1828 trx RAID00297970 dme-miR-1002-5p miRNA MIMAT0005483 trx mRNA 41737 Prediction 0.1828 trx RAID00382400 dme-miR-989-3p miRNA MIMAT0005506 trx mRNA 41737 Prediction 0.2202 trx RAID00431604 dme-miR-33-5p miRNA MIMAT0000342 trx mRNA 41737 Prediction 0.1828 trx RAID00657332 dme-miR-976-3p miRNA MIMAT0005492 trx mRNA 41737 Prediction 0.1828 trx RAID00700030 dme-miR-1006-3p miRNA MIMAT0005019 trx mRNA 41737 Prediction 0.1828 trx RAID00848790 dme-miR-375-3p miRNA MIMAT0005472 trx mRNA 41737 Prediction 0.1828 trx RAID00898008 dme-miR-263a-5p miRNA MIMAT0000319 trx mRNA 41737 Prediction 0.1828 trx RAID01041779 dme-miR-8-3p miRNA MIMAT0000113 trx mRNA 41737 Prediction 0.2381 trx RAID01117997 dme-miR-964-5p miRNA MIMAT0005478 trx mRNA 41737 Prediction 0.2381 trx RAID01133969 dme-miR-1013-3p miRNA MIMAT0005026 trx mRNA 41737 Prediction 0.1828 trx RAID01205569 dme-miR-11-3p miRNA MIMAT0000116 trx mRNA 41737 Prediction 0.1828 trx RAID01309127 dme-miR-283-5p miRNA MIMAT0000347 trx mRNA 41737 Prediction 0.2381 trx RAID01631207 dme-miR-10-5p miRNA MIMAT0000115 trx mRNA 41737 Prediction 0.2202 trx RAID01797111 dme-miR-315-5p miRNA MIMAT0000407 trx mRNA 41737 Prediction 0.2202 trx RAID01946957 dme-miR-252-5p miRNA MIMAT0005516 trx mRNA 41737 Prediction 0.1828 trx RAID01961746 dme-miR-962-5p miRNA MIMAT0005476 trx mRNA 41737 Prediction 0.1828 trx RAID01973485 dme-mir-10 miRNA MI0000130 trx mRNA 41737 Prediction 0.1828 trx RAID02079614 dme-miR-985-3p miRNA MIMAT0005502 trx mRNA 41737 Prediction 0.1828 trx RAID02172996 dme-miR-999-3p miRNA MIMAT0005519 trx mRNA 41737 Prediction 0.2381 trx RAID02249089 dme-miR-10-3p miRNA MIMAT0012531 trx mRNA 41737 Prediction 0.1828 trx RAID02276923 dme-miR-306-5p miRNA MIMAT0000393 trx mRNA 41737 Prediction 0.1828 trx RAID02820153 dme-miR-960-5p miRNA MIMAT0005474 trx mRNA 41737 Prediction 0.1828 trx RAID03404116 dme-miR-932-5p miRNA MIMAT0005479 trx mRNA 41737 Prediction 0.1828 trx RAID03584386 dme-mir-13b-1 miRNA MI0000134 trx mRNA 41737 Prediction 0.1828 trx RAID03680657 dme-mir-2a-1 miRNA MI0000117 trx mRNA 41737 Prediction 0.1828 trx RAID03797353 dme-miR-981-3p miRNA MIMAT0005497 trx mRNA 41737 Prediction 0.2202