DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 36497 drk auaGUAAAGUAUACGUUGCAUUUAUGu :||| :|||| |:| | |||||| aaaUAUUAUAUAU-CGAAGCAAAUACa 2 25 1358 1383 [dm3:2R:9383100-9383125:-] 0.5122 146 6 -13.11 -0.1134 MIMAT0000343 dme-miR-280 36497 drk auaguaaagUAUACGUUGCAUUUAUGu || | ::|: ||||||: aacaagcggAUUUUUGAUAUAAAUAUa 2 19 496 522 [dm3:2R:9383961-9383987:-] 0.5408 138 0 -7.25 -0.1439 MIMAT0000360 dme-miR-287 36497 drk cacGUUUGCUAAAAGUUG-UGu |:|:|| |||||||| || guuCGAGCGUUUUUCAACUACa 2 19 1228 1249 [dm3:2R:9383234-9383255:-] 0.5122 138 0 -20.17 -0.9124 MIMAT0000363 dme-miR-288 36497 drk guacUUUACUUUAGCUG-UACUUu ||| ||||: || ||||| aaacAAAACAAAUUCACUAUGAAa 2 20 721 744 [dm3:2R:9383739-9383762:-] 0.5408 131 0 -6.76 -0.9611 MIMAT0000364 dme-miR-289 36497 drk ucagcguccgagguGAAUUUAUAAAu :|||||||||| uaaaaaacacaaauUUUAAAUAUUUa 2 13 123 148 [dm3:2R:9384335-9384360:-] 0.4955 156 7 -9.23 -1.2178 MIMAT0000388 dme-miR-303 36497 drk uggucaaaggacacuUUGGAUUu ||||||| aauuaccaaccaaccAACCUAAu 2 9 679 701 [dm3:2R:9383782-9383804:-] 0.5408 140 7 -11.29 -0.3312 MIMAT0005464 dme-miR-iab-4as-3p 36497 drk auuUGCAUA-UGACU--UACAUAGg |: ||| | | | ||||||| cgcAUCUAUAAAUAAAUAUGUAUCu 2 20 874 898 [dm3:2R:9383585-9383609:-] 0.5408 145 7 -8.77 -0.9998 MIMAT0005473 dme-miR-959 36497 drk aaguAUUAU-GGGGGCU-ACUGUu ||||| | |:|| ||||| cguuUAAUAGCAACUGAGUGACAc 2 19 283 306 [dm3:2R:9384177-9384200:-] 0.4992 125 0 -12.92 -0.7454 MIMAT0005489 dme-miR-973 36497 drk uuuUAGCUUCA-AGUUGG-UGGUUGGu | |||| | ||||| ||||||| gauAACGAAUUACCAACCAACCAACCu 2 23 672 698 [dm3:2R:9383785-9383811:-] 0.5408 168 7 -24.18 -0.8715 MIMAT0005489 dme-miR-973 36497 drk uuuUAGCUUCA---AGUUG-GUGGU-UGGu || |||| || || :|||| ||| cauAUGCAAGUAUGUCUACAUACCAGACCa 2 23 445 474 [dm3:2R:9384009-9384038:-] 0.5200 120 0 -15.63 -0.5792 MIMAT0005495 dme-miR-979 36497 drk aaUCGGACUCAAGCCCUUCUu | |:|| |||||||| gaAUCUUGCAAACGGGAAGAa 2 20 1066 1086 [dm3:2R:9383397-9383417:-] 0.5478 151 7 -20.41 -0.7107 MIMAT0005502 dme-miR-985 36497 drk acgggcugguaaCCUUGUAAAc | ||||||| aaaugcuaaaacGAAACAUUUu 2 11 1312 1333 [dm3:2R:9383150-9383171:-] 0.5122 142 7 -8.13 -0.8002 MIMAT0005502 dme-miR-985 36497 drk acgggcugguaaccUUGUAAAc ||||||| gcaaacgggaagaaAACAUUUg 2 9 1073 1094 [dm3:2R:9383389-9383410:-] 0.5478 140 7 -13.51 -0.3839 MIMAT0005502 dme-miR-985 36497 drk acgggcugguaaccuUGUAAAc |||||| uauaucgaagcaaauACAUUUa 2 8 1366 1387 [dm3:2R:9383096-9383117:-] 0.5122 120 6 -8.47 -0.1395 MIMAT0005508 dme-miR-990 36497 drk ccgGUUGAGUCUUGC-CACUUa |: :||: |:|| ||||| gugCGUUUCGCAGCGAGUGAAc 2 19 628 649 [dm3:2R:9383834-9383855:-] 0.5408 122 0 -16.57 -0.2670 MIMAT0005022 dme-miR-1009 36497 drk gaCU-UUACAUUGUUAAAAACUCu || |:| | ::| |||||||| acGACAGUUUUGUACUUUUUGAGc 2 22 1519 1542 [dm3:2R:9382941-9382964:-] 0.5354 160 7 -8.91 -0.2590 MIMAT0005022 dme-miR-1009 36497 drk gaCUUUACAUUG-UUAAAAACUcu | || |:| :|||||||| uuGUAAACAAGCGGAUUUUUGAua 3 22 491 514 [dm3:2R:9383969-9383992:-] 0.5408 136 0 -7.64 -0.1447 MIMAT0011784 dme-miR-2279* 36497 drk uuaaaGUGUGU---GUCUAUAAAUu |||| | :| ||||||| aaaaaCACAAAUUUUAAAUAUUUAu 2 18 125 149 [dm3:2R:9384334-9384358:-] 0.4955 148 7 -8.09 -1.0840 MIMAT0011784 dme-miR-2279* 36497 drk uuaaAGUGUGUGUCUAUAAAUu | ::| |: ||||||| ccagUAGUAGCCGCAUAUUUAa 2 19 1581 1602 [dm3:2R:9382881-9382902:-] 0.5354 146 7 -6.97 -0.3466 MIMAT0011784 dme-miR-2279* 36497 drk uuaAAGUGUGUGUCUAUAA-AUu | :|:|:|:| ||||| || uuaUCUAUAUAUAAAUAUUAUAu 2 20 1346 1368 [dm3:2R:9383115-9383137:-] 0.5122 127 0 -6.82 -0.8771 MIMAT0012194 dme-miR-307-as* 36497 drk gguAGUGU-UGGAGGAACUCACu |:|:| | :| ||||||| uauUUAUAUAAUUGGUUGAGUGu 2 20 1159 1181 [dm3:2R:9383302-9383324:-] 0.5478 150 7 -14.51 -0.3766 MIMAT0012196 dme-miR-2489 36497 drk ugACGUUUAU-GUUGUAUGUUau | :||||| : |:|||||| auUUUAAAUAUUUAUAUACAAga 3 21 135 157 [dm3:2R:9384326-9384348:-] 0.5197 143 0 -10.95 -0.1173 MIMAT0012199 dme-miR-2492 36497 drk aaacuuucgagagcUGUUUUGUa |||||||| acguuuuauagaaaACAAAACAa 2 10 709 731 [dm3:2R:9383752-9383774:-] 0.5408 145 7 -8.00 -1.2351 MIMAT0012199 dme-miR-2492 36497 drk aaACUUUCGAGAGCU----GUUUUGUa | |||||| || :|||||| ucUCAAAGCUGAAGACAAUUAAAACAa 2 22 765 791 [dm3:2R:9383692-9383718:-] 0.5408 136 6 -12.12 -0.1160 MIMAT0012199 dme-miR-2492 36497 drk aaacUUUCG--AGAGCUGUU-UUGUa ||||: |:| |||| |||| auauAAAGUAAUUUAAACAACAACAa 2 20 1287 1312 [dm3:2R:9383171-9383196:-] 0.5122 122 0 -7.10 -1.0265 MIMAT0012199 dme-miR-2492 36497 drk aaacuuucgagagcugUUUUGUa |||||| aacaagaagaaacuaaAAAACAc 2 8 110 132 [dm3:2R:9384351-9384373:-] 0.4955 120 6 -6.99 -0.1267 MIMAT0012208 dme-miR-2497* 36497 drk uuGUUGAUGUAAAACGUUACGAAUg |||| | :|||||||| acCAACCAACCAACCUAAUGCUUAa 2 24 683 707 [dm3:2R:9383776-9383800:-] 0.5408 147 7 -12.29 -1.0190 MIMAT0012208 dme-miR-2497* 36497 drk uuGUUGAUGUAAAACGUUACG-AAUg ||||||||| |||| ||| uuCAACUACAUAACUAUAUGCAUUAa 2 24 1240 1265 [dm3:2R:9383218-9383243:-] 0.5122 131 0 -16.77 -1.0167 MIMAT0012210 dme-miR-2498* 36497 drk guUUUUAUUCGUAUUGUCGGAAAu || | |||: || ||||||| acAACACAAGUUUA--AGCCUUUa 2 23 192 213 [dm3:2R:9384270-9384291:-] 0.5439 159 7 -13.72 -0.9878 MIMAT0012215 dme-miR-2500 36497 drk gaCUCCAGGUG--UGUGUUUUAGg || | | |: | |||||||: cuGAAGACAAUUAAAACAAAAUUu 2 21 773 796 [dm3:2R:9383687-9383710:-] 0.5408 135 0 -10.33 -0.1260 MIMAT0000332 dme-miR-274 36497 drk uaAUGGGCAAUCACAGCCAGU-GUUUu || || || |||| ||| |||| ugUAACCAUUUUUGUC-AUCAGCAAAg 2 25 1188 1213 [dm3:2R:9383270-9383295:-] 0.5300 130 0 -13.74 -0.2723 MIMAT0000332 dme-miR-274 36497 drk uaaugggcaaucacagccaGUGUUUu |||||| acaagaagaaacuaaaaaaCACAAAu 2 8 111 136 [dm3:2R:9384347-9384372:-] 0.4955 120 6 -10.62 -0.1470 MIMAT0000335 dme-miR-219 36497 drk guucuuaacgcaaacCUGUUAGu ||||||: ugucucaaagcugaaGACAAUUa 2 9 763 785 [dm3:2R:9383698-9383720:-] 0.5408 124 0 -9.20 -0.1106 MIMAT0000338 dme-miR-277 36497 drk acagcauggucuaUCACGUAAAu | ||||||| agccuuuaagccgAAUGCAUUUu 2 11 206 228 [dm3:2R:9384255-9384277:-] 0.5439 142 7 -9.96 -0.7915 MIMAT0000347 dme-miR-283 36497 drk ucuUAAUGGUCGAC-UAUAAAu | || :||| | |||||| accAGUAGUAGCCGCAUAUUUa 2 19 1580 1601 [dm3:2R:9382882-9382903:-] 0.5354 126 6 -9.79 -0.5459 MIMAT0000347 dme-miR-283 36497 drk ucuuaauggucgacUAUAAAu |||||| aacacaaauuuuaaAUAUUUa 2 8 128 148 [dm3:2R:9384335-9384355:-] 0.4955 120 6 -3.01 -0.1848 MIMAT0000407 dme-miR-315 36497 drk cgaaagacUCGUUGU-UAGUUUu | ||||| |||||| cucauggaAACAACACAUCAAAa 2 15 1434 1456 [dm3:2R:9383027-9383049:-] 0.5544 126 6 -12.55 -0.9376 MIMAT0005472 dme-miR-375 36497 drk auUGAAUU--CGGUUUGC-UUGUUu || ||| |:|| || ||||| aaACAUAAAUUCUAAUCGUAACAAu 2 21 1601 1625 [dm3:2R:9382858-9382882:-] 0.5354 123 0 -8.89 -0.7624 MIMAT0005484 dme-miR-968 36497 drk guugGGAAAUUACCUAUGAUGAau |: | ||| ||||||| ugugCUAUAAAUUAUUACUACUac 3 21 1135 1158 [dm3:2R:9383325-9383348:-] 0.5478 136 0 -8.14 -0.1120 MIMAT0005490 dme-miR-974 36497 drk uuaUGAUGAAGAAACG-AGCGAa |:|| || ||||| ||||| uaaAUUAAUU-UUUGCAUCGCUg 2 20 831 852 [dm3:2R:9383631-9383652:-] 0.5408 133 0 -15.84 -0.6880 MIMAT0005501 dme-miR-927 36497 drk ccAUUUCGCAUCCUUAAGAUUu |||| | || |||||||| uuUAAA-CAUA--AAUUCUAAu 2 21 1598 1616 [dm3:2R:9382867-9382885:-] 0.5354 155 7 -5.66 -0.8246 MIMAT0005520 dme-miR-1000 36497 drk ugacgacacugUCCUGUUAua | |||||| ucucaaagcugAAGACAAUua 3 11 765 785 [dm3:2R:9383698-9383718:-] 0.5408 122 0 -9.97 -0.1095

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score drk RAID00066181 dme-miR-985-3p miRNA MIMAT0005502 drk mRNA 36497 Prediction 0.1828 drk RAID01469195 dme-miR-979-3p miRNA MIMAT0005495 drk mRNA 36497 Prediction 0.1828 drk RAID01815784 dme-miR-973-5p miRNA MIMAT0005489 drk mRNA 36497 Prediction 0.1828 drk RAID02336692 dme-miR-991-3p miRNA MIMAT0005509 drk mRNA 36497 Prediction 0.1828 drk RAID02372661 dme-miR-927-5p miRNA MIMAT0005501 drk mRNA 36497 Prediction 0.2202 drk RAID02501464 dme-miR-33-5p miRNA MIMAT0000342 drk mRNA 36497 Prediction 0.1828 drk RAID02621631 dme-miR-4-3p miRNA MIMAT0000109 drk mRNA 36497 Prediction 0.1828 drk RAID02633658 dme-miR-274-5p miRNA MIMAT0000332 drk mRNA 36497 Prediction 0.1828 drk RAID02739118 dme-miR-968-5p miRNA MIMAT0005484 drk mRNA 36497 Prediction 0.1828 drk RAID02915667 dme-miR-375-3p miRNA MIMAT0005472 drk mRNA 36497 Prediction 0.1828 drk RAID03149400 dme-miR-219-5p miRNA MIMAT0000335 drk mRNA 36497 Prediction 0.1828 drk RAID03211402 dme-miR-964-5p miRNA MIMAT0005478 drk mRNA 36497 Prediction 0.1828 drk RAID03409289 dme-miR-283-5p miRNA MIMAT0000347 drk mRNA 36497 Prediction 0.2381 drk RAID03559868 dme-miR-974-5p miRNA MIMAT0005490 drk mRNA 36497 Prediction 0.1828 drk RAID03726718 dme-miR-1009-3p miRNA MIMAT0005022 drk mRNA 36497 Prediction 0.1828 drk RAID03793362 dme-miR-1000-5p miRNA MIMAT0005520 drk mRNA 36497 Prediction 0.2202 drk RAID03896812 dme-miR-315-5p miRNA MIMAT0000407 drk mRNA 36497 Prediction 0.2202 drk RAID03985901 dme-miR-277-3p miRNA MIMAT0000338 drk mRNA 36497 Prediction 0.2455