DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 43651 wts caCGUUUGCUAAAAGUUGUGu ||::: || |||||||| acGCGGGGGAAAUUCAACACu 2 20 876 896 [dm3:3R:26615801-26615821:-] 0.3694 159 7 -17.61 -0.4160 MIMAT0000364 dme-miR-289 43651 wts ucagcguccgaggugaauuUAUAAAu |||||| acauacaaauaauauacauAUAUUUg 2 8 189 214 [dm3:3R:26616483-26616508:-] 0.5391 120 6 -6.81 -0.1265 MIMAT0005521 dme-miR-1001 43651 wts acuaggaaCCCUCAAAUGGGu | || ||||||| aacgagacGCGAAUUUACCCa 2 14 457 477 [dm3:3R:26616220-26616240:-] 0.3468 149 7 -13.36 -0.4417 MIMAT0011784 dme-miR-2279* 43651 wts uuaaAGUGUGUGUCUAUAAAUu | |:|:||| ||||||: caaaUAAUAUACAUAUAUUUGa 2 19 194 215 [dm3:3R:26616482-26616503:-] 0.5391 150 0 -12.54 -0.1831 MIMAT0011791 dme-miR-2283 43651 wts uaacagcauaaGUACUAUAAAAg :|| ||||||| uccacaacaaaUAU-AUAUUUUu 2 13 351 372 [dm3:3R:26616325-26616346:-] 0.4065 142 7 -3.75 -0.8658 MIMAT0011791 dme-miR-2283 43651 wts uaacagcAUAAGUACUAUAAAag ||| ||| |||||| caaauaaUAUACAU-AUAUUUga 3 17 194 215 [dm3:3R:26616482-26616503:-] 0.5391 138 0 -3.80 -0.1702 MIMAT0012194 dme-miR-307-as* 43651 wts ggUAGUGUUGGAGGAACUCACu || : ||| | ||||||| ggAUAGAAAC--CAUUGAGUGg 2 21 75 94 [dm3:3R:26616603-26616622:-] 0.5025 149 7 -16.15 -0.2100 MIMAT0012196 dme-miR-2489 43651 wts ugACGUUUAUGUUGUAUGU-UAu | ||||| ||:||||| || caUACAAAU--AAUAUACAUAUa 2 21 190 210 [dm3:3R:26616487-26616507:-] 0.5391 129 0 -11.23 -1.2507 MIMAT0012199 dme-miR-2492 43651 wts aaACUUUCGAGAGCUGUUUUGUa | |||| | :||||||| gcUCAAAG--CAAAGCAAAACAa 2 22 422 442 [dm3:3R:26616255-26616275:-] 0.5154 146 7 -10.48 -0.7292 MIMAT0012203 dme-miR-2494 43651 wts gaACAUUCACCUGUAAUGACCCUu | ||| | | | ||||||| aaUCUAAAUCUA-A--ACUGGGAg 2 23 659 679 [dm3:3R:26616018-26616038:-] 0.7475 141 7 -13.93 -1.0492 MIMAT0012208 dme-miR-2497* 43651 wts uuGUUGAUGUAAAACGUUACGAAUg :|: | |:|| |||||||| cgUAGGUUCGUUGGAAAAUGCUUAa 2 24 1118 1142 [dm3:3R:26615555-26615579:-] 0.4769 155 7 -14.15 -0.6039 MIMAT0012216 dme-miR-2501 43651 wts aaucggguccgugagGUUUGAAUg |||||||| ucccauccaaaagaaCAAACUUAg 2 10 773 796 [dm3:3R:26615901-26615924:-] 0.4317 145 7 -16.03 -0.1662 MIMAT0012216 dme-miR-2501 43651 wts aauCGGGUCCGUGAGGUU-UGAAUg || :|| | |:||| ||||| aacGCGGGGGAAAUUCAACACUUAu 2 22 875 899 [dm3:3R:26615798-26615822:-] 0.3694 129 0 -17.89 -0.2292 MIMAT0012531 dme-miR-10-3p 43651 wts uuUGGAGAGAUCUUGGCUUAAAc ||: | ||| ||||||| aaACUAAACGAGACGCGAAUUUa 2 22 451 473 [dm3:3R:26616224-26616246:-] 0.3468 153 7 -10.63 -0.1327 MIMAT0000332 dme-miR-274 43651 wts uaaugGGCAAUCA--CAGCCAGUGUUUu ::|||||| : |||||||| aaucaUUGUUAGUCAAAUAGUCACAAAa 2 22 44 71 [dm3:3R:26616626-26616653:-] 0.5869 156 7 -19.73 -0.7422 MIMAT0000340 dme-miR-133 43651 wts ugucgaccaacUUCCCCUGGUu || ||||||| guuagaauucaAAAGGGACCAa 2 12 378 399 [dm3:3R:26616298-26616319:-] 0.5154 147 7 -15.56 -1.1004 MIMAT0000347 dme-miR-283 43651 wts ucUUA-AUG---GUCGACUAUAAAu ||| ||| :| :|||||| | auAAUAUACAUAUAUUUGAUAUAUa 2 20 197 221 [dm3:3R:26616476-26616500:-] 0.5391 121 0 -6.12 -0.1022 MIMAT0000351 dme-miR-124 43651 wts gaaccGUAAGUGGCGCACGGAAu || | |:|:||||||| acaaaCAAACUCUGUGUGCCUUg 2 19 1282 1304 [dm3:3R:26615393-26615415:-] 0.4769 158 7 -22.50 -0.2308 MIMAT0000354 dme-miR-276b 43651 wts ucuCGUGC-CAUAAUUCA-AGGAu |:|:| ||| | ||| |||| cauGUAUGUGUAAUUAGUGUCCUg 2 20 689 712 [dm3:3R:26615985-26616008:-] 0.3879 126 0 -15.52 -0.2711 MIMAT0000356 dme-miR-285 43651 wts cgUGA-CUAAAGCUU------ACCACGAu ||| || ||||| ||||||| caACUGGAAAUCGAACCUUUCUGGUGCUc 2 21 397 425 [dm3:3R:26616272-26616300:-] 0.5154 146 7 -20.72 -0.2355 MIMAT0000362 dme-miR-263b 43651 wts caCUUAAGAGGGUCACG-GUUc ||| :|:|::|||| ||| ucGAACCUUUCUGGUGCUCAAa 2 20 407 428 [dm3:3R:26616269-26616290:-] 0.5154 127 0 -16.07 -0.2598 MIMAT0000362 dme-miR-263b 43651 wts cacUUAAGAGGGUCACGGUUc || |: :: | |||||| accAACUUGUUGAAUGCCAAa 2 19 829 849 [dm3:3R:26615848-26615868:-] 0.7886 122 6 -8.34 -0.2466 MIMAT0000390 dme-miR-304 43651 wts gaGUGUAAAUGUUUAACUCUAAu | |||| | :|||||||||| uuCCCAUUCA-GAAUUGAGAUUg 2 22 565 586 [dm3:3R:26616111-26616132:-] 0.4385 171 7 -17.97 -0.1696 MIMAT0005467 dme-miR-190 43651 wts guUGGUUCUUAUAGUUUGUAUAga || || ||||| |||||| auACAAAUAAUAU---ACAUAUau 3 23 191 211 [dm3:3R:26616486-26616506:-] 0.5391 142 0 -6.36 -0.1271 MIMAT0005487 dme-miR-971 43651 wts agugacauucuucaUUGUGGUu ||||||| cucuccaugugcccAACACCAa 2 9 9 30 [dm3:3R:26616667-26616688:-] 0.3584 140 7 -12.65 -0.2012 MIMAT0005514 dme-miR-995 43651 wts uucGGCUUAG-UACACCACGAu :|||| | | ||||||| aaaUCGAACCUUUCUGGUGCUc 2 19 404 425 [dm3:3R:26616272-26616293:-] 0.5154 153 7 -16.33 -0.2334 MIMAT0005518 dme-miR-998 43651 wts cucgaCUUAG-AGUACCACGAu ||| | |: ||||||| aaaucGAACCUUUCUGGUGCUc 2 17 404 425 [dm3:3R:26616272-26616293:-] 0.5154 151 7 -14.43 -0.2355 MIMAT0005016 dme-miR-1003 43651 wts gaCACUUAU-ACAUUUACACUCu | | || | |||||||||| ugGAGCCUAUUUUAAAUGUGAGa 2 21 1239 1261 [dm3:3R:26615436-26615458:-] 0.4769 159 7 -15.53 -1.0087 MIMAT0005017 dme-miR-1004 43651 wts gacacucccuucacUACACUCu ||||||| ggagccuauuuuaaAUGUGAGa 2 9 1240 1261 [dm3:3R:26615436-26615457:-] 0.4769 140 7 -12.79 -1.0201 MIMAT0005019 dme-miR-1006 43651 wts gauACUUAUUCUUUAGCUUAAAu | || :||| : ||||||| aacUAAACGAGACG-CGAAUUUa 2 21 452 473 [dm3:3R:26616224-26616245:-] 0.3468 154 7 -12.25 -0.1217

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score wts RAID00056290 dme-miR-133-3p miRNA MIMAT0000340 wts mRNA 43651 Prediction 0.2202 wts RAID00156253 dme-miR-998-3p miRNA MIMAT0005518 wts mRNA 43651 Prediction 0.2381 wts RAID00922040 dme-miR-285-3p miRNA MIMAT0000356 wts mRNA 43651 Prediction 0.2202 wts RAID00935200 dme-miR-932-5p miRNA MIMAT0005479 wts mRNA 43651 Prediction 0.1828 wts RAID01031492 dme-miR-263b-5p miRNA MIMAT0000362 wts mRNA 43651 Prediction 0.2381 wts RAID01120866 dme-miR-304-5p miRNA MIMAT0000390 wts mRNA 43651 Prediction 0.2202 wts RAID01289077 dme-miR-276b-3p miRNA MIMAT0000354 wts mRNA 43651 Prediction 0.1828 wts RAID01362240 dme-miR-973-5p miRNA MIMAT0005489 wts mRNA 43651 Prediction 0.1828 wts RAID01885714 dme-miR-995-3p miRNA MIMAT0005514 wts mRNA 43651 Prediction 0.2202 wts RAID02154770 dme-miR-274-5p miRNA MIMAT0000332 wts mRNA 43651 Prediction 0.2381 wts RAID02177053 dme-miR-971-3p miRNA MIMAT0005487 wts mRNA 43651 Prediction 0.2202 wts RAID02214782 dme-miR-87-3p miRNA MIMAT0000361 wts mRNA 43651 Prediction 0.2202 wts RAID02323676 dme-miR-1006-3p miRNA MIMAT0005019 wts mRNA 43651 Prediction 0.2202 wts RAID02337159 dme-miR-1014-3p miRNA MIMAT0005027 wts mRNA 43651 Prediction 0.2202 wts RAID02445156 dme-miR-375-3p miRNA MIMAT0005472 wts mRNA 43651 Prediction 0.2202 wts RAID02870008 dme-miR-190-5p miRNA MIMAT0005467 wts mRNA 43651 Prediction 0.1828 wts RAID02888609 dme-miR-1001-5p miRNA MIMAT0005521 wts mRNA 43651 Prediction 0.1828 wts RAID02932734 dme-miR-283-5p miRNA MIMAT0000347 wts mRNA 43651 Prediction 0.1828 wts RAID03106518 dme-miR-278-3p miRNA MIMAT0000339 wts mRNA 43651 Western Blot//Reporter Assay//RT-PCR 0.9526 wts RAID03161278 dme-miR-1004-3p miRNA MIMAT0005017 wts mRNA 43651 Prediction 0.2202 wts RAID03416357 dme-miR-124-3p miRNA MIMAT0000351 wts mRNA 43651 Prediction 0.2455 wts RAID03582337 dme-miR-1003-3p miRNA MIMAT0005016 wts mRNA 43651 Prediction 0.2202 wts RAID03870388 dme-miR-10-3p miRNA MIMAT0012531 wts mRNA 43651 Prediction 0.2202