DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 37837 Chi auagUAAAGUAUACGUUGCAUUUAUGu | | :|||| :|| || |||| aggaAAUGUAUAUAAGACAUACAUACa 2 24 89 115 [dm3:2R:19919212-19919238:-] 0.7158 135 0 -9.24 -0.3299 MIMAT0000343 dme-miR-280 37837 Chi auAGUA--AA-GUAUACGU---UGCAUUUAUgu |||| || |||:| | |: |||||| uuUCAUACUUGCAUGUAAAAAUAUUUAAAUAaa 3 26 43 75 [dm3:2R:19919252-19919284:-] 0.7841 134 0 -12.95 -0.5135 MIMAT0000364 dme-miR-289 37837 Chi ucAGCGUCCGAG-GUGAA--UUUAUAAAu |: || ||: ||: | |||||||| auUUUCAUACUUGCAUGUAAAAAUAUUUa 2 25 41 69 [dm3:2R:19919258-19919286:-] 0.7841 154 7 -9.34 -1.3487 MIMAT0000364 dme-miR-289 37837 Chi ucagcguccgaggUGAAUUUAUAAAu || | ||||||| --aacuuaauaaaACAU-AAUAUUUc 2 14 1 23 [dm3:2R:19919304-19919326:-] 0.7841 143 7 -5.04 -1.1874 MIMAT0005464 dme-miR-iab-4as-3p 37837 Chi auuuGC-AUAUGAC---UUACAUAGg || ||||:|| |||||||: auuuCGCUAUAUUGUCAAAUGUAUUu 2 19 19 44 [dm3:2R:19919283-19919308:-] 0.7841 144 0 -15.01 -0.3056 MIMAT0005464 dme-miR-iab-4as-3p 37837 Chi auUUGCAUAUGACUUACAUAgg || | || ||||||| ucAAGUUUUAGGAAAUGUAUau 3 21 80 101 [dm3:2R:19919226-19919247:-] 0.7158 132 0 -8.77 -0.2173 MIMAT0005488 dme-miR-972 37837 Chi cgGAUUUAUAAGCA-UAACAUGu :||||| | : | ||||||| uaUUAAAUCUAUAUAAUUGUACc 2 21 116 138 [dm3:2R:19919189-19919211:-] 0.6476 159 7 -8.72 -1.2618 MIMAT0005502 dme-miR-985 37837 Chi acGGGCUGGUAACCUUGUAAAc |::| ::| ||:|||| uaCUUGCAUGUAAAAAUAUUUa 2 21 48 69 [dm3:2R:19919258-19919279:-] 0.7841 128 0 -6.30 -0.3705 MIMAT0005509 dme-miR-991 37837 Chi ugAAAGGUUUGAUGUUGAAAuu || :||| |:|||||| uuUUAGUAAAACAUAACUUUua 3 21 237 258 [dm3:2R:19919069-19919090:-] 0.6299 140 0 -9.70 -0.1609 MIMAT0005026 dme-miR-1013 37837 Chi gcUCAAGCCGUA-UGAAAAUa ||| ||| ||||||| uuAGUAAAACAUAACUUUUAa 2 19 239 259 [dm3:2R:19919068-19919088:-] 0.6299 149 7 -7.75 -1.2914 MIMAT0011784 dme-miR-2279* 37837 Chi uuAAAGUGUGUGUCUAUAAAUu || ||:::| | ||||||| acUUGCAUGUAAAAAUAUUUAa 2 21 49 70 [dm3:2R:19919257-19919278:-] 0.7841 164 7 -9.44 -1.3539 MIMAT0011784 dme-miR-2279* 37837 Chi uuaaaGUGUGUGUCUAUAAAUu ||:|||:| ||||| | uaagaCAUACAUACAUAUUAAa 2 18 101 122 [dm3:2R:19919205-19919226:-] 0.6476 137 0 -12.66 -0.1116 MIMAT0011784 dme-miR-2279* 37837 Chi uuaaAGUGUGUGUCUAUAAAuu | | |||:| |||||| uuaaUAAAACAUA-AUAUUUcg 3 19 4 24 [dm3:2R:19919303-19919323:-] 0.7841 136 0 -5.41 -0.1928 MIMAT0011787 dme-miR-2280* 37837 Chi aguCAAUCGAACCUUCAUUUaa |||: :|| |||||| uguGUUGUUUU---AGUAAAac 3 20 230 248 [dm3:2R:19919079-19919097:-] 0.6401 127 0 -6.03 -0.2312 MIMAT0011791 dme-miR-2283 37837 Chi uaacagcauaaGUACUAUAAAag ||| |||||| acuuaauaaaaCAUAAUAUUUcg 3 13 2 24 [dm3:2R:19919303-19919325:-] 0.7841 132 0 -5.09 -0.2130 MIMAT0011791 dme-miR-2283 37837 Chi uaacAGCAUA-AGUACUAUAAAag |:| || | | |||||| auacUUGCAUGUAAAAAUAUUUaa 3 20 47 70 [dm3:2R:19919257-19919280:-] 0.7841 130 0 -4.08 -0.8230 MIMAT0011791 dme-miR-2283 37837 Chi uaACAGCAUAAGUACUAUAAAAg | | |:| | :|||||| gcUAUAUUGUCAAAUGUAUUUUc 2 22 24 46 [dm3:2R:19919281-19919303:-] 0.7841 129 6 -12.32 -0.6017 MIMAT0012199 dme-miR-2492 37837 Chi aaacuuucgaGAGCUGUUUUGUa ||: |:|||||| --------aaCUUAAUAAAACAu 2 14 1 15 [dm3:2R:19919312-19919326:-] 0.7841 137 6 -10.32 -0.1475 MIMAT0012199 dme-miR-2492 37837 Chi aaacuuucgAGAGCUGUUUUGUa |:|: ::|||||| aauguguugUUUUAGUAAAACAu 2 15 228 250 [dm3:2R:19919077-19919099:-] 0.6401 134 6 -11.09 -0.1682 MIMAT0012201 dme-miR-2493 37837 Chi ugcggAGCGUGU-UUAUGUGUGcc |||: :| ||||||| uuaagUCGUCUACUCUACACACua 3 19 139 162 [dm3:2R:19919165-19919188:-] 0.6439 129 0 -14.56 -0.3198 MIMAT0012212 dme-miR-2499* 37837 Chi cguaacgcgACUGCAGAUGCGUGc | || |:|| |||| aguaaaacaUAACUUUUAAGCACa 2 16 241 264 [dm3:2R:19919063-19919086:-] 0.6299 123 0 -8.16 -0.2775 MIMAT0012216 dme-miR-2501 37837 Chi aaucggguccgugagguUUGAAUg |||||| -----------------AACUUAa 2 8 1 7 [dm3:2R:19919320-19919326:-] 0.7841 120 6 -5.80 -0.7753 MIMAT0000109 dme-miR-4 37837 Chi agUUACCAACAGAUCGAAAUa || | || || ||:|||| auAAAGCUU-UCAAGUUUUAg 2 20 71 90 [dm3:2R:19919237-19919256:-] 0.7841 141 0 -4.63 -0.1220 MIMAT0000110 dme-miR-5 37837 Chi guaUAGUGUUGCUAGCAAGGAAa ||| |: ||:|| |||| uaaAUCUAUAUAAUUGUACCUUa 2 21 119 141 [dm3:2R:19919186-19919208:-] 0.6476 128 0 -10.38 -0.1265 MIMAT0000333 dme-miR-275 37837 Chi gcgcgcGAUGAAGU-CCAUGGAcu |||: | | |||||| uuaaauCUAUAUAAUUGUACCUua 3 18 118 141 [dm3:2R:19919186-19919209:-] 0.6476 128 0 -8.92 -0.3356 MIMAT0000338 dme-miR-277 37837 Chi acagcAUGGUCUAUCACGUAAAu ||::: | ||:|||| cgcuaUAUUGUCAAAUGUAUUUu 2 19 23 45 [dm3:2R:19919282-19919304:-] 0.7841 130 0 -5.25 -0.1187 MIMAT0000346 dme-miR-282 37837 Chi ugucUGUUUCGGAUCAU-CUCCGAUCUAa |:||| | || || |||| || cuuaAUAAAACAUAAUAUUUCGCUAUAUu 2 25 3 31 [dm3:2R:19919296-19919324:-] 0.7841 127 0 -8.14 -0.1143 MIMAT0000347 dme-miR-283 37837 Chi ucuuaauggucgacUAUAAAu |||||| cuuaauaaaacauaAUAUUUc 2 8 3 23 [dm3:2R:19919304-19919324:-] 0.7841 120 6 -1.78 -0.2169 MIMAT0000347 dme-miR-283 37837 Chi ucuuaauggucgacUAUAAAu |||||| acuugcauguaaaaAUAUUUa 2 8 49 69 [dm3:2R:19919258-19919278:-] 0.7841 120 6 -4.97 -0.7948 MIMAT0000350 dme-miR-34 37837 Chi guguuggucgauuggugUGACGGu |||||| cuucuguucuugucuugACUGCCu 2 8 192 215 [dm3:2R:19919112-19919135:-] 0.6401 120 6 -11.75 -0.1026 MIMAT0000351 dme-miR-124 37837 Chi gaaccguaaguggcgcACGGAAu |||||| cuguucuugucuugacUGCCUUg 2 8 195 217 [dm3:2R:19919110-19919132:-] 0.6401 120 6 -14.05 -0.1150 MIMAT0000352 dme-miR-79 37837 Chi uacgaaaccauuagaUCGAAAu |||||| aaaauauuuaaauaaAGCUUUc 2 8 60 81 [dm3:2R:19919246-19919267:-] 0.7841 120 6 -5.86 -0.7107 MIMAT0000393 dme-miR-306 37837 Chi aacucucagugAUU--CAUGGAcu ||| |||||| uuaaaucuauaUAAUUGUACCUua 3 12 118 141 [dm3:2R:19919186-19919209:-] 0.6476 122 0 -6.73 -0.3439 MIMAT0000408 dme-miR-316 37837 Chi gcGGUCAUUCGCCU-UUUUCUGu ::|| || :| | | ||||| uuUUAGGAAAUGUAUAUAAGACa 2 21 85 107 [dm3:2R:19919220-19919242:-] 0.7158 123 0 -10.48 -0.2408 MIMAT0000409 dme-miR-317 37837 Chi ugACCUAUGGUGGUCGACACAAgu || | | :||: |||||| cuUGCAAAGUACUUAAUGUGUUgu 3 23 214 237 [dm3:2R:19919090-19919113:-] 0.6401 134 0 -11.86 -0.2341 MIMAT0005467 dme-miR-190 37837 Chi guugGUUCU-UAUAGUUUGUAUAGa :|||| ||| || ||||||: uauaUAAGACAUA-CAUACAUAUUa 2 21 97 120 [dm3:2R:19919207-19919230:-] 0.6476 149 0 -10.91 -0.5060 MIMAT0005467 dme-miR-190 37837 Chi guugguucuuaUAGUUUGUAUAGa :| ||||||| | guguuguuuuaGUAAAACAUAACu 2 14 231 254 [dm3:2R:19919073-19919096:-] 0.6401 121 0 -6.19 -0.1449 MIMAT0005476 dme-miR-962 37837 Chi cugucgUAGUUAAA--GAGAUGGAAUa ||| || | :| ||||||| uauuaaAUCUAUAUAAUUGUACCUUAa 2 20 116 142 [dm3:2R:19919185-19919211:-] 0.6476 154 7 -9.81 -1.2483 MIMAT0005477 dme-miR-963 37837 Chi cuuugUUGGA-CUA-UAA-AUGGAAca ||:|| || ||| |||||| uauuaAAUCUAUAUAAUUGUACCUUaa 3 20 116 142 [dm3:2R:19919185-19919211:-] 0.6476 136 0 -9.87 -0.1944 MIMAT0005483 dme-miR-1002 37837 Chi agcgggaaacauaggugAUGAAUu |||||| uugacugccuugcaaagUACUUAa 2 8 206 229 [dm3:2R:19919098-19919121:-] 0.6401 120 6 -13.44 -0.2793 MIMAT0005516 dme-miR-252 37837 Chi gagGACGCCGUG-AUCAUGAAUc |||| ::| |||||||| ugaCUGCCUUGCAAAGUACUUAa 2 20 207 229 [dm3:2R:19919098-19919120:-] 0.6401 154 7 -17.26 -1.2875 MIMAT0005027 dme-miR-1014 37837 Chi gacguuuacuUUUACUUAAAa ||||| |||| cuauauugucAAAUGUAUUUu 2 12 25 45 [dm3:2R:19919282-19919302:-] 0.7841 123 0 -6.41 -0.1175 MIMAT0005030 dme-miR-1017 37837 Chi ccuacucAAACCCAUCUCGAAAg ||| || |||||| aaaaauaUUUAAAUAAAGCUUUc 2 17 59 81 [dm3:2R:19919246-19919268:-] 0.7841 124 6 -8.29 -0.7033

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G013506 Chi Drosophila melanogaster 37837

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Chi RAID00298601 dme-miR-306-5p miRNA MIMAT0000393 Chi mRNA 37837 Prediction 0.1828 Chi RAID00316708 dme-miR-1-3p miRNA MIMAT0000105 Chi mRNA 37837 Prediction 0.1828 Chi RAID00337167 dme-miR-5-5p miRNA MIMAT0000110 Chi mRNA 37837 Prediction 0.1828 Chi RAID00925301 dme-miR-34-5p miRNA MIMAT0000350 Chi mRNA 37837 Prediction 0.1828 Chi RAID02193255 dme-miR-275-3p miRNA MIMAT0000333 Chi mRNA 37837 Prediction 0.1828 Chi RAID02403541 dme-miR-1002-5p miRNA MIMAT0005483 Chi mRNA 37837 Prediction 0.1828 Chi RAID02628107 dme-miR-4-3p miRNA MIMAT0000109 Chi mRNA 37837 Prediction 0.1828 Chi RAID02807623 dme-miR-1014-3p miRNA MIMAT0005027 Chi mRNA 37837 Prediction 0.1828 Chi RAID03035449 dme-miR-317-3p miRNA MIMAT0000409 Chi mRNA 37837 Prediction 0.1828 Chi RAID03195976 dme-miR-79-3p miRNA MIMAT0000352 Chi mRNA 37837 Prediction 0.1828 Chi RAID03386389 dme-miR-190-5p miRNA MIMAT0005467 Chi mRNA 37837 Prediction 0.1828 Chi RAID03418521 dme-miR-283-5p miRNA MIMAT0000347 Chi mRNA 37837 Prediction 0.1828 Chi RAID03478145 dme-miR-316-5p miRNA MIMAT0000408 Chi mRNA 37837 Prediction 0.1828 Chi RAID03647073 dme-miR-963-5p miRNA MIMAT0005477 Chi mRNA 37837 Prediction 0.1828 Chi RAID03735247 dme-miR-14-3p miRNA MIMAT0000120 Chi mRNA 37837 Prediction 0.1828 Chi RAID03741078 dme-miR-1017-3p miRNA MIMAT0005030 Chi mRNA 37837 Prediction 0.1828 Chi RAID03853236 dme-miR-282-5p miRNA MIMAT0000346 Chi mRNA 37837 Prediction 0.1828 Chi RAID03898672 dme-miR-124-3p miRNA MIMAT0000351 Chi mRNA 37837 Prediction 0.1828 Chi RAID04032354 dme-miR-277-3p miRNA MIMAT0000338 Chi mRNA 37837 Prediction 0.1828 Chi RAID04049003 dme-miR-252-5p miRNA MIMAT0005516 Chi mRNA 37837 Prediction 0.1828 Chi RAID04052278 dme-miR-962-5p miRNA MIMAT0005476 Chi mRNA 37837 Prediction 0.1828