DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 39133 UbcD4 auAGUAAAGUAUACGUUGCAUUUAUgu | | || ||| :|| |||||| guUAAGUUAAUAAAUAA-AUAAAUAaa 3 26 482 507 [dm3:3L:9693311-9693336:+] 0.5132 139 0 -3.74 -0.4889 MIMAT0000364 dme-miR-289 39133 UbcD4 ucagcguccgaggugaaUUUAUAAau ||||||| aauaaauaaauaaauaaAAAUAUUaa 3 10 490 515 [dm3:3L:9693319-9693344:+] 0.5132 125 0 -4.93 -0.3923 MIMAT0005521 dme-miR-1001 39133 UbcD4 acuaggaacCCUCAAAUGGGu | | ||||||| auggaaaauGUAAUUUACCCu 2 13 607 627 [dm3:3L:9693436-9693456:+] 0.4873 144 7 -9.06 -1.1220 MIMAT0011784 dme-miR-2279* 39133 UbcD4 uuaaaGUGUGUGUCUA-UAAAUu || ||| | || ||||| aaacaCAAACAAAAAUGAUUUAc 2 18 400 422 [dm3:3L:9693229-9693251:+] 0.5035 125 0 -6.94 -1.1819 MIMAT0011787 dme-miR-2280* 39133 UbcD4 aguCAA-UCGAACCUUCAUUUAa ||| ||:| || ||||| ugcGUUAAGUUAAUAAAUAAAUa 2 20 479 501 [dm3:3L:9693308-9693330:+] 0.5132 126 0 -3.73 -0.1057 MIMAT0011787 dme-miR-2280* 39133 UbcD4 agucaaucgaaccuuCAUUUAa |||||| caccaauauauuuucGUAAAUc 2 8 120 141 [dm3:3L:9692949-9692970:+] 0.5029 120 6 -2.00 -0.1041 MIMAT0011791 dme-miR-2283 39133 UbcD4 uaacagcauaaGUACUAUAAAAg || ||||||| cacucacgcacCAAUAUAUUUUc 2 13 112 134 [dm3:3L:9692941-9692963:+] 0.5029 144 7 -8.31 -0.6597 MIMAT0012199 dme-miR-2492 39133 UbcD4 aaacUUUCGAGAGCUGUUUUGUa ||| : |: |||||||| aacaAAAAUGAUUUACAAAACAa 2 20 407 429 [dm3:3L:9693236-9693258:+] 0.5035 155 7 -7.42 -1.2892 MIMAT0012215 dme-miR-2500 39133 UbcD4 gacuCCAGGUG-UGUGUUUUAgg | |::|| | ||||||| aaauGAUUUACAAAACAAAAUaa 3 19 412 434 [dm3:3L:9693241-9693263:+] 0.5035 137 0 -10.32 -0.1127 MIMAT0012215 dme-miR-2500 39133 UbcD4 gacuccaggugUGUGUUUUAGg | |:|||||| ugccaaaauugAAAUAAAAUCc 2 12 698 719 [dm3:3L:9693527-9693548:+] 0.4873 131 6 -12.81 -0.1232 MIMAT0012216 dme-miR-2501 39133 UbcD4 aaucgggUCCGUGAGGUUUGAAUg || :|| |||||||| gugaagaAGAGGCUGCAAACUUAa 2 18 549 572 [dm3:3L:9693378-9693401:+] 0.4873 157 7 -16.16 -0.6009 MIMAT0000114 dme-miR-9a 39133 UbcD4 aguaugUCGAUCUAUUGGUUUcu | :|| | ||||||| uuggugAUUUACA-AACCAAAua 3 18 726 747 [dm3:3L:9693555-9693576:+] 0.4873 131 0 -5.57 -0.1084 MIMAT0000332 dme-miR-274 39133 UbcD4 uaaugggcaaucacagccaGUGUUUu |||||| uuucaagcuuaaacuaaaaCACAAAc 2 8 384 409 [dm3:3L:9693213-9693238:+] 0.4909 120 6 -9.93 -0.2271 MIMAT0000362 dme-miR-263b 39133 UbcD4 cacuuaAGA-GGGUCACGGUUc ||| :|:| |||||| uaaggcUCUGUCUAAUGCCAAa 2 16 683 704 [dm3:3L:9693512-9693533:+] 0.4873 126 6 -12.77 -0.1300 MIMAT0000389 dme-miR-31b 39133 UbcD4 gucGAUAAGGC-UGUAG-AACGGu :|| | :| ||||| ||||| ugaUUAAUGUGCACAUCUUUGCCg 2 20 207 230 [dm3:3L:9693036-9693059:+] 0.5118 126 0 -17.74 -0.3337 MIMAT0000392 dme-miR-9c 39133 UbcD4 agaugUCGAUCUUAUGGUUUcu | :|| || |||||| uggugAUUUACAA-ACCAAAua 3 18 727 747 [dm3:3L:9693556-9693576:+] 0.4873 131 0 -5.82 -0.1003 MIMAT0000395 dme-miR-9b 39133 UbcD4 guaugUCGAUUUUAGUGGUUUcu | :|| || |||||| uggugAUUUACAA--ACCAAAua 3 19 727 747 [dm3:3L:9693556-9693576:+] 0.4873 127 0 -4.59 -0.1003 MIMAT0000400 dme-miR-31a 39133 UbcD4 agucgaUACGGCUGUAG-AACGGu |||: ||||| ||||| ugauuaAUGUGCACAUCUUUGCCg 2 18 207 230 [dm3:3L:9693036-9693059:+] 0.5118 129 0 -19.42 -0.3282 MIMAT0000403 dme-miR-311 39133 UbcD4 aguccgGCCACUUACACGU-UAu :| | |||||||| || uuauuaUGAUUAAUGUGCACAUc 2 17 201 223 [dm3:3L:9693030-9693052:+] 0.5118 124 0 -8.95 -0.6099 MIMAT0005492 dme-miR-976 39133 UbcD4 cguaacuacuAUUGAUUAGGUu |: :||||||| cuauaauucuUGUUUAAUCCAu 2 13 657 678 [dm3:3L:9693486-9693507:+] 0.4873 144 7 -9.81 -1.1344 MIMAT0005492 dme-miR-976 39133 UbcD4 cgUAACUACUAUUGAUUAGGUu ||||| ||| |||||| aaAUUGA-AAUA--AAAUCCAa 2 21 703 721 [dm3:3L:9693532-9693550:+] 0.4873 123 6 -11.20 -0.1543 MIMAT0005519 dme-miR-999 39133 UbcD4 ucUGUGUCAGAAUGUCAAUUGu | |: | ||| ||||||: guAAAUUGCGUUA-AGUUAAUa 2 21 473 493 [dm3:3L:9693302-9693322:+] 0.5132 134 0 -8.64 -0.3328 MIMAT0005024 dme-miR-1011 39133 UbcD4 gacgcucgcuaaaCUUGGUUAUu | ||||||| cuuguacacucacGCACCAAUAu 2 11 106 128 [dm3:3L:9692935-9692957:+] 0.5029 142 7 -7.27 -0.5508 MIMAT0005024 dme-miR-1011 39133 UbcD4 gacgcUCGCUAAA--CUUGG-UUAUu :|:||||| |||| |||| uucuuGGUGAUUUACAAACCAAAUAa 2 19 723 748 [dm3:3L:9693552-9693577:+] 0.4873 125 0 -15.06 -1.0681 MIMAT0005027 dme-miR-1014 39133 UbcD4 gacgUUUA-CUUUUAC-UUAAAa :||| ||||||| ||||| ugaaGAAUGGAAAAUGUAAUUUa 2 18 601 623 [dm3:3L:9693430-9693452:+] 0.4873 136 0 -8.84 -0.7782

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubc4 RAID00000553 dme-miR-14-3p miRNA MIMAT0000120 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID00235155 dme-miR-277-3p miRNA MIMAT0000338 Ubc4 mRNA 39133 Prediction 0.2202 Ubc4 RAID00489778 dme-miR-999-3p miRNA MIMAT0005519 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID00690413 dme-miR-263b-5p miRNA MIMAT0000362 Ubc4 mRNA 39133 Prediction 0.2202 Ubc4 RAID00774662 dme-miR-9b-5p miRNA MIMAT0000395 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID00841810 dme-miR-31b-5p miRNA MIMAT0000389 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID01184485 dme-miR-1001-5p miRNA MIMAT0005521 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID01600840 dme-miR-976-3p miRNA MIMAT0005492 Ubc4 mRNA 39133 Prediction 0.2202 Ubc4 RAID02211099 dme-miR-9c-5p miRNA MIMAT0000392 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID02374330 dme-miR-1011-3p miRNA MIMAT0005024 Ubc4 mRNA 39133 Prediction 0.2202 Ubc4 RAID02643392 dme-miR-972-3p miRNA MIMAT0005488 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID02820370 dme-miR-31a-5p miRNA MIMAT0000400 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID02852862 dme-miR-274-5p miRNA MIMAT0000332 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID02958399 dme-miR-9a-5p miRNA MIMAT0000114 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID03367547 dme-miR-282-5p miRNA MIMAT0000346 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID03891531 dme-miR-1014-3p miRNA MIMAT0005027 Ubc4 mRNA 39133 Prediction 0.1828 Ubc4 RAID03952069 dme-miR-311-3p miRNA MIMAT0000403 Ubc4 mRNA 39133 Prediction 0.1828