DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 42435 Elongin-B auaguaaagUAUACGUUGCAUUUAUGu || ||: : | |||||| uuuauacgaAUUUGUUGAGAAAAUACa 2 19 412 438 [dm3:3R:16403962-16403988:-] 0.5980 126 6 -8.80 -0.1076 MIMAT0000364 dme-miR-289 42435 Elongin-B ucAGCGUCCGAGGUGAAUUUAUAAAu |||:: | | : |:||||||| cuUCGUGAG--CAGAGUGAAUAUUUa 2 25 509 532 [dm3:3R:16403868-16403891:-] 0.5980 149 7 -14.16 -0.8867 MIMAT0010206 dme-miR-995* 42435 Elongin-B gcgucgaggguguauUAAGCCc |||||| aaugggauugauaauAUUCGGc 2 8 347 368 [dm3:3R:16404032-16404053:-] 0.5980 120 6 -10.85 -0.2158 MIMAT0005521 dme-miR-1001 42435 Elongin-B acuaggaacccUCAAAUGGGu | ||||||| auucggcuuuaAUUUUACCCu 2 11 362 382 [dm3:3R:16404018-16404038:-] 0.5980 142 7 -9.84 -1.1940 MIMAT0005022 dme-miR-1009 42435 Elongin-B gaCUUUACAU-UG-UUAAA-AACUCu ||||| || || ||||| ||||| auGAAAUUUAUACGAAUUUGUUGAGa 2 22 406 431 [dm3:3R:16403969-16403994:-] 0.5980 143 0 -14.35 -1.3019 MIMAT0011784 dme-miR-2279* 42435 Elongin-B uuaAAGUGUGUGUC-----UAUAAAUu |||::: :||| ||||||| uccUUCGUGAGCAGAGUGAAUAUUUAa 2 20 507 533 [dm3:3R:16403867-16403893:-] 0.5980 146 7 -11.24 -1.1136 MIMAT0011791 dme-miR-2283 42435 Elongin-B uaacAGCAUAA-GUACUAUAAAAg || ||| :|| ||| ||| gggaUCUAAUUAUAUUAUAAUUUa 2 20 542 565 [dm3:3R:16403835-16403858:-] 0.5980 126 0 -0.48 -0.2161 MIMAT0011791 dme-miR-2283 42435 Elongin-B uaacagcauaaguacuAUAAAAg |||||| uuuauaaucaaaucauUAUUUUu 2 8 562 584 [dm3:3R:16403816-16403838:-] 0.5980 120 6 -4.09 -0.2030 MIMAT0012198 dme-miR-2491 42435 Elongin-B ucGUUGACGUUUCCGUUGUCGc || | |||| ||||||| caCAUCAUCAAAAUCAACAGCa 2 21 62 83 [dm3:3R:16404317-16404338:-] 0.4883 160 7 -13.93 -1.1073 MIMAT0012199 dme-miR-2492 42435 Elongin-B aaacuuucgagagcugUUUUGUa |||||| aauacacaaagucauaAAAACAa 2 8 433 455 [dm3:3R:16403945-16403967:-] 0.5980 120 6 -5.06 -0.1823 MIMAT0012215 dme-miR-2500 42435 Elongin-B gacuccagGUGU-GU-GUUUUAGg |||| || ||||||| gcagcaaaCACAUCAUCAAAAUCa 2 15 54 77 [dm3:3R:16404323-16404346:-] 0.4883 152 7 -14.04 -1.0991 MIMAT0000109 dme-miR-4 42435 Elongin-B agUUACCA--ACAGAUCGAAAUa | || | | |: :|||||| ggAUUGAUAAUAUUCGGCUUUAa 2 20 351 373 [dm3:3R:16404027-16404049:-] 0.5980 130 6 -6.88 -0.1934 MIMAT0012531 dme-miR-10-3p 42435 Elongin-B uuuggagAGAUCUUGGCUUAAAc |:|| | ||||||| aaugaaaUUUAUA--CGAAUUUg 2 17 405 425 [dm3:3R:16403975-16403995:-] 0.5980 145 7 -12.05 -1.1291 MIMAT0000332 dme-miR-274 42435 Elongin-B uaaugggcaaucacagccaGUGUUUu |||||| cgaauuuguugagaaaauaCACAAAg 2 8 418 443 [dm3:3R:16403957-16403982:-] 0.5980 120 6 -13.14 -0.1711 MIMAT0000338 dme-miR-277 42435 Elongin-B acagcaUGGUCUAUCACGUAAAu :|:| ||| ||||||| gcaauaGCUAAAUA-UGCAUUUu 2 18 264 285 [dm3:3R:16404115-16404136:-] 0.5980 155 7 -9.97 -0.9656 MIMAT0000392 dme-miR-9c 42435 Elongin-B agAUGUCGAUCUUAUG-GUUUCu |:: | | ||||| ||||| uuUGUUGAGAAAAUACACAAAGu 2 21 422 444 [dm3:3R:16403956-16403978:-] 0.5980 124 0 -10.34 -1.1549 MIMAT0000395 dme-miR-9b 42435 Elongin-B guAUGUCGAUUUUAGUG-GUUUCu |:: | ||||| || ||||| uuUGUUGAGAAAAU-ACACAAAGu 2 22 422 444 [dm3:3R:16403956-16403978:-] 0.5980 123 0 -11.12 -1.1372 MIMAT0000407 dme-miR-315 42435 Elongin-B cgaAAGACUCGUUGUUAGUUUu || | | : |:||||||| auaUUAUAAUUUAUAAUCAAAu 2 20 553 574 [dm3:3R:16403826-16403847:-] 0.5980 155 7 -7.60 -1.2838 MIMAT0000412 dme-miR-iab-4-5p 42435 Elongin-B aguccuauguaagucAUAUGCa |||||| cuuuuuaaugaaauuUAUACGa 2 8 399 420 [dm3:3R:16403980-16404001:-] 0.5980 120 6 -5.25 -0.3184 MIMAT0005472 dme-miR-375 42435 Elongin-B auugAAUUCGGUUUGCUUGUUu |||| || |||||| guugUUAAUAGCAAGGAACAAu 2 19 288 309 [dm3:3R:16404091-16404112:-] 0.5980 126 6 -8.45 -0.1555 MIMAT0005472 dme-miR-375 42435 Elongin-B auugaauUCGGUUUGCU-UGUUu ||| || ||| |||| cagcagcAGCAAAUCGAGACAAa 2 16 79 101 [dm3:3R:16404299-16404321:-] 0.4883 123 0 -11.04 -0.9814 MIMAT0005490 dme-miR-974 42435 Elongin-B uuaUGAUGAAGA-AACGAGCGAa :||| ||| | ||||||| uccGCUAACUCUGUCGCUCGCUu 2 20 107 129 [dm3:3R:16404271-16404293:-] 0.4883 158 7 -19.97 -0.2480 MIMAT0005019 dme-miR-1006 42435 Elongin-B gaUACUUAUUCUUUAGCUUAAAu ||||| | | ||||||| uaAUGAA-AUUUAUACGAAUUUg 2 22 404 425 [dm3:3R:16403975-16403996:-] 0.5980 151 7 -10.89 -1.1473 MIMAT0005027 dme-miR-1014 42435 Elongin-B gacgUUUACUUUUACUUAAAa |||| | | |||||| aaugAAAUUUAUACGAAUUUg 2 18 405 425 [dm3:3R:16403975-16403995:-] 0.5980 129 6 -5.34 -0.1823

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score EloB RAID00120078 dme-miR-310-3p miRNA MIMAT0000402 EloB mRNA 42435 Prediction 0.1828 EloB RAID00178546 dme-miR-9b-5p miRNA MIMAT0000395 EloB mRNA 42435 Prediction 0.1828 EloB RAID00370363 dme-miR-315-5p miRNA MIMAT0000407 EloB mRNA 42435 Prediction 0.2202 EloB RAID00567777 dme-miR-1001-5p miRNA MIMAT0005521 EloB mRNA 42435 Prediction 0.1828 EloB RAID00576945 dme-miR-92b-3p miRNA MIMAT0000358 EloB mRNA 42435 Prediction 0.1828 EloB RAID01576018 dme-miR-9c-5p miRNA MIMAT0000392 EloB mRNA 42435 Prediction 0.1828 EloB RAID01629544 dme-miR-313-3p miRNA MIMAT0000405 EloB mRNA 42435 Prediction 0.1828 EloB RAID01753919 dme-miR-iab-4-5p miRNA MIMAT0000412 EloB mRNA 42435 Prediction 0.1828 EloB RAID01835771 dme-miR-4-3p miRNA MIMAT0000109 EloB mRNA 42435 Prediction 0.2202 EloB RAID01854024 dme-miR-10-3p miRNA MIMAT0012531 EloB mRNA 42435 Prediction 0.1828 EloB RAID02206405 dme-miR-274-5p miRNA MIMAT0000332 EloB mRNA 42435 Prediction 0.1828 EloB RAID02322614 dme-mir-iab-4 miRNA MI0000432 EloB mRNA 42435 Prediction 0.1828 EloB RAID02488163 dme-miR-312-3p miRNA MIMAT0000404 EloB mRNA 42435 Prediction 0.1828 EloB RAID02923571 dme-miR-375-3p miRNA MIMAT0005472 EloB mRNA 42435 Prediction 0.1828 EloB RAID03071707 dme-miR-974-5p miRNA MIMAT0005490 EloB mRNA 42435 Prediction 0.2202 EloB RAID03270153 dme-miR-1014-3p miRNA MIMAT0005027 EloB mRNA 42435 Prediction 0.1828 EloB RAID03361127 dme-miR-311-3p miRNA MIMAT0000403 EloB mRNA 42435 Prediction 0.1828 EloB RAID03427924 dme-miR-1006-3p miRNA MIMAT0005019 EloB mRNA 42435 Prediction 0.2202 EloB RAID03669536 dme-miR-277-3p miRNA MIMAT0000338 EloB mRNA 42435 Prediction 0.2381 EloB RAID03712668 dme-miR-92a-3p miRNA MIMAT0000334 EloB mRNA 42435 Prediction 0.1828