DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 44437 sec13 gccccgcUCUCUUACUAUUCc | || || ||||| aaaaauaAUAGUAUAAUAAGa 2 15 251 271 [dm3:3R:19184154-19184174:+] 0.4250 122 0 -2.67 -0.1065 MIMAT0000343 dme-miR-280 44437 sec13 auAGUAAAGUA-UACGUUGCAUUUAUgu | || :|| || :|: |||||| aaUAAUAGUAUAAUAAGAUUUAAAUAau 3 26 254 281 [dm3:3R:19184157-19184184:+] 0.4250 136 0 -3.87 -0.1253 MIMAT0000343 dme-miR-280 44437 sec13 auaguaaaGUAUACGU-UGCAUUUAUGu :|||| :| || |||||| uuuacaaaUAUAUAUAUAC-GAAAUACu 2 20 49 75 [dm3:3R:19183952-19183978:+] 0.5098 124 6 -11.12 -0.1292 MIMAT0005491 dme-miR-975 44437 sec13 uauGUCCUACAUCCUUCACAAau |: |:| || ||||||| aguCGUGGU-UA-AAAGUGUUac 3 21 28 48 [dm3:3R:19183931-19183951:+] 0.5613 128 0 -9.00 -0.1333 MIMAT0005509 dme-miR-991 44437 sec13 ugaaAGGUUUGAUGUUGAAAUu |: ||| |:: |||||| guggUUAAAAGUGUUACUUUAc 2 19 32 53 [dm3:3R:19183935-19183956:+] 0.5613 130 6 -5.11 -0.1884 MIMAT0005018 dme-miR-1005 44437 sec13 gacgcUUAAUUUCUAAGGUcu |: ||| |||||| cauacAGAUAA--AUUCCAaa 3 17 316 334 [dm3:3R:19184219-19184237:+] 0.3965 125 0 -6.07 -0.1597 MIMAT0005026 dme-miR-1013 44437 sec13 gcucAAGCCGUAUGA-AAAUa | || ||||| |||| uauaUACGAAAUACUAUUUAa 2 17 61 81 [dm3:3R:19183964-19183984:+] 0.5098 120 0 -7.91 -1.1182 MIMAT0011784 dme-miR-2279* 44437 sec13 uuAAAGUGUGUGUCUAUAAAUu |||:|: || | ||||||: agUUUUAU-CAAAUAUAUUUGc 2 21 208 228 [dm3:3R:19184111-19184131:+] 0.3957 146 0 -8.23 -0.1058 MIMAT0011784 dme-miR-2279* 44437 sec13 uuAAAGUGUGU-GUCUAUAAAUu || :| ::| :| :|||||| aaUUGUAAGUAGUAUGUAUUUAa 2 21 230 252 [dm3:3R:19184133-19184155:+] 0.4277 135 6 -5.63 -0.2661 MIMAT0011784 dme-miR-2279* 44437 sec13 uuaaagugugugucuAUAAAUu |||||| auauauacgaaauacUAUUUAa 2 8 60 81 [dm3:3R:19183963-19183984:+] 0.5098 120 6 -9.38 -0.1615 MIMAT0011788 dme-miR-2281* 44437 sec13 aacGUAGACGUCG--ACGUCUAUUa :||:| :| | | ||||||| uauUAUUUUUAACCAUACAGAUAAa 2 21 303 327 [dm3:3R:19184206-19184230:+] 0.3965 151 7 -10.54 -1.2475 MIMAT0011789 dme-miR-2281 44437 sec13 cguuaugacgucUAUGUCUAu |||||||| uuauuuuuaaccAUACAGAUa 2 10 305 325 [dm3:3R:19184208-19184228:+] 0.3965 145 7 -10.86 -1.1937 MIMAT0011791 dme-miR-2283 44437 sec13 uaaCAGCAUAAGUACUAUAAAag ||: ||| | |||||| uaaGUUUUAUCAAAUAUAUUUgc 3 21 206 228 [dm3:3R:19184109-19184131:+] 0.3957 136 0 -4.21 -0.1047 MIMAT0012199 dme-miR-2492 44437 sec13 aaacuuucgagagcuGUUUUGua |||||| cauacagauaaauucCAAAACua 3 9 316 338 [dm3:3R:19184219-19184241:+] 0.3965 120 0 -4.76 -0.1199 MIMAT0012207 dme-miR-2496 44437 sec13 auacgcacacacucaCGGGGCg |||||| -----------gccaGCCCCGa 2 8 1 11 [dm3:3R:19183904-19183914:+] 0.6127 120 6 -14.68 -0.1651 MIMAT0012216 dme-miR-2501 44437 sec13 aaucggguccgugAGGUUUGAAUg |:|||||||| uaaccaaauuuuaUUCAAACUUAu 2 12 282 305 [dm3:3R:19184185-19184208:+] 0.3934 151 7 -14.75 -0.9482 MIMAT0012216 dme-miR-2501 44437 sec13 aaucggguccgUGAGG-UUUGAAUg |:||| ||||| | cauacagauaaAUUCCAAAACUAAa 2 14 316 340 [dm3:3R:19184219-19184243:+] 0.3965 120 0 -12.94 -0.1167 MIMAT0000114 dme-miR-9a 44437 sec13 agUAUGUCGAUCUAUUGGUUUcu || :| || |||||||| agAUUUAAAUAAUUAACCAAAuu 3 22 269 291 [dm3:3R:19184172-19184194:+] 0.3903 141 0 -7.08 -0.1515 MIMAT0000392 dme-miR-9c 44437 sec13 agaugucgaUCUUA--UGGUUUcu | ||| |||||| aagauuuaaAUAAUUAACCAAAuu 3 14 268 291 [dm3:3R:19184171-19184194:+] 0.3903 124 0 -5.77 -0.1515 MIMAT0000395 dme-miR-9b 44437 sec13 guaUGUCGAUU--UUAG-UGGUUUcu | | :||| |||: |||||| auaAGAUUUAAAUAAUUAACCAAAuu 3 21 266 291 [dm3:3R:19184169-19184194:+] 0.3903 134 0 -6.39 -0.1501 MIMAT0000407 dme-miR-315 44437 sec13 cgAAAGACUCGUUGUUAGUUUu |||:| ||: : |||||| uuUUUUUAAGU-UUUAUCAAAu 2 21 200 220 [dm3:3R:19184103-19184123:+] 0.3957 126 6 -8.45 -0.1130 MIMAT0000412 dme-miR-iab-4-5p 44437 sec13 aguccuauguaagucAUAUGCa |||||| cuuuacaaauauauaUAUACGa 2 8 48 69 [dm3:3R:19183951-19183972:+] 0.5098 120 6 -9.51 -0.3713 MIMAT0005501 dme-miR-927 44437 sec13 ccaUUUCGCA-UCCUUAAGAUUu ||| : | | ||||||||| cugAAAUUAUAAUGAAUUCUAAa 2 20 150 172 [dm3:3R:19184053-19184075:+] 0.3957 158 7 -10.01 -1.1137 MIMAT0005504 dme-miR-987 44437 sec13 guaGUUAGGUCUGAUAAAUGAAAu :::|: | | |: ||||||| ucgUGGUUAAAAGUG-UUACUUUa 2 22 30 52 [dm3:3R:19183933-19183955:+] 0.5613 147 7 -10.01 -1.0949

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sec13 RAID00238114 dme-mir-iab-4 miRNA MI0000432 Sec13 mRNA 44437 Prediction 0.1828 Sec13 RAID00718039 dme-miR-927-5p miRNA MIMAT0005501 Sec13 mRNA 44437 Prediction 0.2202 Sec13 RAID00723610 dme-miR-284-3p miRNA MIMAT0000348 Sec13 mRNA 44437 Prediction 0.1828 Sec13 RAID01041984 dme-miR-9c-5p miRNA MIMAT0000392 Sec13 mRNA 44437 Prediction 0.1828 Sec13 RAID01708006 dme-miR-316-5p miRNA MIMAT0000408 Sec13 mRNA 44437 Prediction 0.1828 Sec13 RAID01749728 dme-miR-9b-5p miRNA MIMAT0000395 Sec13 mRNA 44437 Prediction 0.1828 Sec13 RAID01781986 dme-miR-964-5p miRNA MIMAT0005478 Sec13 mRNA 44437 Prediction 0.1828 Sec13 RAID01818384 dme-miR-987-5p miRNA MIMAT0005504 Sec13 mRNA 44437 Prediction 0.2202 Sec13 RAID02532525 dme-miR-iab-4-5p miRNA MIMAT0000412 Sec13 mRNA 44437 Prediction 0.1828 Sec13 RAID03517204 dme-miR-315-5p miRNA MIMAT0000407 Sec13 mRNA 44437 Prediction 0.1828 Sec13 RAID03849158 dme-miR-9a-5p miRNA MIMAT0000114 Sec13 mRNA 44437 Prediction 0.1828