DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 43775 Crk gccccgcucucuuACUAUUcc |||||| aaggaauuucuuuUGAUAAuu 3 9 15 35 [dm3:4:233656-233676:+] 0.5067 120 0 -4.82 -0.1961 MIMAT0005022 dme-miR-1009 43775 Crk gaCU-UUACAUUGUUAAAAACUCu || ||| | ::||||||||| uuGAUAAUUU--UGAUUUUUGAGc 2 22 27 48 [dm3:4:233668-233689:+] 0.5215 157 7 -10.60 -1.1781 MIMAT0005022 dme-miR-1009 43775 Crk gaCUUUACAUU-GUUA---AAAACUcu |:|||| || ||| |||||| aaGGAAUGGAAGGAAUUUCUUUUGAua 3 22 6 32 [dm3:4:233647-233673:+] 0.5067 139 0 -9.26 -0.4835 MIMAT0005025 dme-miR-1012 43775 Crk gauaccccuuUUAGAAACU-GAUu :||:||||| ||| ugauaauuuuGAUUUUUGAGCUAa 2 14 28 51 [dm3:4:233669-233692:+] 0.5215 121 0 -9.95 -1.2992 MIMAT0011787 dme-miR-2280* 43775 Crk agucaaUCGAA-CCUUCAUUUaa | ||| ||||||| auuaaaAUCUUAUUAAGUAAAau 3 17 100 122 [dm3:4:233741-233763:+] 0.5073 127 0 -5.20 -0.2501 MIMAT0012215 dme-miR-2500 43775 Crk gacuccAGGUGUGU-GUUUUAGg || : | | :|||||| acauaaUCAGAAAAUUAAAAUCu 2 17 87 109 [dm3:4:233728-233750:+] 0.5073 127 6 -8.05 -0.2916 MIMAT0012531 dme-miR-10-3p 43775 Crk uuuggagagaucuuggCUUAAAc |||||| uaggaaggaauggaagGAAUUUc 2 8 2 24 [dm3:4:233643-233665:+] 0.4919 120 6 -6.02 -0.1556 MIMAT0000357 dme-miR-100 43775 Crk guguucaagccuaaaUGCCCAa |||||| guaaaauaaaaauaaACGGGUa 2 8 116 137 [dm3:4:233757-233778:+] 0.4755 120 6 -10.08 -0.2272 MIMAT0000398 dme-miR-307 43775 Crk gagugaguuccucCAACACu |||||| guaugauuaauaaGUUGUGc 2 8 54 73 [dm3:4:233695-233714:+] 0.5215 120 6 -8.40 -0.1541 MIMAT0000407 dme-miR-315 43775 Crk cgaAAGACUCGUUGUUAGUUUu || | | | |:|||||:| caaUUGUUAAC-AUAAUCAGAa 2 20 78 98 [dm3:4:233719-233739:+] 0.5215 137 0 -10.41 -0.2237 MIMAT0005467 dme-miR-190 43775 Crk guUGGUUCUUAUAGUUUGUA-UAGa |||| | |:|: ||||| ||| auACCA--AUUGUU-AACAUAAUCa 2 23 74 95 [dm3:4:233715-233736:+] 0.5215 121 0 -10.90 -1.2832 MIMAT0005479 dme-miR-932 43775 Crk gaCGUUACGUG-AUGCCUUAAcu | || | |: | |||||| uaGGAAGGAAUGGAAGGAAUUuc 3 21 2 24 [dm3:4:233643-233665:+] 0.4919 127 0 -10.16 -0.1242 MIMAT0005486 dme-miR-970 43775 Crk uaucggcgcacacAGAAUAcu |||||| cagaaaauuaaaaUCUUAUua 3 9 94 114 [dm3:4:233735-233755:+] 0.5073 120 0 -2.99 -0.3226 MIMAT0005519 dme-miR-999 43775 Crk ucugugucagaauguCAAUUGu |||||| uugugcauaccaauuGUUAACa 2 8 68 89 [dm3:4:233709-233730:+] 0.5215 120 6 -8.86 -0.2993 MIMAT0005019 dme-miR-1006 43775 Crk gaUACUU-AUUCUUUAGCUUAAAu | ||| || ::| |||||| auAGGAAGGAAUGGAAGGAAUUUc 2 22 1 24 [dm3:4:233642-233665:+] 0.4919 124 6 -8.75 -0.1556 MIMAT0005020 dme-miR-1007 43775 Crk acguuuguCAAUUAACUCGAau | | ||||||| auaauuuuGAUUUUUGAGCUaa 3 15 30 51 [dm3:4:233671-233692:+] 0.5215 126 0 -7.36 -0.3573 MIMAT0005027 dme-miR-1014 43775 Crk gacgUUUACUUUUACUUAAAa :|||| :|| |||||| gaagGAAUG-GAAGGAAUUUc 2 18 5 24 [dm3:4:233646-233665:+] 0.4919 131 6 -10.78 -0.1497

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Crk RAID00152945 dme-miR-1009-3p miRNA MIMAT0005022 Crk mRNA 43775 Prediction 0.1828 Crk RAID00316526 dme-miR-315-5p miRNA MIMAT0000407 Crk mRNA 43775 Prediction 0.1828 Crk RAID00679054 dme-miR-999-3p miRNA MIMAT0005519 Crk mRNA 43775 Prediction 0.2202 Crk RAID00761457 dme-miR-10-3p miRNA MIMAT0012531 Crk mRNA 43775 Prediction 0.1828 Crk RAID00974301 dme-miR-1007-3p miRNA MIMAT0005020 Crk mRNA 43775 Prediction 0.1828 Crk RAID01856637 dme-miR-100-5p miRNA MIMAT0000357 Crk mRNA 43775 Prediction 0.2202 Crk RAID01889218 dme-miR-932-5p miRNA MIMAT0005479 Crk mRNA 43775 Prediction 0.1828 Crk RAID03272989 dme-miR-1014-3p miRNA MIMAT0005027 Crk mRNA 43775 Prediction 0.1828 Crk RAID03293160 dme-miR-1006-3p miRNA MIMAT0005019 Crk mRNA 43775 Prediction 0.1828 Crk RAID03309677 dme-miR-307a-3p miRNA MIMAT0000398 Crk mRNA 43775 Prediction 0.1828 Crk RAID03583189 dme-miR-970-3p miRNA MIMAT0005486 Crk mRNA 43775 Prediction 0.1828 Crk RAID03847039 dme-miR-190-5p miRNA MIMAT0005467 Crk mRNA 43775 Prediction 0.1828