DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 45757 beta'Cop uggucaUG-GAC-UACAUUAUGAGu || ||| | ||||||: gagcaaACACUGCAAUAAAUACUUa 2 18 171 195 [dm3:2L:13382352-13382376:+] 0.5510 127 0 -11.15 -0.3881 MIMAT0000343 dme-miR-280 45757 beta'Cop auaguaaaguauACGUUGCAUUUAUGu ||||| ||||||| uggagcaaacacUGCAA--UAAAUACu 2 16 169 193 [dm3:2L:13382350-13382374:+] 0.5510 152 7 -9.42 -1.1106 MIMAT0000343 dme-miR-280 45757 beta'Cop auAGUAAAGUA---UACGUUGCAUUUAUGu | |||| || |||: :: ||||||: uuUGAUUUGAUUGAAUGUUGUUUAAAUAUa 2 26 111 140 [dm3:2L:13382292-13382321:+] 0.5742 148 0 -9.07 -0.3812 MIMAT0005502 dme-miR-985 45757 beta'Cop acgggcugguaaccuUGUAAAc |||||| uccgcgcaugcauucACAUUUg 2 8 93 114 [dm3:2L:13382274-13382295:+] 0.5974 120 6 -14.87 -0.1280 MIMAT0012196 dme-miR-2489 45757 beta'Cop ugacGUUUAUGUUGUAUGUUau :|||||| :|||||| gcaaUAAAUAC-UUAUACAAca 3 19 182 202 [dm3:2L:13382363-13382383:+] 0.4815 140 0 -11.44 -0.1136 MIMAT0012198 dme-miR-2491 45757 beta'Cop ucGUUGACGUUUCCGUUGUCGc :||: :| : ||||||: auUAAUAAUAUGUACAACAGUa 2 21 146 167 [dm3:2L:13382327-13382348:+] 0.5510 128 0 -9.71 -0.1916 MIMAT0012209 dme-miR-2497 45757 beta'Cop gacguuuguAAC--AUUUACAACa ||| |:||||||| acauuugauUUGAUUGAAUGUUGu 2 14 108 131 [dm3:2L:13382289-13382312:+] 0.5974 148 7 -11.06 -1.0964 MIMAT0000334 dme-miR-92a 45757 beta'Cop uauccggcccuguucACGUUAc |||||| uaauggagcaaacacUGCAAUa 2 8 166 187 [dm3:2L:13382347-13382368:+] 0.5510 120 6 -10.47 -0.2209 MIMAT0000338 dme-miR-277 45757 beta'Cop acagCAUGGUCU--AUCACGUAAAu || ||| | | |||||||| gggaGUCCCACAUUUCGUGCAUUUc 2 20 56 80 [dm3:2L:13382237-13382261:+] 0.5974 158 7 -14.70 -0.1689 MIMAT0000350 dme-miR-34 45757 beta'Cop guGUUGGUCGAUUG-GUGUGACGgu ||:: | |:| ||||||| aaCAGUAAUGGAGCAAACACUGCaa 3 23 161 185 [dm3:2L:13382342-13382366:+] 0.5510 129 0 -16.73 -0.3167 MIMAT0000358 dme-miR-92b 45757 beta'Cop cguccggcccugaucACGUUAa |||||| uaauggagcaaacacUGCAAUa 2 8 166 187 [dm3:2L:13382347-13382368:+] 0.5510 120 6 -7.14 -0.2209 MIMAT0000391 dme-miR-305 45757 beta'Cop gucucguggacuacuuCAUGUUa |||||| uaucuauuaauaauauGUACAAc 2 8 141 163 [dm3:2L:13382322-13382344:+] 0.5510 120 6 -7.06 -0.1352 MIMAT0000402 dme-miR-310 45757 beta'Cop uuuccggcccuucacACGUUAu |||||| uaauggagcaaacacUGCAAUa 2 8 166 187 [dm3:2L:13382347-13382368:+] 0.5510 120 6 -9.03 -0.2209 MIMAT0000403 dme-miR-311 45757 beta'Cop aguccggccacuuacACGUUAu |||||| uaauggagcaaacacUGCAAUa 2 8 166 187 [dm3:2L:13382347-13382368:+] 0.5510 120 6 -8.57 -0.2249 MIMAT0000404 dme-miR-312 45757 beta'Cop aguccggcagaguucACGUUAu |||||| uaauggagcaaacacUGCAAUa 2 8 166 187 [dm3:2L:13382347-13382368:+] 0.5510 120 6 -9.42 -0.2249 MIMAT0000405 dme-miR-313 45757 beta'Cop agcccgacacuuuucACGUUAu |||||| uaauggagcaaacacUGCAAUa 2 8 166 187 [dm3:2L:13382347-13382368:+] 0.5510 120 6 -10.72 -0.2209 MIMAT0005467 dme-miR-190 45757 beta'Cop guugguucuUAUAGUU-UGUAUAGa :| | || |:||||| uugaauguuGUUUAAAUAUAUAUCu 2 16 121 145 [dm3:2L:13382302-13382326:+] 0.5742 130 0 -9.36 -0.1096 MIMAT0005474 dme-miR-960 45757 beta'Cop cgauACGUUAGACCUUAUGAGu |||||| ||||||: acacUGCAAU---AAAUACUUa 2 19 177 195 [dm3:2L:13382358-13382376:+] 0.5510 134 0 -12.51 -0.3791 MIMAT0005483 dme-miR-1002 45757 beta'Cop agcgggaaacauaggugAUGAAUu |||||| gcaaacacugcaauaaaUACUUAu 2 8 173 196 [dm3:2L:13382354-13382377:+] 0.5510 120 6 -6.37 -0.1896 MIMAT0005493 dme-miR-977 45757 beta'Cop aaucuguugcacuUAUAGAgu |||||| guuguuuaaauauAUAUCUau 3 9 127 147 [dm3:2L:13382308-13382328:+] 0.5742 120 0 -5.60 -0.3577 MIMAT0005516 dme-miR-252 45757 beta'Cop gaggacGCCGUGA-UCAUGAAUc | ||| | | |||||| caaacaCUGCAAUAAAUACUUAu 2 17 174 196 [dm3:2L:13382355-13382377:+] 0.5510 123 6 -8.91 -0.1878

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score beta'COP RAID00030078 dme-miR-312-3p miRNA MIMAT0000404 beta'COP mRNA 45757 Prediction 0.2202 beta'COP RAID00391205 dme-miR-277-3p miRNA MIMAT0000338 beta'COP mRNA 45757 Prediction 0.2202 beta'COP RAID00790533 dme-miR-310-3p miRNA MIMAT0000402 beta'COP mRNA 45757 Prediction 0.2202 beta'COP RAID01156809 dme-miR-34-5p miRNA MIMAT0000350 beta'COP mRNA 45757 Prediction 0.1828 beta'COP RAID01325504 dme-miR-190-5p miRNA MIMAT0005467 beta'COP mRNA 45757 Prediction 0.1828 beta'COP RAID01558433 dme-miR-977-3p miRNA MIMAT0005493 beta'COP mRNA 45757 Prediction 0.1828 beta'COP RAID01692138 dme-miR-313-3p miRNA MIMAT0000405 beta'COP mRNA 45757 Prediction 0.2202 beta'COP RAID01811767 dme-miR-92a-3p miRNA MIMAT0000334 beta'COP mRNA 45757 Prediction 0.2202 beta'COP RAID01876659 dme-miR-960-5p miRNA MIMAT0005474 beta'COP mRNA 45757 Prediction 0.1828 beta'COP RAID01890754 dme-miR-1002-5p miRNA MIMAT0005483 beta'COP mRNA 45757 Prediction 0.1828 beta'COP RAID01969450 dme-miR-252-5p miRNA MIMAT0005516 beta'COP mRNA 45757 Prediction 0.1828 beta'COP RAID02427973 dme-miR-311-3p miRNA MIMAT0000403 beta'COP mRNA 45757 Prediction 0.2202 beta'COP RAID02533561 dme-miR-92b-3p miRNA MIMAT0000358 beta'COP mRNA 45757 Prediction 0.2381 beta'COP RAID02656619 dme-miR-305-5p miRNA MIMAT0000391 beta'COP mRNA 45757 Prediction 0.1828