DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 32752 par-6 ugguCAUGGACUACA--UUAUGAGu || | | :||| ||||||| uuucGU-CAUUGUGUCCAAUACUCg 2 20 974 997 [dm3:X:17600426-17600449:+] 0.5345 148 7 -14.17 -0.2051 MIMAT0000363 dme-miR-288 32752 par-6 guaCUUU--ACUUUAGCUGUA-CUUu |||| |||| |: |||| ||| cgaGAAAUCUGAACUU-ACAUCGAAc 2 21 1474 1498 [dm3:X:17600926-17600950:+] 0.5072 125 0 -7.45 -0.6546 MIMAT0000364 dme-miR-289 32752 par-6 ucAGCGUCCGAGGUGA-AUUUAUAAAu |:| || : || | | ||||||| acUUGAAGUUAACAAUAUUAAUAUUUa 2 25 1289 1315 [dm3:X:17600741-17600767:+] 0.5157 155 7 -7.75 -0.8673 MIMAT0000388 dme-miR-303 32752 par-6 uggucAAAGGACACUUUGGAUUu |||::| |||||||| uauuaUUUUUUAAUAAACCUAAg 2 19 1641 1663 [dm3:X:17601093-17601115:+] 0.5078 158 7 -12.32 -0.9851 MIMAT0005494 dme-miR-978 32752 par-6 gacGUUAAAUGCCGUGAC-CUGu || ||||: |:|||| ||| uucCAUUUUAU-GUACUGUGACa 2 20 777 798 [dm3:X:17600229-17600250:+] 0.4735 129 0 -17.51 -0.7140 MIMAT0005510 dme-miR-992 32752 par-6 gaAUCAUGGUCU--UUGCACAUGa || ||| | ||||||||| acUAACCCCAUACGAACGUGUACc 2 21 1334 1357 [dm3:X:17600786-17600809:+] 0.5157 155 7 -16.80 -0.1460 MIMAT0005517 dme-miR-997 32752 par-6 acuuugAG-GAAGCUCAA-ACCc || ||| ||||| ||| uugucaUCACUUAGAGUUAUGGa 2 16 1017 1039 [dm3:X:17600469-17600491:+] 0.5621 122 0 -12.91 -0.8293 MIMAT0005026 dme-miR-1013 32752 par-6 gcUCAAGCCGUAUGAAAAua | |||| |||||||| gcAAUUCG--AUACUUUUua 3 19 1124 1141 [dm3:X:17600576-17600593:+] 0.5652 139 0 -9.68 -0.1113 MIMAT0005029 dme-miR-1016 32752 par-6 gaUUCAUACCUCUCUC-CACUu |: || | :||||| |||| acAGCUA-GAGGAGAGAGUGAa 2 20 635 655 [dm3:X:17600087-17600107:+] 0.5420 121 0 -21.27 -0.6332 MIMAT0011784 dme-miR-2279* 32752 par-6 uuaAAGUG-UGUGUCUAUAAAUu || || |:|: ||||||| aagUUAACAAUAUUAAUAUUUAu 2 20 1294 1316 [dm3:X:17600746-17600768:+] 0.5157 154 7 -6.91 -0.4979 MIMAT0011784 dme-miR-2279* 32752 par-6 uuaAAGUGUGUGUCUAUAAAUu | :|:|:|:: :|||||| auaUAUAUAUAUGUGUAUUUAa 2 20 556 577 [dm3:X:17600008-17600029:+] 0.5420 143 6 -11.19 -0.1690 MIMAT0011784 dme-miR-2279* 32752 par-6 uuaAAGUGUGUGUCUA-UAAAUu | |: :|||: || ||||| auaUACGAGCACGAAUAAUUUAu 2 20 740 762 [dm3:X:17600192-17600214:+] 0.4886 123 0 -9.09 -0.9192 MIMAT0011791 dme-miR-2283 32752 par-6 uaacagCAUAAGUACUAUAAAAg | | | | ||||||| acgaaaGAAAACCUUAUAUUUUg 2 18 1608 1630 [dm3:X:17601060-17601082:+] 0.5078 145 7 -3.62 -0.7366 MIMAT0012196 dme-miR-2489 32752 par-6 ugACGUUUAUGUUGUAUGUUAu | :| | ||:| ||||||| aaUAUAUAAACGA-AUACAAUc 2 21 1156 1176 [dm3:X:17600608-17600628:+] 0.5652 154 7 -9.60 -0.6419 MIMAT0012196 dme-miR-2489 32752 par-6 ugacguuuAUGU-UGUAUGUUau ||:| |:|||||| auacuuuuUAUAUAUAUACAAga 3 15 1132 1154 [dm3:X:17600584-17600606:+] 0.5652 133 0 -10.09 -0.1570 MIMAT0012198 dme-miR-2491 32752 par-6 ucGUUGACGUUUCCGUUGUCGc ||| | || ||||||| uaCAAACGAAACACCAACAGCg 2 21 1085 1106 [dm3:X:17600537-17600558:+] 0.5652 152 7 -17.60 -0.1393 MIMAT0012198 dme-miR-2491 32752 par-6 ucGUUGAC-GUUUC-CGUU-GUCGc |:|||| || || ||| |||| agCGACUGUCAUAGCUCAACCAGCc 2 21 225 249 [dm3:X:17599677-17599701:+] 0.5273 126 0 -20.32 -0.2831 MIMAT0012214 dme-miR-2500* 32752 par-6 ccauaacauauacacacAAGGAAUg ||||||| guuuaucagacuuaacuUUCCUUAa 2 9 96 120 [dm3:X:17599548-17599572:+] 0.5273 140 7 -6.84 -0.8757 MIMAT0012215 dme-miR-2500 32752 par-6 gacuccaggugugUGUUUUAGg |||||||| ggcaauaauuguaACAAAAUCa 2 10 717 738 [dm3:X:17600169-17600190:+] 0.4886 145 7 -9.01 -1.0721 MIMAT0012217 dme-miR-2501* 32752 par-6 uuucuuucaaacuaacGUUCUCa |||||| acuuuuuauauauauaCAAGAGa 2 8 1134 1156 [dm3:X:17600586-17600608:+] 0.5652 120 6 -8.52 -0.3309 MIMAT0000105 dme-miR-1 32752 par-6 gagGUAUGAAGAAAUGUAAGGu | | | || |||||||| cgaCUUUCCUCCAUACAUUCCa 2 20 450 471 [dm3:X:17599902-17599923:+] 0.5535 155 7 -18.01 -0.9381 MIMAT0000105 dme-miR-1 32752 par-6 gagguaugaagaaaUGUAAGGu ||||||| uauaaaaaaaaaaaACAUUCCa 2 9 760 781 [dm3:X:17600212-17600233:+] 0.4886 140 7 -11.16 -1.2317 MIMAT0000116 dme-miR-11 32752 par-6 cguuCUUGA-GUCUGACAC-UAc |||:| || ||||| || aauuGAAUUGAAGUCUGUGUAUu 2 18 1205 1227 [dm3:X:17600657-17600679:+] 0.5157 120 0 -12.19 -0.1179 MIMAT0000347 dme-miR-283 32752 par-6 ucUUAAUGGUCGACUA-UAAAu |||| : ||| ||| |||| uuAAUU-UGAGCCGAUCAUUUu 2 20 849 869 [dm3:X:17600301-17600321:+] 0.4584 125 0 -5.45 -0.1239 MIMAT0000392 dme-miR-9c 32752 par-6 agAUGUCGAUCUUAUGGUU-UCu |||| : || ||||| || gaUACAAACGAAACACCAACAGc 2 21 1083 1105 [dm3:X:17600535-17600557:+] 0.5652 120 0 -7.90 -0.3048 MIMAT0000395 dme-miR-9b 32752 par-6 guAUGUCGAUUUUAGUGGUU-UCu |||| :||| |||||| || gaUACAAACGAAA-CACCAACAGc 2 22 1083 1105 [dm3:X:17600535-17600557:+] 0.5652 127 0 -12.98 -0.2997 MIMAT0000395 dme-miR-9b 32752 par-6 guAUGU-CGAU-UUUAGUG-GUUUCu |||| | | :|| ||| ||||| caUACAUUCCACGAAACACUCAAAGu 2 22 461 486 [dm3:X:17599913-17599938:+] 0.5535 123 0 -13.50 -0.6101 MIMAT0000408 dme-miR-316 32752 par-6 gcGGUCAUUCG--CCUUUUUCUGu ||: ||||| :||||||| ucCCGCUAAGCAACUGAAAAGACc 2 21 1572 1595 [dm3:X:17601024-17601047:+] 0.5078 155 7 -15.65 -0.2161 MIMAT0005467 dme-miR-190 32752 par-6 guugguuCUUAUAGUUUGUAUAGa ||:|| |||||||| auugauuGAGUAAACAACAUAUCg 2 18 302 325 [dm3:X:17599754-17599777:+] 0.5273 157 7 -11.14 -0.3276 MIMAT0005472 dme-miR-375 32752 par-6 auuGAAUUCGGU-UUGCUUGUUu || || ::| | ||||||| aauCUGAACUUACAUCGAACAAa 2 20 1479 1501 [dm3:X:17600931-17600953:+] 0.5072 154 7 -14.82 -0.8640 MIMAT0005474 dme-miR-960 32752 par-6 cgauacGUUAGAC--CUUAUGAGu || | || ||||||| uuucguCAUUGUGUCCAAUACUCg 2 17 974 997 [dm3:X:17600426-17600449:+] 0.5345 143 7 -11.22 -0.2070 MIMAT0005477 dme-miR-963 32752 par-6 cuUUGUUGGACUAUAAAU-GGAACa | | |::| | || || ||||| auACCCAUUUCACAUAUACCCUUGc 2 23 1444 1468 [dm3:X:17600896-17600920:+] 0.5157 126 0 -7.40 -0.8933 MIMAT0005483 dme-miR-1002 32752 par-6 agcgggaAACAUA-GGUGA-UGAAUu |||||| :|:|| ||||| ugaucgcUUGUAUAUCGCUCACUUAc 2 18 196 221 [dm3:X:17599648-17599673:+] 0.5273 132 0 -18.49 -0.4425 MIMAT0005487 dme-miR-971 32752 par-6 agugacAU-UCUUCAUUGUGGUu || | | | ||||||| uuaagaUACAAACGAAACACCAa 2 17 1079 1101 [dm3:X:17600531-17600553:+] 0.5652 147 7 -11.09 -0.7327 MIMAT0005507 dme-miR-137 32752 par-6 gaUGCACAUAAGAGUUCG-UUAu |: | ||| | |||| ||| auAUAUAUAUACAAAAGCUAAUg 2 21 1544 1566 [dm3:X:17600996-17601018:+] 0.5078 120 0 -5.27 -0.4262 MIMAT0005513 dme-miR-994 32752 par-6 uaGUGCCGAUGAUAAAGGAAUc || | || |||||||| auCA-GACUUAACUUUCCUUAa 2 21 100 120 [dm3:X:17599552-17599572:+] 0.5273 146 7 -10.78 -0.8723 MIMAT0005519 dme-miR-999 32752 par-6 ucuguguCAGAAUGUCAAUUGu | |||: ||||||| ucugcucGACUUGAAGUUAACa 2 16 1281 1302 [dm3:X:17600733-17600754:+] 0.5157 155 7 -13.96 -0.8768 MIMAT0005519 dme-miR-999 32752 par-6 ucUGUGUCAGAAUGUCAAUUGu ||: :| || ||||||| aaACGAGGAGAUAAAGUUAACa 2 21 1052 1073 [dm3:X:17600504-17600525:+] 0.5652 152 7 -11.76 -1.1606 MIMAT0005023 dme-miR-1010 32752 par-6 gacGUUUACCUUGCUAUC-CACUUu ||: | ||: || || ||||| agaCAGCUAGAG-GAGAGAGUGAAa 2 22 633 656 [dm3:X:17600085-17600108:+] 0.5420 123 0 -13.57 -0.7225

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score par-6 RAID00044452 dme-miR-973-5p miRNA MIMAT0005489 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID00070646 dme-miR-1-3p miRNA MIMAT0000105 par-6 mRNA 32752 Prediction 0.2381 par-6 RAID00476516 dme-miR-316-5p miRNA MIMAT0000408 par-6 mRNA 32752 Prediction 0.2202 par-6 RAID00530726 dme-miR-9b-5p miRNA MIMAT0000395 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID00793935 dme-miR-12-5p miRNA MIMAT0000117 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID00860496 dme-miR-932-5p miRNA MIMAT0005479 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID00948453 dme-miR-5-5p miRNA MIMAT0000110 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID01003607 dme-miR-375-3p miRNA MIMAT0005472 par-6 mRNA 32752 Prediction 0.2202 par-6 RAID01404506 dme-miR-283-5p miRNA MIMAT0000347 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID01750472 dme-miR-190-5p miRNA MIMAT0005467 par-6 mRNA 32752 Prediction 0.2202 par-6 RAID01841254 dme-miR-303-5p miRNA MIMAT0000388 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID02329050 dme-miR-1010-3p miRNA MIMAT0005023 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID02353806 dme-miR-963-5p miRNA MIMAT0005477 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID02413031 dme-miR-137-3p miRNA MIMAT0005507 par-6 mRNA 32752 Prediction 0.2202 par-6 RAID02468277 dme-miR-1002-5p miRNA MIMAT0005483 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID02484996 dme-miR-11-3p miRNA MIMAT0000116 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID02502827 dme-miR-992-3p miRNA MIMAT0005510 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID03073028 dme-mir-iab-4 miRNA MI0000432 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID03387688 dme-miR-999-3p miRNA MIMAT0005519 par-6 mRNA 32752 Prediction 0.2381 par-6 RAID03555720 dme-miR-284-3p miRNA MIMAT0000348 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID03612874 dme-miR-971-3p miRNA MIMAT0005487 par-6 mRNA 32752 Prediction 0.2381 par-6 RAID03768582 dme-miR-994-5p miRNA MIMAT0005513 par-6 mRNA 32752 Prediction 0.2202 par-6 RAID03799549 dme-miR-960-5p miRNA MIMAT0005474 par-6 mRNA 32752 Prediction 0.2202 par-6 RAID03904374 dme-miR-9c-5p miRNA MIMAT0000392 par-6 mRNA 32752 Prediction 0.1828 par-6 RAID03981067 dme-miR-314-3p miRNA MIMAT0000406 par-6 mRNA 32752 Prediction 0.1828