DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 36383 Amph gccccGCUCUCUUACUAUUcc :|| |||||||| cauauUGAACAAAUGAUAAua 3 17 930 950 [dm3:2R:8499524-8499544:+] 0.5724 132 0 -6.36 -0.2053 MIMAT0000343 dme-miR-280 36383 Amph auAGUAAAGUA---UACGUU-GCAUUUA-UGu |:||||:|| | |:| :|||||| || uuUUAUUUUAUUUAACUCGAUUGUAAAUCACa 2 26 804 835 [dm3:2R:8499398-8499429:+] 0.5724 131 0 -13.51 -0.9203 MIMAT0000363 dme-miR-288 36383 Amph guacuuuacuuUAGCUGUACUUu ||| :|||||| aacacuuauuuAUC-GCAUGAAc 2 13 909 930 [dm3:2R:8499503-8499524:+] 0.5724 130 6 -9.99 -0.1984 MIMAT0000364 dme-miR-289 36383 Amph ucagcguccgaggugaaUUUAUAAAu :||||||| augaggaaugagagagaGAAUAUUUu 2 10 274 299 [dm3:2R:8498868-8498893:+] 0.5019 141 7 -6.97 -0.5015 MIMAT0000388 dme-miR-303 36383 Amph uggUCAAAGGACACUUUGGAUUu |||||| | |||||||| cuaAGUUUCAAG-AAAACCUAAa 2 21 329 350 [dm3:2R:8498923-8498944:+] 0.5019 162 7 -16.97 -1.0932 MIMAT0000388 dme-miR-303 36383 Amph uggucaaaggacacUUUGGAUuu ||||||| aaaaccuaaagcauAAACCUAcg 3 10 341 363 [dm3:2R:8498935-8498957:+] 0.5019 125 0 -11.12 -0.1237 MIMAT0005482 dme-miR-967 36383 Amph gcgaagaGGUCUCCAUAGAga | | | |||||| augcgaaCAAAACGUAUCUaa 3 15 408 428 [dm3:2R:8499002-8499022:+] 0.6474 126 0 -8.80 -0.2067 MIMAT0005488 dme-miR-972 36383 Amph cggAUUUAUAAGCAUAACAUGu |: || ||: |||||| acgUGUAUCUUUAAUUUGUACu 2 20 689 710 [dm3:2R:8499283-8499304:+] 0.5724 123 6 -8.51 -0.1229 MIMAT0005499 dme-miR-983 36383 Amph agUAAUCAAGC----UUUGCAUA-AUa |||| | || |||||||| || uaAUUAAUGCGAACAAAACGUAUCUAa 2 21 402 428 [dm3:2R:8498996-8499022:+] 0.6474 127 0 -10.39 -1.2352 MIMAT0005510 dme-miR-992 36383 Amph gaaucAUGGUCUUUGCACAUGa || |: |||||||: acguuUAGCGAUUACGUGUAUc 2 18 676 697 [dm3:2R:8499270-8499291:+] 0.5724 133 0 -13.64 -0.1175 MIMAT0005022 dme-miR-1009 36383 Amph gaCUUUACAUUGUUA-AAAACUcu ||:| | :| ||| |||||| auGAGA-GAGAGAAUAUUUUGAaa 3 22 281 303 [dm3:2R:8498875-8498897:+] 0.5019 138 0 -7.84 -0.1007 MIMAT0011784 dme-miR-2279* 36383 Amph uuaaagugugugucuAUAAAUu |||||| uuauuauuuuaauuuUAUUUAa 2 8 879 900 [dm3:2R:8499473-8499494:+] 0.5724 120 6 -4.20 -0.4747 MIMAT0011789 dme-miR-2281 36383 Amph cgUUAUGACGUCUAUGUCUau :||| | | |||||| auGAUAAU-AAUUUACAGAaa 3 20 942 961 [dm3:2R:8499536-8499555:+] 0.5724 125 0 -7.02 -0.1290 MIMAT0011791 dme-miR-2283 36383 Amph uaacagcauaaguacUAUAAAAg ||||||| ggaaugagagagagaAUAUUUUg 2 9 278 300 [dm3:2R:8498872-8498894:+] 0.5019 140 7 -1.74 -0.7349 MIMAT0011791 dme-miR-2283 36383 Amph uaacagcauaaguacuAUAAAAg |||||| cacacuguaaaguuauUAUUUUa 2 8 867 889 [dm3:2R:8499461-8499483:+] 0.5724 120 6 -4.07 -0.3370 MIMAT0012199 dme-miR-2492 36383 Amph aaaCUUUCGAGAGCUGUUUUGUa |||||| | |:|||||| acaGAAAGC---CAAUAAAACAu 2 21 955 974 [dm3:2R:8499549-8499568:+] 0.5724 144 6 -14.57 -0.1728 MIMAT0012199 dme-miR-2492 36383 Amph aaacuuucgagaGC-UGUUUUGUa || |||||||: ucauaauuaaugCGAACAAAACGu 2 12 399 422 [dm3:2R:8498993-8499016:+] 0.6474 130 0 -12.79 -0.1154 MIMAT0012201 dme-miR-2493 36383 Amph ugcgGAGC--GUGUUUAUGUGUGCc |||| :::||| |||||| uuaaCUCGAUUGUAAA-UCACACGa 2 20 815 838 [dm3:2R:8499409-8499432:+] 0.5724 124 6 -19.97 -0.1832 MIMAT0012202 dme-miR-2494* 36383 Amph aaggguuagaccacGUGAAUg |||||| uuaauuaauuuaaaCACUUAu 2 8 897 917 [dm3:2R:8499491-8499511:+] 0.5724 120 6 -10.39 -0.2789 MIMAT0012203 dme-miR-2494 36383 Amph gaacauucacCUGUAAUGACCCUu |||| ||||||: -------agcGACA-AACUGGGGa 2 15 1 16 [dm3:2R:8498595-8498610:+] 0.6246 132 0 -17.36 -0.2491 MIMAT0000109 dme-miR-4 36383 Amph aguuaccaacagaUCGAAAUa ||||||| ucgaacuagcuacAGCUUUAu 2 9 739 759 [dm3:2R:8499333-8499353:+] 0.5724 140 7 -8.33 -0.5060 MIMAT0000114 dme-miR-9a 36383 Amph agUAUGUCGAU--CUAUUG-GUUUCu | |: |:|| | |||| ||||| uaAAAUUGUUAUUGUUAACACAAAGa 2 22 233 258 [dm3:2R:8498827-8498852:+] 0.5019 124 0 -10.46 -1.0297 MIMAT0000114 dme-miR-9a 36383 Amph aguaugucGAUCUAUUGG-UUUCu | ||| |||| |||| cuaaguuuCAAGAAAACCUAAAGc 2 16 329 352 [dm3:2R:8498923-8498946:+] 0.5019 123 0 -10.85 -1.1094 MIMAT0000361 dme-miR-87 36383 Amph guguGGACUUUAAAACGAGUu ||| ||| |||||| uaauCCUAUUAUUGUGCUCAu 2 18 382 402 [dm3:2R:8498976-8498996:+] 0.7118 129 6 -12.63 -0.4464 MIMAT0000392 dme-miR-9c 36383 Amph agaugucGAUCUUAUGG-UUUCu | |||| ||| |||| uaaguuuCAAGAAAACCUAAAGc 2 16 330 352 [dm3:2R:8498924-8498946:+] 0.5019 123 0 -10.85 -1.1094 MIMAT0000407 dme-miR-315 36383 Amph cgAAAGACUCGUUGUUAGUUUu || :| | || ||||||| aaUUGUUAAACA--AAUCAAAa 2 21 487 506 [dm3:2R:8499081-8499100:+] 0.5830 149 7 -11.35 -0.8995 MIMAT0000409 dme-miR-317 36383 Amph ugaccUAUGGUGGUCGACACAAGu || |:|::| :|||| || uguuaAUCCUAUUA-UUGUGCUCa 2 20 379 401 [dm3:2R:8498973-8498995:+] 0.7118 125 0 -13.12 -0.1453 MIMAT0000412 dme-miR-iab-4-5p 36383 Amph agUCCUAUGUAAGU-CAUAUGca || ||| | :| |||||| aaAGCAUAAACCUACGUAUACau 3 21 348 370 [dm3:2R:8498942-8498964:+] 0.6069 135 0 -6.33 -0.1104 MIMAT0000413 dme-miR-iab-4-3p 36383 Amph caaUGCAUAUGACUUCCAUAUGgc :| || || | |||||| aaaGCAUAAAC-CUACGUAUACau 3 22 348 370 [dm3:2R:8498942-8498964:+] 0.6069 127 0 -10.19 -0.1126 MIMAT0005467 dme-miR-190 36383 Amph guUGGUUCUUAUAGUUUGUAUAGa |||| |||:| ||||||||| aaACCACAAAUGUAAAACAUAUCa 2 23 448 471 [dm3:2R:8499042-8499065:+] 0.5830 182 7 -19.07 -1.1654 MIMAT0005467 dme-miR-190 36383 Amph guUGGUUCUU--AU-AGUUUGUAUAga | || || || :| |||||| aaAGCAUAAACCUACGUAUACAUAUau 3 23 348 374 [dm3:2R:8498942-8498968:+] 0.6069 124 0 -8.24 -0.1758 MIMAT0005472 dme-miR-375 36383 Amph auuGAAUUCGGUUUGCUUGUUu | ||| : | :||||||| gcuCAUAAUUAAUGCGAACAAa 2 20 397 418 [dm3:2R:8498991-8499012:+] 0.6474 155 7 -13.21 -1.1703 MIMAT0005472 dme-miR-375 36383 Amph auUGAAUUCGGUUUGCUUGUUu :| |:| | | :|||||| ucGCAUGAACAUAUUGAACAAa 2 21 921 942 [dm3:2R:8499515-8499536:+] 0.5724 136 6 -10.13 -0.2977 MIMAT0005487 dme-miR-971 36383 Amph agugacaUUCUUCAUUGUG-GUu ||||| ||||| || cacaaagAAGAACGAACACACAg 2 16 251 273 [dm3:2R:8498845-8498867:+] 0.5019 123 0 -15.39 -0.7679 MIMAT0005492 dme-miR-976 36383 Amph cgUAACUACU-AUUGAUUAGGuu || || | | ::|||||| acAUAUAUUAUUUGUUAAUCCua 3 21 367 389 [dm3:2R:8498961-8498983:+] 0.6069 131 0 -8.14 -0.3147 MIMAT0005504 dme-miR-987 36383 Amph guaguUAGGUCUGAUAAAUGAAAu |||: | | | |||||| cguguAUCUUUAAUUUGUACUUUg 2 20 690 713 [dm3:2R:8499284-8499307:+] 0.5724 127 6 -10.33 -0.1419 MIMAT0005516 dme-miR-252 36383 Amph gaggacgccgUGAUCAUGAAuc |:| |||||| uguaucuuuaAUUUGUACUUug 3 13 692 713 [dm3:2R:8499286-8499307:+] 0.5724 128 0 -8.70 -0.1164 MIMAT0005024 dme-miR-1011 36383 Amph gacgcucgcuaaacUUGGUUAUu |:|||||| aauaauuuacagaaAGCCAAUAa 2 10 947 969 [dm3:2R:8499541-8499563:+] 0.5724 129 6 -9.25 -0.5827 MIMAT0005027 dme-miR-1014 36383 Amph gacguuuacuuuUACUUAAAa :||||||| cuuuuguauuuuGUGAAUUUu 2 10 532 552 [dm3:2R:8499126-8499146:+] 0.5830 141 7 -8.78 -0.5690

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Amph RAID00068820 dme-miR-87-3p miRNA MIMAT0000361 Amph mRNA 36383 Prediction 0.1828 Amph RAID00110708 dme-miR-303-5p miRNA MIMAT0000388 Amph mRNA 36383 Prediction 0.1828 Amph RAID00253840 dme-miR-315-5p miRNA MIMAT0000407 Amph mRNA 36383 Prediction 0.2202 Amph RAID00371152 dme-miR-190-5p miRNA MIMAT0005467 Amph mRNA 36383 Prediction 0.2381 Amph RAID00892044 dme-miR-976-3p miRNA MIMAT0005492 Amph mRNA 36383 Prediction 0.2202 Amph RAID00979374 dme-miR-981-3p miRNA MIMAT0005497 Amph mRNA 36383 Prediction 0.1828 Amph RAID01124777 dme-miR-252-5p miRNA MIMAT0005516 Amph mRNA 36383 Prediction 0.1828 Amph RAID01465768 dme-miR-9c-5p miRNA MIMAT0000392 Amph mRNA 36383 Prediction 0.1828 Amph RAID01493382 dme-miR-973-5p miRNA MIMAT0005489 Amph mRNA 36383 Prediction 0.1828 Amph RAID01652051 dme-miR-1011-3p miRNA MIMAT0005024 Amph mRNA 36383 Prediction 0.2202 Amph RAID01682682 dme-miR-iab-4-5p miRNA MIMAT0000412 Amph mRNA 36383 Prediction 0.1828 Amph RAID01724223 dme-miR-4-3p miRNA MIMAT0000109 Amph mRNA 36383 Prediction 0.2381 Amph RAID01925881 dme-miR-929-3p miRNA MIMAT0005511 Amph mRNA 36383 Prediction 0.1828 Amph RAID02244596 dme-miR-9a-5p miRNA MIMAT0000114 Amph mRNA 36383 Prediction 0.1828 Amph RAID02245716 dme-miR-317-3p miRNA MIMAT0000409 Amph mRNA 36383 Prediction 0.1828 Amph RAID02749595 dme-miR-iab-4-3p miRNA MIMAT0000413 Amph mRNA 36383 Prediction 0.1828 Amph RAID02773410 dme-miR-971-3p miRNA MIMAT0005487 Amph mRNA 36383 Prediction 0.1828 Amph RAID02813718 dme-miR-79-3p miRNA MIMAT0000352 Amph mRNA 36383 Prediction 0.2202 Amph RAID02844978 dme-miR-375-3p miRNA MIMAT0005472 Amph mRNA 36383 Prediction 0.2381 Amph RAID02976952 dme-miR-1017-3p miRNA MIMAT0005030 Amph mRNA 36383 Prediction 0.2202 Amph RAID03087681 dme-miR-1009-3p miRNA MIMAT0005022 Amph mRNA 36383 Prediction 0.1828 Amph RAID03151790 dme-miR-1014-3p miRNA MIMAT0005027 Amph mRNA 36383 Prediction 0.2202 Amph RAID03341488 dme-miR-987-5p miRNA MIMAT0005504 Amph mRNA 36383 Prediction 0.1828 Amph RAID03815342 dme-miR-999-3p miRNA MIMAT0005519 Amph mRNA 36383 Prediction 0.1828