DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000330 dme-miR-184* 33738 Rpn11 gccccgcucucUUACUAUUcc | |||||| uaaacguauuaACUGAUAAaa 3 11 58 78 [dm3:2L:5058437-5058457:-] 0.4891 122 0 -5.09 -0.1265 MIMAT0000344 dme-miR-281-1* 33738 Rpn11 ugacAGCUGCCU-GUCGAGAGaa |: |:| | : |||||| ---aUUUAUGCAUUUGCUCUCcu 3 19 1 20 [dm3:2L:5058495-5058514:-] 0.7305 125 0 -11.72 -0.1575 MIMAT0005481 dme-miR-966 33738 Rpn11 ggugugucggguguUGGGUGu |||||| caauuucccuucauACCCACa 2 8 26 46 [dm3:2L:5058469-5058489:-] 0.4891 120 6 -19.04 -0.1473 MIMAT0005499 dme-miR-983 33738 Rpn11 aguaaucaaGCUUUGCAUAAUa | |||||||||| aucgcuaagCUAAACGUAUUAa 2 14 48 69 [dm3:2L:5058446-5058467:-] 0.4891 157 7 -12.56 -1.2216 MIMAT0012215 dme-miR-2500 33738 Rpn11 gacuccAGGUGUGUGU-UUUAGg |:||:|| || ||||| uuucccUUCAUACCCACAAAUCg 2 17 29 51 [dm3:2L:5058464-5058486:-] 0.4891 128 0 -10.46 -0.6490 MIMAT0000338 dme-miR-277 33738 Rpn11 acagcauggucuAUCACGUAAAu || ||||||| ---------auuUA-UGCAUUUg 2 12 1 13 [dm3:2L:5058502-5058514:-] 0.7305 141 7 -7.73 -0.9803 MIMAT0000349 dme-miR-281-2* 33738 Rpn11 ugacAGCUGCCU-AUCGAGAGaa |: |:| | | |||||| ---aUUUAUGCAUUUGCUCUCcu 3 19 1 20 [dm3:2L:5058495-5058514:-] 0.7305 129 0 -10.19 -0.1575 MIMAT0000361 dme-miR-87 33738 Rpn11 gugUGGACUUUAAAACGAGuu |::| : ||||||| ---AUUUAUGCAUUUGCUCuc 3 19 1 18 [dm3:2L:5058497-5058514:-] 0.7305 126 0 -7.64 -0.1822 MIMAT0005024 dme-miR-1011 33738 Rpn11 gacgcucgcuaaacUUGGUUAuu ||||||| auuugcucuccucaAACCAAUuu 3 10 9 31 [dm3:2L:5058484-5058506:-] 0.6098 125 0 -8.15 -0.1393

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rpn11 RAID00626394 dme-miR-1011-3p miRNA MIMAT0005024 Rpn11 mRNA 33738 Prediction 0.1828 Rpn11 RAID00904404 dme-miR-87-3p miRNA MIMAT0000361 Rpn11 mRNA 33738 Prediction 0.1828 Rpn11 RAID01022170 dme-miR-966-5p miRNA MIMAT0005481 Rpn11 mRNA 33738 Prediction 0.1828 Rpn11 RAID03066863 dme-miR-281-2-5p miRNA MIMAT0000349 Rpn11 mRNA 33738 Prediction 0.1828 Rpn11 RAID03813828 dme-miR-277-3p miRNA MIMAT0000338 Rpn11 mRNA 33738 Prediction 0.2381