DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 32169 Usp7 caCGUUUGCUAAAAGU-UGUGu | |||||| |||| |||| uuGGAAACGA--UUCAUACACa 2 20 172 191 [dm3:X:11918150-11918169:-] 0.5341 128 0 -17.71 -0.4626 MIMAT0000363 dme-miR-288 32169 Usp7 guACUUUACUUUAGCUGUACUUu ||| | || ||||||| ugUGAUUUUUAA---ACAUGAAa 2 22 1151 1170 [dm3:X:11917171-11917190:-] 0.5229 141 7 -10.09 -1.2281 MIMAT0000364 dme-miR-289 32169 Usp7 ucAGCGUCCGA--GGUGAAU--UUAUAAAu |:|:|| || | :|| | ||||||| guUUGUAGUCUAACAGCUAAGUAAUAUUUa 2 25 270 299 [dm3:X:11918042-11918071:-] 0.5341 158 7 -13.56 -0.8415 MIMAT0000388 dme-miR-303 32169 Usp7 uggUCAAAGGACACUUUGGAUUu || ||| | |||||||| augAGAAACCU-U-AAACCUAAu 2 21 816 836 [dm3:X:11917505-11917525:-] 0.4605 148 7 -11.79 -0.5542 MIMAT0005481 dme-miR-966 32169 Usp7 ggugUGUCGGGUGUUGGGUgu ||| | |||||| cggaACAAAAAAAAACCCAau 3 18 1434 1454 [dm3:X:11916887-11916907:-] 0.5172 125 0 -12.08 -0.1584 MIMAT0005488 dme-miR-972 32169 Usp7 cgGAUUUAUAAGCAUA-ACAUGu :| ||| | : ||| ||||| aaUUCAAUUUAUUUAUGUGUACa 2 21 1404 1426 [dm3:X:11916915-11916937:-] 0.4843 124 0 -8.12 -1.1194 MIMAT0005509 dme-miR-991 32169 Usp7 ugaaagGUUUGAUGUUGAAAUu |||::| :||||||| auguaaCAAGUU-UAACUUUAa 2 17 952 972 [dm3:X:11917369-11917389:-] 0.4608 154 7 -12.33 -1.0629 MIMAT0005510 dme-miR-992 32169 Usp7 gaaucauggucuuUGCACAUGa |:|||||| auucaauuuauuuAUGUGUACa 2 10 1405 1426 [dm3:X:11916915-11916936:-] 0.4843 129 6 -9.64 -0.1356 MIMAT0005026 dme-miR-1013 32169 Usp7 gcucaagccguAUGAAAAUa |||||||| cuuacccuuuuUACUUUUAu 2 10 239 258 [dm3:X:11918083-11918102:-] 0.5341 145 7 -7.23 -1.0168 MIMAT0011784 dme-miR-2279* 32169 Usp7 uuAAAGUGU-GUGUC--UAUAAAUu | | ||| | || ||||||| agUCUAACAGCUAAGUAAUAUUUAg 2 21 276 300 [dm3:X:11918041-11918065:-] 0.5341 146 7 -7.37 -0.4626 MIMAT0011786 dme-miR-2280 32169 Usp7 uauaAAAUAACGG--U-UCGAUUCu |||:| |:| | ||||||| auugUUUGUAGUCUAACAGCUAAGu 2 19 267 291 [dm3:X:11918050-11918074:-] 0.5341 152 7 -13.68 -0.6537 MIMAT0011791 dme-miR-2283 32169 Usp7 uaacagcauaagUACUAUAAAAg || ||||||| agccaacaagaaAUCAUAUUUUa 2 12 1337 1359 [dm3:X:11916982-11917004:-] 0.4843 147 7 -2.52 -0.8795 MIMAT0012196 dme-miR-2489 32169 Usp7 ugacGUUUA-UGUUGUAUGUUAu :|| | |:|| |||||| aaauUAAUUAAUAAAUUACAAUa 2 19 1205 1227 [dm3:X:11917114-11917136:-] 0.5229 125 6 -6.72 -0.2515 MIMAT0012199 dme-miR-2492 32169 Usp7 aaaCUUUCGA-G--AGCUGUUUUGUa |||| | | |: |||||||| aacGAAACAUACGAUUAACAAAACAa 2 21 972 997 [dm3:X:11917344-11917369:-] 0.4608 150 7 -8.89 -1.1089 MIMAT0012209 dme-miR-2497 32169 Usp7 gacgUUUGUAACAUUUACA-ACa |||:: | |||||| || caugAAAUGAUAAAAAUGUAUGc 2 19 1164 1186 [dm3:X:11917155-11917177:-] 0.5229 122 0 -4.79 -1.0337 MIMAT0000106 dme-miR-2a 32169 Usp7 cgaguAGUU--UCGACCGACACUAu |||| | :| :|||||| uuguuUCAAACAAUUAUUUGUGAUu 2 19 1133 1157 [dm3:X:11917184-11917208:-] 0.5229 133 6 -10.23 -0.1490 MIMAT0000107 dme-miR-2b 32169 Usp7 cgaGGAGUU--UCGACCGACACUAu ::|||| | :| :|||||| uugUUUCAAACAAUUAUUUGUGAUu 2 21 1133 1157 [dm3:X:11917184-11917208:-] 0.5229 135 6 -12.50 -0.1490 MIMAT0000110 dme-miR-5 32169 Usp7 guauaGUGUUGC-UAGC-AAGGAAa |: |:|| |||| |||||| cgccgCGAAGCGAAUCGUUUCCUUu 2 19 639 663 [dm3:X:11917678-11917702:-] 0.4961 129 6 -20.44 -0.1650 MIMAT0000111 dme-miR-6 32169 Usp7 uuuuucUUGUCGGU-GACACUAu |||| ::| :|||||| guuucaAACAAUUAUUUGUGAUu 2 17 1135 1157 [dm3:X:11917184-11917206:-] 0.5229 139 6 -13.02 -0.1447 MIMAT0000116 dme-miR-11 32169 Usp7 cgUUCUUGAGUCUGACACUAc || || |:| :|||||| caAACAA-UUA-UUUGUGAUu 2 20 1139 1157 [dm3:X:11917184-11917202:-] 0.5229 131 6 -7.92 -0.1476 MIMAT0000118 dme-miR-13a 32169 Usp7 ugAGUAGUUUUACCGACACUAu ||| || | :|||||| uuUCAAACAAUUAUUUGUGAUu 2 21 1136 1157 [dm3:X:11917184-11917205:-] 0.5229 136 6 -10.55 -0.1476 MIMAT0000119 dme-miR-13b 32169 Usp7 ugagcAGUU--UU-ACCGACACUAu |||| || | :|||||| uuguuUCAAACAAUUAUUUGUGAUu 2 18 1133 1157 [dm3:X:11917184-11917208:-] 0.5229 131 6 -9.39 -0.1476 MIMAT0000120 dme-miR-14 32169 Usp7 auccuCUCUCUUUUUCU-GACu ||||||::|||| ||| uaaacGAGAGAGGAAGAGCUGu 2 17 912 933 [dm3:X:11917408-11917429:-] 0.4608 136 0 -23.96 -0.5531 MIMAT0000399 dme-miR-308 32169 Usp7 gaGUGUCAUAUUAGGACACUAa || | || || :|||||| uuCAAACAAUUAU-UUGUGAUu 2 21 1137 1157 [dm3:X:11917184-11917204:-] 0.5229 138 6 -10.96 -0.1382 MIMAT0000407 dme-miR-315 32169 Usp7 cgAAAGACUCGUUG--UUAGUUUu |||| || ||| ||||||| cgUUUC-GAAAAACCGAAUCAAAu 2 21 1306 1328 [dm3:X:11917013-11917035:-] 0.4572 157 7 -10.25 -0.1234 MIMAT0000411 dme-miR-2c 32169 Usp7 cggguAGUU--UCGACCGACACUAu |||| | :| :|||||| uuguuUCAAACAAUUAUUUGUGAUu 2 19 1133 1157 [dm3:X:11917184-11917208:-] 0.5229 133 6 -9.40 -0.1490 MIMAT0005472 dme-miR-375 32169 Usp7 auugaaUUCGGUUUG-CUUGUUu || :|||| |||||| guguacAAAAUAAACGGAACAAa 2 17 1420 1442 [dm3:X:11916899-11916921:-] 0.4843 124 6 -11.73 -1.1309 MIMAT0005492 dme-miR-976 32169 Usp7 cgUAACUACU-AUUGAUUAG-GUu || ||| | |: :||||| || uaAUCGAUAAUUGUUUAAUCGCAg 2 21 596 619 [dm3:X:11917722-11917745:-] 0.4961 123 0 -8.97 -0.3466 MIMAT0005503 dme-miR-986 32169 Usp7 agucaGUGU-UGCG---AUAAGCUCu :|:| |:|| |||||||| auauaUAUAUAUGCAUAUAUUCGAGc 2 18 1052 1077 [dm3:X:11917264-11917289:-] 0.5229 147 7 -14.84 -0.5350 MIMAT0005504 dme-miR-987 32169 Usp7 guagUUAGGUCUGAUAAAUGAAAu || ::| || |||||||| gcggAACUUACCCUUUUUACUUUu 2 21 233 256 [dm3:X:11918085-11918108:-] 0.5341 160 7 -10.12 -0.9901 MIMAT0005504 dme-miR-987 32169 Usp7 guAGUUAGGUCUGAUAAAUGAAAu || |:|| || ||||||| gcUCCCUUCAUUCUUCUUACUUUg 2 23 371 394 [dm3:X:11917947-11917970:-] 0.5213 158 7 -14.53 -0.4144 MIMAT0005507 dme-miR-137 32169 Usp7 gaUGCACAUAAGAGUUCGUUau | || | | |||||| aaAAGUAAAAGCAAAAGCAAga 3 21 742 763 [dm3:X:11917578-11917599:-] 0.4961 124 0 -6.49 -0.1320 MIMAT0005519 dme-miR-999 32169 Usp7 ucUGUGUCA-GAAUGUCA-AUUGu |:|:| | :||::||| |||| auAUAUAUUGUUUGUAGUCUAACa 2 21 261 284 [dm3:X:11918057-11918080:-] 0.5341 127 0 -13.12 -1.0097 MIMAT0005520 dme-miR-1000 32169 Usp7 ugacgacacuguccUGUUAUa |||||| uuaauuaauaaauuACAAUAa 2 8 1208 1228 [dm3:X:11917113-11917133:-] 0.5229 120 6 -5.41 -0.2324 MIMAT0005024 dme-miR-1011 32169 Usp7 gacgcucgcuaaacuuGGUUAUu |||||| cggaacaaaaaaaaacCCAAUAa 2 8 1434 1456 [dm3:X:11916885-11916907:-] 0.5172 120 6 -6.88 -0.2873

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp7 RAID00246379 dme-miR-1011-3p miRNA MIMAT0005024 Usp7 mRNA 32169 Prediction 0.2202 Usp7 RAID00252071 dme-miR-2a-3p miRNA MIMAT0000106 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID00422857 dme-miR-997-5p miRNA MIMAT0005517 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID00514754 dme-miR-13a-3p miRNA MIMAT0000118 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID00557637 dme-miR-2c-3p miRNA MIMAT0000411 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID00687386 dme-miR-11-3p miRNA MIMAT0000116 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID00692166 dme-miR-988-3p miRNA MIMAT0005505 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID00711141 dme-miR-975-5p miRNA MIMAT0005491 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID00818483 dme-miR-305-5p miRNA MIMAT0000391 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID00961519 dme-miR-6-3p miRNA MIMAT0000111 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID01114486 dme-miR-308-3p miRNA MIMAT0000399 Usp7 mRNA 32169 Prediction 0.2202 Usp7 RAID01359205 dme-miR-992-3p miRNA MIMAT0005510 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID01427816 dme-miR-375-3p miRNA MIMAT0005472 Usp7 mRNA 32169 Prediction 0.2202 Usp7 RAID01908710 dme-miR-987-5p miRNA MIMAT0005504 Usp7 mRNA 32169 Prediction 0.2202 Usp7 RAID01969858 dme-miR-14-3p miRNA MIMAT0000120 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID02217786 dme-miR-5-5p miRNA MIMAT0000110 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID02422414 dme-miR-999-3p miRNA MIMAT0005519 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID02585216 dme-miR-1013-3p miRNA MIMAT0005026 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID02744261 dme-miR-303-5p miRNA MIMAT0000388 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID02765258 dme-miR-986-5p miRNA MIMAT0005503 Usp7 mRNA 32169 Prediction 0.2202 Usp7 RAID02891544 dme-miR-315-5p miRNA MIMAT0000407 Usp7 mRNA 32169 Prediction 0.2202 Usp7 RAID03435760 dme-miR-2b-3p miRNA MIMAT0000107 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID03528216 dme-miR-976-3p miRNA MIMAT0005492 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID03747467 dme-miR-13b-3p miRNA MIMAT0000119 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID03902683 dme-miR-962-5p miRNA MIMAT0005476 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID03908302 dme-miR-991-3p miRNA MIMAT0005509 Usp7 mRNA 32169 Prediction 0.1828 Usp7 RAID03954672 dme-miR-1000-5p miRNA MIMAT0005520 Usp7 mRNA 32169 Prediction 0.2202 Usp7 RAID03965621 dme-miR-137-3p miRNA MIMAT0005507 Usp7 mRNA 32169 Prediction 0.1828