DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 33901 CG16947 cacguuugcuaaaaGUUGUGu |||||| uuguuagcucaagaCAACACa 2 8 102 122 [dm3:2L:6459406-6459426:-] 0.6244 120 6 -10.74 -0.1640 MIMAT0000364 dme-miR-289 33901 CG16947 ucagcgUCC--GAGGUGAAU--UUAUAAAu ||| :|| || | ||||||| cuccagAGGAUUUCAACGCACCAAUAUUUu 2 21 336 365 [dm3:2L:6459163-6459192:-] 0.4156 146 7 -9.52 -0.2753 MIMAT0005475 dme-miR-961 33901 CG16947 uagagucaaugaccaCUAGUUu |||||| aacgcauugaauuuaGAUCAAa 2 8 134 155 [dm3:2L:6459373-6459394:-] 0.6244 120 6 -8.17 -0.1819 MIMAT0005502 dme-miR-985 33901 CG16947 acgggcugguaaccUUGUAAAc ||||||| auaggcauuuaaaaAACAUUUu 2 9 293 314 [dm3:2L:6459214-6459235:-] 0.4156 140 7 -5.36 -0.9733 MIMAT0005521 dme-miR-1001 33901 CG16947 acuaggaacccUCAAAUGGGu | ||||||| auuuaaaaaacAUUUUACCCu 2 11 299 319 [dm3:2L:6459209-6459229:-] 0.4156 142 7 -8.07 -1.0812 MIMAT0011791 dme-miR-2283 33901 CG16947 uaacagcauaaguacUAUAAAAg ||||||| gauuucaacgcaccaAUAUUUUg 2 9 344 366 [dm3:2L:6459162-6459184:-] 0.4156 140 7 -3.45 -0.4930 MIMAT0011791 dme-miR-2283 33901 CG16947 uaacagcauaaguacuAUAAAAg |||||| cgaauuucaaguauucUAUUUUg 2 8 402 424 [dm3:2L:6459104-6459126:-] 0.4517 120 6 -5.62 -0.1144 MIMAT0011791 dme-miR-2283 33901 CG16947 uaacagcauaaguacuAUAAAAg |||||| ucuauuuugcaaaaauUAUUUUg 2 8 416 438 [dm3:2L:6459090-6459112:-] 0.4517 120 6 -3.01 -0.1039 MIMAT0012196 dme-miR-2489 33901 CG16947 ugacGUUUAU-GUU-GUAUGUUau |:|||| :|| ||||||| guauCGAAUAUUAACCAUACAAac 3 19 165 188 [dm3:2L:6459340-6459363:-] 0.6244 144 0 -12.26 -0.1127 MIMAT0012213 dme-miR-2499 33901 CG16947 augccugcacuuacaGUAGGCGUa |||||||| aaaccacagcaucagCAUCCGCAu 2 10 15 38 [dm3:2L:6459490-6459513:-] 0.6244 145 7 -16.38 -0.5186 MIMAT0012531 dme-miR-10-3p 33901 CG16947 uuuggagAGAUCUUGGCUUAAAc |:| | :||||||| auuuaaaUUUUCACUCGAAUUUc 2 17 387 409 [dm3:2L:6459119-6459141:-] 0.4337 148 7 -9.47 -0.9034 MIMAT0012531 dme-miR-10-3p 33901 CG16947 uuuggagagauCUUGGCUUAAAc | |::|||||| gaaaucgaaacGCAUUGAAUUUa 2 13 126 148 [dm3:2L:6459380-6459402:-] 0.6244 132 6 -8.48 -0.1177 MIMAT0000338 dme-miR-277 33901 CG16947 acagcauggucuaucaCGUAAAu |||||| guuucaaucguaauagGCAUUUa 2 8 281 303 [dm3:2L:6459225-6459247:-] 0.4156 120 6 -15.56 -0.2338 MIMAT0000389 dme-miR-31b 33901 CG16947 gucgauaaggcUGUAGAACGGu || ||||||| agcaacaggaaACCUCUUGCCa 2 12 52 73 [dm3:2L:6459455-6459476:-] 0.6244 147 7 -15.96 -0.6486 MIMAT0000400 dme-miR-31a 33901 CG16947 agUCGAU-ACGGCUGUAGAACGGu ||| | | || ||||||| ucAGCAACAGGAAACCUCUUGCCa 2 22 50 73 [dm3:2L:6459455-6459478:-] 0.6244 148 7 -19.19 -0.6449 MIMAT0000406 dme-miR-314 33901 CG16947 ggcUUGAAUAACCGAGCUUAu || || || ||||||| uuuAAAUU-UUCACUCGAAUu 2 19 388 407 [dm3:2L:6459121-6459140:-] 0.4337 152 7 -10.40 -1.0715 MIMAT0000406 dme-miR-314 33901 CG16947 ggcuugaauaaccgAGCUUAu |||||| aauucgagcugguaUCGAAUa 2 8 154 174 [dm3:2L:6459354-6459374:-] 0.6244 120 6 -19.53 -0.1815 MIMAT0005478 dme-miR-964 33901 CG16947 uucaaUUCGAGGGGAUAAGAUu || :|| ||||||| acucgAAUUUCAAGUAUUCUAu 2 18 399 420 [dm3:2L:6459108-6459129:-] 0.4337 149 7 -8.12 -0.8296 MIMAT0005503 dme-miR-986 33901 CG16947 agUCAGUGUUGCGAUAAGCUCu | |:| :|: ||||||| gaAUUUA-GAUCAAAUUCGAGc 2 21 142 162 [dm3:2L:6459366-6459386:-] 0.6244 142 7 -11.07 -1.0010 MIMAT0005512 dme-miR-993 33901 CG16947 ucuauggacaUCUCUGCUCGAag | | |||||| aauuuagaucAAAUUCGAGCUgg 3 14 143 165 [dm3:2L:6459363-6459385:-] 0.6244 121 0 -10.38 -0.1655 MIMAT0005019 dme-miR-1006 33901 CG16947 gauACUUAUUCUUUAGCUUAAAu | ||| | |||||||| auuUAAAUUUUCACUCGAAUUUc 2 21 387 409 [dm3:2L:6459119-6459141:-] 0.4337 152 7 -6.58 -0.9034 MIMAT0005019 dme-miR-1006 33901 CG16947 gaUACUUAUUCUUUAGCUUAAAu || :| || : ||:|||||| aaAUCGA-AACGCAUUGAAUUUa 2 22 127 148 [dm3:2L:6459380-6459401:-] 0.6244 143 6 -8.22 -0.1154 MIMAT0005024 dme-miR-1011 33901 CG16947 gacgCUCGCUAAA----CUUGGUUAUu ||| ||||| | ||||||| uccaGAG-GAUUUCAACGCACCAAUAu 2 20 337 362 [dm3:2L:6459166-6459191:-] 0.4156 152 7 -13.33 -0.4388 MIMAT0005027 dme-miR-1014 33901 CG16947 gacGUUUACUUUUACUUAAAa |:|| : | ||||||| aauCGAAACGCAUUGAAUUUa 2 19 128 148 [dm3:2L:6459380-6459400:-] 0.6244 150 7 -6.17 -1.1786

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG16947 RAID00254635 dme-miR-993-3p miRNA MIMAT0005512 CG16947 mRNA 33901 Prediction 0.1828 CG16947 RAID00494915 dme-miR-314-3p miRNA MIMAT0000406 CG16947 mRNA 33901 Prediction 0.2381 CG16947 RAID00510959 dme-miR-31b-5p miRNA MIMAT0000389 CG16947 mRNA 33901 Prediction 0.2381 CG16947 RAID00653874 dme-miR-966-5p miRNA MIMAT0005481 CG16947 mRNA 33901 Prediction 0.1828 CG16947 RAID00760416 dme-miR-972-3p miRNA MIMAT0005488 CG16947 mRNA 33901 Prediction 0.1828 CG16947 RAID01163111 dme-miR-31a-5p miRNA MIMAT0000400 CG16947 mRNA 33901 Prediction 0.2202 CG16947 RAID01204701 dme-miR-277-3p miRNA MIMAT0000338 CG16947 mRNA 33901 Prediction 0.2202 CG16947 RAID01349097 dme-miR-1011-3p miRNA MIMAT0005024 CG16947 mRNA 33901 Prediction 0.2202 CG16947 RAID01408612 dme-miR-303-5p miRNA MIMAT0000388 CG16947 mRNA 33901 Prediction 0.1828 CG16947 RAID01424592 dme-miR-10-3p miRNA MIMAT0012531 CG16947 mRNA 33901 Prediction 0.2202 CG16947 RAID01587791 dme-miR-961-5p miRNA MIMAT0005475 CG16947 mRNA 33901 Prediction 0.1828 CG16947 RAID01901967 dme-miR-1001-5p miRNA MIMAT0005521 CG16947 mRNA 33901 Prediction 0.1828 CG16947 RAID01924525 dme-miR-1006-3p miRNA MIMAT0005019 CG16947 mRNA 33901 Prediction 0.2202 CG16947 RAID02707099 dme-miR-1014-3p miRNA MIMAT0005027 CG16947 mRNA 33901 Prediction 0.2381 CG16947 RAID02877915 dme-miR-986-5p miRNA MIMAT0005503 CG16947 mRNA 33901 Prediction 0.2381 CG16947 RAID02902713 dme-miR-964-5p miRNA MIMAT0005478 CG16947 mRNA 33901 Prediction 0.2202 CG16947 RAID03474136 dme-miR-985-3p miRNA MIMAT0005502 CG16947 mRNA 33901 Prediction 0.1828