DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 37344 Fem-1 auAGUAAA----GUAUACGUUGCAUUU--AUGu |||||| ||| | : |:||||| ||| aaUCAUUUUGUACAUUUUUUAUGUAAAACUACu 2 26 310 342 [dm3:2R:16550095-16550127:-] 0.5940 120 0 -12.48 -1.1660 MIMAT0005488 dme-miR-972 37344 Fem-1 cggAUUUAUAAGCAUAACAUGu |: | | || | |||||| cuaUGUAAAAUCAUUUUGUACa 2 20 302 323 [dm3:2R:16550114-16550135:-] 0.5940 127 6 -8.26 -0.4467 MIMAT0005489 dme-miR-973 37344 Fem-1 uuUUAGCUUCAAGUUGGUGGUUGGu || |||| | || ||||| | gcAAACGAA-AUAAAAAACCAAACc 2 24 413 436 [dm3:2R:16550001-16550024:-] 0.5940 129 0 -15.24 -0.1052 MIMAT0005502 dme-miR-985 37344 Fem-1 acgggcUGGU-AACCUUGUAAAc |:|| || | |||||| uguaaaAUCAUUUUGUACAUUUu 2 17 305 327 [dm3:2R:16550110-16550132:-] 0.5940 127 6 -8.66 -0.1820 MIMAT0005502 dme-miR-985 37344 Fem-1 acgggcugGUAACC--UUGUAAAc |:|||| |||||| auaagccaCGUUGGAACACAUUUa 2 15 50 73 [dm3:2R:16550364-16550387:-] 0.5940 121 6 -19.53 -0.1740 MIMAT0005502 dme-miR-985 37344 Fem-1 acgggcugguaaccuUGUAAAc |||||| uuuuuaguuuuuuacACAUUUu 2 8 168 189 [dm3:2R:16550248-16550269:-] 0.5940 120 6 -4.33 -0.4035 MIMAT0005509 dme-miR-991 37344 Fem-1 ugaaAGGUUUGAUGUUGA-AAUu || ||: |:|||| ||| uuaaUCAUAAUCAUAACUAUUAa 2 19 273 295 [dm3:2R:16550142-16550164:-] 0.5940 122 0 -7.54 -1.2881 MIMAT0005026 dme-miR-1013 37344 Fem-1 gcUCAAGCCGUAUG-AAAAUa ||||: :| || ||||| uuAGUUUUUUACACAUUUUAu 2 19 171 191 [dm3:2R:16550246-16550266:-] 0.5940 122 0 -5.91 -1.2563 MIMAT0011784 dme-miR-2279* 37344 Fem-1 uuAAAGUGUGUGUCUAUAAAUu |||:|||||: |||||| uuUUUUACACAU-UUUAUUUAg 2 21 175 195 [dm3:2R:16550242-16550262:-] 0.5940 138 6 -14.74 -0.3657 MIMAT0011784 dme-miR-2279* 37344 Fem-1 uuaAAGUGUGUG-UCUAUAAAUu ||||| | : | |||||| uacUUCACUCUUAAUUUAUUUAc 2 20 198 220 [dm3:2R:16550217-16550239:-] 0.5940 126 6 -5.89 -0.2743 MIMAT0011787 dme-miR-2280* 37344 Fem-1 agucaaucgaaccuuCAUUUAa |||||| aaaccaaaccaauauGUAAAUc 2 8 427 448 [dm3:2R:16549989-16550010:-] 0.5940 120 6 -2.21 -0.1305 MIMAT0012196 dme-miR-2489 37344 Fem-1 ugacgUUUAUGUUGUAUGUUAu || |:::| ||||||| auuagAACUGUGA-AUACAAUa 2 18 32 52 [dm3:2R:16550385-16550405:-] 0.5940 151 7 -15.12 -1.0861 MIMAT0012196 dme-miR-2489 37344 Fem-1 ugACGUUUAUGUUGUAUGUUAu | :| ||||| |||||| aaUUUAUUUACAA-UUACAAUc 2 21 210 230 [dm3:2R:16550207-16550227:-] 0.5940 126 6 -9.06 -0.1131 MIMAT0012205 dme-miR-2495* 37344 Fem-1 ccgcccGUA-AAGUUAAUCCACGgc :|| ||: |||||||| auugauUAUGUUUUUUUAGGUGCaa 3 19 392 416 [dm3:2R:16550021-16550045:-] 0.5940 137 0 -14.11 -0.1457 MIMAT0012215 dme-miR-2500 37344 Fem-1 gacuccAGGUGUGUGUUUUAGg | | :|:::|||||| uaaucaUACCUAUGUAAAAUCa 2 17 293 314 [dm3:2R:16550123-16550144:-] 0.5940 136 6 -11.50 -0.3519 MIMAT0012217 dme-miR-2501* 37344 Fem-1 uuucuuucAAAC-UAACGUUCUCa || | | |||||||| uacuauuaUUCGCAGUGCAAGAGg 2 16 339 362 [dm3:2R:16550075-16550098:-] 0.5940 150 7 -11.84 -0.4023 MIMAT0000114 dme-miR-9a 37344 Fem-1 agUAUG-UCGAUCUAUUGGUUUcu | || | || | ||||||| gcAAACGAAAUAAAAAACCAAAcc 3 22 413 436 [dm3:2R:16550001-16550024:-] 0.5940 136 0 -8.83 -0.2505 MIMAT0012531 dme-miR-10-3p 37344 Fem-1 uuuggagagaucuuGGCUUAAAc :||||||| augugcgauauguuUCGAAUUUa 2 10 105 127 [dm3:2R:16550310-16550332:-] 0.5940 141 7 -9.56 -1.1849 MIMAT0012531 dme-miR-10-3p 37344 Fem-1 uuuggagagaucUUGGCUUAAac ||:|||||| cuaaguugaaucAAUCGAAUUga 3 12 374 396 [dm3:2R:16550041-16550063:-] 0.5940 131 0 -11.21 -0.2378 MIMAT0000319 dme-miR-263a 37344 Fem-1 cacuUAAGAAGGUCACGGUAAUUg :||: |::: :|||||| gacuGUUUGUUUGUAAUCAUUAAu 2 21 254 277 [dm3:2R:16550160-16550183:-] 0.5940 132 6 -7.55 -0.1263 MIMAT0000334 dme-miR-92a 37344 Fem-1 uauccggcccuGUUCACGUUac :|:|||||| uuauguuuuuuUAGGUGCAAac 3 12 397 418 [dm3:2R:16550019-16550040:-] 0.5940 127 0 -9.93 -0.1138 MIMAT0000335 dme-miR-219 37344 Fem-1 guucuuaacgcaaaccUGUUAGu |||||| uaauuuauuuacaauuACAAUCu 2 8 209 231 [dm3:2R:16550206-16550228:-] 0.5940 120 6 -4.90 -0.1234 MIMAT0000355 dme-miR-210 37344 Fem-1 aucggcGACAGUG-UG-CGUGUu |||| || || ||||| uacaauCUGUAACAACUGCACAc 2 16 224 246 [dm3:2R:16550191-16550213:-] 0.5940 122 0 -14.45 -0.8615 MIMAT0000358 dme-miR-92b 37344 Fem-1 cguccggcccuGAU-CACGUUaa :|| |||||| auuauguuuuuUUAGGUGCAAac 3 12 396 418 [dm3:2R:16550019-16550041:-] 0.5940 122 0 -7.17 -0.1138 MIMAT0000392 dme-miR-9c 37344 Fem-1 agaugucgAUCUUAUGGUUUcu || || |||||| aaacgaaaUAAAAAACCAAAcc 3 15 415 436 [dm3:2R:16550001-16550022:-] 0.5940 134 0 -6.49 -0.2505 MIMAT0000395 dme-miR-9b 37344 Fem-1 guaugucgAUUUUAGUGGUUUcu ||||| |||||| aaacgaaaUAAAA-AACCAAAcc 3 16 415 436 [dm3:2R:16550001-16550022:-] 0.5940 133 0 -9.07 -0.2461 MIMAT0000402 dme-miR-310 37344 Fem-1 uuuccggcccuUCACACGUUau || |||||| uauguuuuuuuAG-GUGCAAac 3 12 398 418 [dm3:2R:16550019-16550039:-] 0.5940 121 0 -7.57 -0.1054 MIMAT0000403 dme-miR-311 37344 Fem-1 agUCCGGCCACUUACACGUUau | |:: | | |||||| uuAUGUUUUUUUAGGUGCAAac 3 21 397 418 [dm3:2R:16550019-16550040:-] 0.5940 124 0 -6.76 -0.1127 MIMAT0000404 dme-miR-312 37344 Fem-1 agUCCGGCAGAGUUCACGUUau | |:: |:|:|:|||||| uuAUGUUUUUUUAGGUGCAAac 3 21 397 418 [dm3:2R:16550019-16550040:-] 0.5940 144 0 -13.91 -0.1116 MIMAT0000405 dme-miR-313 37344 Fem-1 agccCGACACUUUUCACGUUau |:| | |:|||||| uuauGUUUUUUUAGGUGCAAac 3 19 397 418 [dm3:2R:16550019-16550040:-] 0.5940 130 0 -9.03 -0.1094 MIMAT0000407 dme-miR-315 37344 Fem-1 cgAAAGACUCGUUGUUAGUUUu ||| | | || :||||| | ugUUUGUAAUCAUUAAUCAUAa 2 21 261 282 [dm3:2R:16550155-16550176:-] 0.5940 132 0 -7.42 -0.1154 MIMAT0000412 dme-miR-iab-4-5p 37344 Fem-1 aguccuAUGUAAGUCAUAUGca | :|||:||||||| acacauUUUAUUUAGUAUACuu 3 17 181 202 [dm3:2R:16550235-16550256:-] 0.5940 144 0 -13.11 -0.2058 MIMAT0000413 dme-miR-iab-4-3p 37344 Fem-1 caaugcAUAUGACUUCCAUAUGGc | ||:| | ||||||: acacauUUUAUUUA--GUAUACUu 2 19 181 202 [dm3:2R:16550235-16550256:-] 0.5940 131 0 -6.57 -0.1897 MIMAT0005479 dme-miR-932 37344 Fem-1 gacguuacgugaugcCUUAACu |||||| uaaguugaaucaaucGAAUUGa 2 8 375 396 [dm3:2R:16550041-16550062:-] 0.5940 120 6 -10.93 -0.2665 MIMAT0005484 dme-miR-968 37344 Fem-1 guUG-GGAAAUUAC-CUAUGAUGAau || ::||| ||| | |||||| guACAUUUUUUAUGUAAAACUACUau 3 23 319 344 [dm3:2R:16550093-16550118:-] 0.5940 140 0 -11.63 -0.1113 MIMAT0005485 dme-miR-969 37344 Fem-1 uuUUGAACGAAUC-ACCUUGag ||: || | |||||| acAAUAAGCCACGUUGGAACac 3 20 47 68 [dm3:2R:16550369-16550390:-] 0.5940 122 0 -8.11 -0.1046 MIMAT0005486 dme-miR-970 37344 Fem-1 uaUCGGCGCACACAGA-AUACu |||: :| |||||| |||| gaAGCUUUG-GUGUCUGUAUGu 2 20 88 108 [dm3:2R:16550329-16550349:-] 0.5940 129 0 -18.60 -0.4207 MIMAT0005506 dme-miR-989 37344 Fem-1 caAGGUGAUGCA-GUGUAGUGu |::|:| || :|| |||| auUUUAUUUAGUAUACUUCACu 2 20 185 206 [dm3:2R:16550231-16550252:-] 0.5940 122 0 -10.29 -0.1079 MIMAT0005019 dme-miR-1006 37344 Fem-1 gaUAC-UUAUUCUUUAGCUUAAAu :|| :||| | |||||||| auGUGCGAUAUG-UUUCGAAUUUa 2 22 105 127 [dm3:2R:16550310-16550332:-] 0.5940 150 7 -14.49 -1.1814 MIMAT0005019 dme-miR-1006 37344 Fem-1 gauACUUAUUCUUUAGCUUAAau ||||| ||||||||| aguUGAAU---CAAUCGAAUUga 3 21 377 396 [dm3:2R:16550041-16550060:-] 0.5940 140 0 -10.64 -0.2399 MIMAT0005024 dme-miR-1011 37344 Fem-1 gacgcucgcuaaacUUGGUUAUu |||||||| gaaauaaaaaaccaAACCAAUAu 2 10 419 441 [dm3:2R:16549996-16550018:-] 0.5940 145 7 -7.93 -1.2067

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Fem-1 RAID00152241 dme-miR-219-5p miRNA MIMAT0000335 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID00170944 dme-miR-33-5p miRNA MIMAT0000342 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID00228339 dme-miR-313-3p miRNA MIMAT0000405 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID00236146 dme-miR-972-3p miRNA MIMAT0005488 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID00312699 dme-miR-92b-3p miRNA MIMAT0000358 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID00349788 dme-miR-iab-4-3p miRNA MIMAT0000413 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID00527971 dme-miR-968-5p miRNA MIMAT0005484 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID00758890 dme-miR-315-5p miRNA MIMAT0000407 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID01121325 dme-miR-9a-5p miRNA MIMAT0000114 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID01173061 dme-miR-1000-5p miRNA MIMAT0005520 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID01627971 dme-miR-1014-3p miRNA MIMAT0005027 Fem-1 mRNA 37344 Prediction 0.2202 Fem-1 RAID01659267 dme-miR-310-3p miRNA MIMAT0000402 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID01761439 dme-miR-1006-3p miRNA MIMAT0005019 Fem-1 mRNA 37344 Prediction 0.2202 Fem-1 RAID02074662 dme-miR-312-3p miRNA MIMAT0000404 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID02374365 dme-miR-9c-5p miRNA MIMAT0000392 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID02631287 dme-miR-985-3p miRNA MIMAT0005502 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID02735722 dme-miR-969-5p miRNA MIMAT0005485 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID03066414 dme-miR-1011-3p miRNA MIMAT0005024 Fem-1 mRNA 37344 Prediction 0.2202 Fem-1 RAID03078327 dme-miR-92a-3p miRNA MIMAT0000334 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID03079877 dme-miR-9b-5p miRNA MIMAT0000395 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID03116864 dme-miR-10-3p miRNA MIMAT0012531 Fem-1 mRNA 37344 Prediction 0.2202 Fem-1 RAID03399945 dme-miR-263a-5p miRNA MIMAT0000319 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID03409636 dme-miR-932-5p miRNA MIMAT0005479 Fem-1 mRNA 37344 Prediction 0.2381 Fem-1 RAID03450413 dme-miR-989-3p miRNA MIMAT0005506 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID03677907 dme-miR-210-3p miRNA MIMAT0000355 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID03815566 dme-miR-iab-4-5p miRNA MIMAT0000412 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID03891090 dme-miR-970-3p miRNA MIMAT0005486 Fem-1 mRNA 37344 Prediction 0.1828 Fem-1 RAID03900024 dme-miR-311-3p miRNA MIMAT0000403 Fem-1 mRNA 37344 Prediction 0.1828