DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 39093 CG3529 auagUAAAGUAUACGUUGCAUU-UAUGu || |:||| || | ||| |||| ucaaAUGUUAUACACACCCUAACAUACu 2 24 45 72 [dm3:3L:9443574-9443601:+] 0.5409 135 0 -7.49 -0.9225 MIMAT0000343 dme-miR-280 39093 CG3529 auaguaaaguauacgUUGCAUUUAUGu ||:| |||||| gaaaaacuaaaacaaAAUGGAAAUACa 2 13 314 340 [dm3:3L:9443843-9443869:+] 0.4606 124 6 -9.62 -0.1412 MIMAT0000343 dme-miR-280 39093 CG3529 auaGUAAAGUAUACGU-UGCAUUUAUGu :|||| |:| :| : || |||| gucUAUUUGUUGUUUAUUUAUACAUACa 2 25 253 280 [dm3:3L:9443782-9443809:+] 0.7123 123 0 -6.10 -0.4367 MIMAT0000360 dme-miR-287 39093 CG3529 caCGUUUGCUAAAAGUU-GUGu | |||: |||||| ||| auGGAAAUACAUUUCAAGCACa 2 20 330 351 [dm3:3L:9443859-9443880:+] 0.4606 123 0 -12.49 -1.1859 MIMAT0005464 dme-miR-iab-4as-3p 39093 CG3529 auuugCAUAUGACUUACAUAGg ||| |:| |||||||: ugaugGUA-AUUUAAUGUAUUa 2 18 224 244 [dm3:3L:9443753-9443773:+] 0.6432 143 0 -9.81 -0.1543 MIMAT0005488 dme-miR-972 39093 CG3529 cggAUUU--AUAAGCAUAACAUGu |||| || |: |||| ||| uuaUAAAGCUAAUU-UAUUUUACa 2 20 281 303 [dm3:3L:9443810-9443832:+] 0.7123 124 0 -4.69 -0.3791 MIMAT0005499 dme-miR-983 39093 CG3529 aguaAUCAAGCUUUGCAUAAUa || ||: ||:|||||| auggUAAUUU--AAUGUAUUAc 2 19 226 245 [dm3:3L:9443755-9443774:+] 0.6432 139 6 -9.09 -0.1913 MIMAT0005018 dme-miR-1005 39093 CG3529 gacgcuUAAUU--UCUAAGGUcu |||:| | |||||| auaacuAUUGAUUAUAUUCCAaa 3 16 153 175 [dm3:3L:9443682-9443704:+] 0.5409 130 0 -7.09 -0.2972 MIMAT0005026 dme-miR-1013 39093 CG3529 gcucaagccgUAUGAAAAUa ||:|||||| uuuauguaaaAUGCUUUUAu 2 11 113 132 [dm3:3L:9443642-9443661:+] 0.5409 134 6 -8.99 -0.2222 MIMAT0011784 dme-miR-2279* 39093 CG3529 uuaaagugugugucuAUAAAUu |||||| agucuauuuguuguuUAUUUAu 2 8 252 273 [dm3:3L:9443781-9443802:+] 0.7123 120 6 -1.27 -0.3018 MIMAT0011786 dme-miR-2280 39093 CG3529 uauaaaaUAACGGUUCGAUUcu ||| : ||||||| uacauacAUUAUAAAGCUAAuu 3 16 273 294 [dm3:3L:9443802-9443823:+] 0.7123 135 0 -5.81 -0.6766 MIMAT0011788 dme-miR-2281* 39093 CG3529 aacGUAGACGUCGACGUCUAUua :||:|| | : ||||||| gucUAUUUG-A-UAGCAGAUAca 3 21 83 103 [dm3:3L:9443612-9443632:+] 0.5409 132 0 -13.37 -0.1018 MIMAT0011791 dme-miR-2283 39093 CG3529 uaacagcauaaguacuAUAAAAg |||||| uuauguaaaaugcuuuUAUUUUu 2 8 114 136 [dm3:3L:9443643-9443665:+] 0.5409 120 6 -6.56 -0.1455 MIMAT0011791 dme-miR-2283 39093 CG3529 uaacagcauaaguacuAUAAAAg |||||| cauuauaaagcuaauuUAUUUUa 2 8 279 301 [dm3:3L:9443808-9443830:+] 0.7123 120 6 -0.86 -0.6382 MIMAT0012196 dme-miR-2489 39093 CG3529 ugACGUUUAUGU-UGUAUGUUAu ||: || :| ||||||| | guUGUUUAUUUAUACAUACAUUa 2 21 261 283 [dm3:3L:9443790-9443812:+] 0.7123 127 0 -11.15 -0.3047 MIMAT0012198 dme-miR-2491 39093 CG3529 ucguugacguuuccgUUGUCGc |||||| uuuauuuuuuacaaaAACAGCa 2 8 128 149 [dm3:3L:9443657-9443678:+] 0.5409 120 6 -8.36 -0.3377 MIMAT0012199 dme-miR-2492 39093 CG3529 aaacuuucgagagcuGUUUUGUa :|||||| aucgaaaagaaaaacUAAAACAa 2 9 306 328 [dm3:3L:9443835-9443857:+] 0.4384 124 6 -6.76 -0.1506 MIMAT0012201 dme-miR-2493 39093 CG3529 ugcGGAGCGUGU-UUAUGUGUGcc ::|| |:: |||||||| cucUUUCAAAUGUUAUACACACcc 3 21 40 63 [dm3:3L:9443569-9443592:+] 0.5409 131 0 -12.23 -0.1742 MIMAT0012208 dme-miR-2497* 39093 CG3529 uuGUUGAUGUAAAACG--UUACGAAug :||| || || ||: ||||||| agUAAC-ACUUUAUGUAAAAUGCUUuu 3 24 105 130 [dm3:3L:9443634-9443659:+] 0.5409 144 0 -12.38 -0.1421 MIMAT0012215 dme-miR-2500 39093 CG3529 gacuccAGGU-GUGUGUUUUAGg |::| : :|||||||| agcuaaUUUAUUUUACAAAAUCg 2 17 287 309 [dm3:3L:9443816-9443838:+] 0.5754 147 7 -10.50 -1.2828 MIMAT0012215 dme-miR-2500 39093 CG3529 gacuccaGGUGUGUGUUUUAgg |:| | ||||||| agaaaaaCUA-AAACAAAAUgg 3 16 313 333 [dm3:3L:9443842-9443862:+] 0.4384 129 0 -7.17 -0.1322 MIMAT0012531 dme-miR-10-3p 39093 CG3529 uuugGAGAGAUCUUGGCUUAAAc | :| || || | ||||| cauaCAUUAUA-AAGCUAAUUUa 2 20 275 296 [dm3:3L:9443804-9443825:+] 0.7123 121 0 -2.42 -0.2558 MIMAT0000365 dme-bantam 39093 CG3529 uuagucgaaaguuuUACUAGAGu :||||||| --------------GUGAUCUCc 2 10 1 9 [dm3:3L:9443530-9443538:+] 0.5409 141 7 -8.94 -0.1001 MIMAT0000408 dme-miR-316 39093 CG3529 gcggucaUUCGCCUUUUUCUgu || || |||||| uuuacaaAAUCG--AAAAGAaa 3 16 298 317 [dm3:3L:9443827-9443846:+] 0.5754 124 0 -8.06 -0.2436 MIMAT0000412 dme-miR-iab-4-5p 39093 CG3529 agUCCUAUGUAAGU--CAU-AUGCa | |:|| |||:| ||| |||| ugAUGGUA-AUUUAAUGUAUUACGu 2 21 224 247 [dm3:3L:9443753-9443776:+] 0.6432 121 0 -10.40 -1.1694 MIMAT0005463 dme-miR-iab-4as-5p 39093 CG3529 gccAUAUGGAAGUCAUAUGCAUu |:| :|| ||||| || auuUGUUGUUUAUUUAUACAUAc 2 21 257 279 [dm3:3L:9443786-9443808:+] 0.7123 120 0 -7.00 -0.1376 MIMAT0005476 dme-miR-962 39093 CG3529 cugucGUAGUUAAAGA-G-AUGGAAUa ::|: |||| | | ||| ||| uuuguUGUUUAUUUAUACAUACAUUAu 2 21 258 284 [dm3:3L:9443787-9443813:+] 0.7123 122 0 -5.68 -0.1241 MIMAT0005478 dme-miR-964 39093 CG3529 uucAAUUCGAGGGGAUAAGAUu | ||||| ::||||:|| uuaUAAAGCUAAUUUAUUUUAc 2 20 281 302 [dm3:3L:9443810-9443831:+] 0.7123 147 0 -12.79 -0.1246 MIMAT0005492 dme-miR-976 39093 CG3529 cgUAACUACUAUUGAUUAGGUu | | |||| | || |||| uaACUAUUGAUUA-UAUUCCAa 2 21 154 174 [dm3:3L:9443683-9443703:+] 0.5409 122 0 -11.64 -0.1111 MIMAT0005497 dme-miR-981 39093 CG3529 acguccaaagcaGCUGUUGCUu | :|||||| uuuuuacaaaaaCAGCAACGAu 2 11 133 154 [dm3:3L:9443662-9443683:+] 0.5409 126 6 -8.71 -0.1768 MIMAT0005504 dme-miR-987 39093 CG3529 guaguUAGGUCUGAUAAAUGAAAu || || : |||||:||| acauuAUAAAGCUAAUUUAUUUUa 2 20 278 301 [dm3:3L:9443807-9443830:+] 0.7123 143 0 -13.43 -0.2348 MIMAT0005507 dme-miR-137 39093 CG3529 gaUGCACAUAAGAGUUCG-UUAu || | ||| | |||| ||| auACAUACAUUAUAAAGCUAAUu 2 21 272 294 [dm3:3L:9443801-9443823:+] 0.7123 124 0 -5.32 -1.3424 MIMAT0005507 dme-miR-137 39093 CG3529 gaugcacauaAGAGUUCGU-UAu |:||||||| || uggaaauacaUUUCAAGCACAUa 2 13 331 353 [dm3:3L:9443860-9443882:+] 0.4606 120 0 -11.23 -0.6145 MIMAT0005019 dme-miR-1006 39093 CG3529 gaUACUUAUUCUUUAGCUUAAAu || || | ||| | ||||| acAUACAUUAUAAAGCUAAUUUa 2 22 274 296 [dm3:3L:9443803-9443825:+] 0.7123 133 0 -1.94 -0.2535

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CG3529 RAID00399739 dme-miR-962-5p miRNA MIMAT0005476 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID00661909 dme-miR-1006-3p miRNA MIMAT0005019 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID00934373 dme-miR-964-5p miRNA MIMAT0005478 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID01468890 dme-miR-137-3p miRNA MIMAT0005507 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID01652138 dme-miR-7-5p miRNA MIMAT0000112 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID01807279 dme-miR-10-3p miRNA MIMAT0012531 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID02186054 dme-miR-316-5p miRNA MIMAT0000408 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID02397556 dme-miR-987-5p miRNA MIMAT0005504 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID02504357 dme-miR-981-3p miRNA MIMAT0005497 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID02565720 dme-bantam-3p miRNA MIMAT0000365 CG3529 mRNA 39093 Prediction 0.2202 CG3529 RAID02945293 dme-miR-976-3p miRNA MIMAT0005492 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID03146753 dme-miR-iab-8-5p miRNA MIMAT0005463 CG3529 mRNA 39093 Prediction 0.1828 CG3529 RAID03194823 dme-miR-iab-4-5p miRNA MIMAT0000412 CG3529 mRNA 39093 Prediction 0.1828