DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000336 dme-miR-276* 40548 CG9772 gcaUC-CUUGAG-----AUAU-GGAGCGAc || |||||: |||: ||||||| ugcAGUGAACUUAAGAGUAUGCCCUCGCUa 2 21 657 686 [dm3:3R:161427-161456:-] 0.6248 149 7 -20.77 -0.7671 MIMAT0000343 dme-miR-280 40548 CG9772 auAGUAAAGUAUACGUUGCAUUUAUgu ||| |||| | |||| |||||| ucUCAAUUCA-A--CAACAUAAAUAau 3 26 76 99 [dm3:3R:161166-161189:-] 0.6348 152 0 -10.59 -0.1467 MIMAT0000360 dme-miR-287 40548 CG9772 cacguuugcuaaAAGUUGUgu ||||||| uuuuauucucaaUUCAACAac 3 10 70 90 [dm3:3R:161175-161195:-] 0.6348 125 0 -7.34 -0.3513 MIMAT0000360 dme-miR-287 40548 CG9772 cacguuugcuaaAAGUUGUgu ||||||| uuuuauucucaaUUCAACAac 3 10 918 938 [dm3:3R:161175-161195:-] 0.6348 125 0 -7.34 -0.2263 MIMAT0000360 dme-miR-287 40548 CG9772 cacguuugcuaaAAGUUGUgu ||||||| uuuuauucucaaUUCAACAac 3 10 70 90 [dm3:3R:161175-161195:-] 0.6348 125 0 -7.34 -0.6247 MIMAT0000364 dme-miR-289 40548 CG9772 ucagcguccgagGUGAAUUUAUAAAu ::|| :||||||| ugaaguucaagaUGCUGGAAUAUUUg 2 15 539 564 [dm3:3R:161549-161574:-] 0.5960 150 7 -11.85 -0.2032 MIMAT0005473 dme-miR-959 40548 CG9772 aagUAUUA-UGGGG--GCUACUGUu ||| | | |:| :||||||| agaAUAUUGAGCUCGAUGAUGACAu 2 20 188 212 [dm3:3R:161964-161988:-] 0.6591 149 7 -15.76 -0.7665 MIMAT0005491 dme-miR-975 40548 CG9772 uaUGUCCUACAU-CCUUCACAAAu :|| || || ||||||||| uuGCACCAUAUACAGAAGUGUUUa 2 22 62 85 [dm3:3R:162091-162114:-] 0.6591 160 7 -14.13 -0.8620 MIMAT0005502 dme-miR-985 40548 CG9772 acgggcugguaaccuUGUAAAc |||||| acaacauaaauaaucACAUUUa 2 8 86 107 [dm3:3R:161158-161179:-] 0.6348 120 6 -4.24 -0.4771 MIMAT0005502 dme-miR-985 40548 CG9772 acgggcugguaaccuUGUAAAc |||||| acaacauaaauaaucACAUUUa 2 8 934 955 [dm3:3R:161158-161179:-] 0.6348 120 6 -4.24 -0.3215 MIMAT0010206 dme-miR-995* 40548 CG9772 gcGUCGAGGG---UGUAUUAAGCCc || :|||| || |||||||| caCAUUUCCCCCAACUUAAUUCGGc 2 21 382 406 [dm3:3R:161770-161794:-] 0.6591 163 7 -20.50 -0.6745 MIMAT0005018 dme-miR-1005 40548 CG9772 gacgcuuaauuucUAAGGUCu ||||||| ccgaugcuaucuuAUUCCAGc 2 9 573 593 [dm3:3R:161520-161540:-] 0.6104 140 7 -11.17 -0.8170 MIMAT0005021 dme-miR-1008 40548 CG9772 acAUUUGUGUUUUUCGACAcu ||| |||| |||||| aaUAAUCACAUUUAGCUGUuc 3 20 94 114 [dm3:3R:161151-161171:-] 0.6348 143 0 -13.31 -0.2567 MIMAT0005021 dme-miR-1008 40548 CG9772 acAUUUGUGUUUUUCGACAcu ||| |||| |||||| aaUAAUCACAUUUAGCUGUuc 3 20 942 962 [dm3:3R:161151-161171:-] 0.6348 143 0 -13.31 -0.1600 MIMAT0011785 dme-miR-2279 40548 CG9772 uuUAUUUAUAGAAGCG-CACUUu :| | | || |:|| ||||| caGUCAUUUUCCUUGCAGUGAAc 2 21 644 666 [dm3:3R:161447-161469:-] 0.6248 124 0 -8.83 -1.0162 MIMAT0012194 dme-miR-307-as* 40548 CG9772 gguaguGUUGGAGGAAC-UCACu || ::|||||| |||| cccaguCAUUUUCCUUGCAGUGa 2 17 642 664 [dm3:3R:161449-161471:-] 0.6248 128 0 -24.37 -0.9246 MIMAT0012202 dme-miR-2494* 40548 CG9772 aaGGGUUA-GACCAC-GUGAAUg ||::|| ||| | |||||| cgCCUGAUGAUGGAGUCACUUAc 2 20 292 314 [dm3:3R:161862-161884:-] 0.6591 126 6 -19.55 -0.3631 MIMAT0012206 dme-miR-2496* 40548 CG9772 augCUACCGGAGAGUGUGUG-CGUg |||| || ||: |||| ||| uggGAUG--CUGUCGGACACUGCAa 2 22 704 726 [dm3:3R:161387-161409:-] 0.6248 126 0 -20.90 -0.5987 MIMAT0000106 dme-miR-2a 40548 CG9772 cgaGUAGUUUCGA-CCGAC-ACUAu || ||: |:| | ||| |||| gucCAACAGUGUUCGCCUGAUGAUg 2 21 279 303 [dm3:3R:161873-161897:-] 0.6591 123 0 -12.98 -0.2216 MIMAT0012531 dme-miR-10-3p 40548 CG9772 uuUGGA-GAGAU-CUUGGCUUAAAc :|:| | :|| | ::|||||| cuGCUUCCGUUACCAUUUGAAUUUg 2 22 13 37 [dm3:3R:161228-161252:-] 0.6348 131 6 -14.76 -0.1174 MIMAT0012531 dme-miR-10-3p 40548 CG9772 uuUGGA-GAGAU-CUUGGCUUAAAc :|:| | :|| | ::|||||| cuGCUUCCGUUACCAUUUGAAUUUg 2 22 13 37 [dm3:3R:161228-161252:-] 0.6348 131 6 -14.76 -0.1274 MIMAT0000350 dme-miR-34 40548 CG9772 guguUGGUCGAUUGGUGUGACGGu ||:| :|: || ||||||| ugacACUA-UUGUCC-CACUGCCg 2 21 143 164 [dm3:3R:162012-162033:-] 0.6591 152 7 -23.11 -0.2500 MIMAT0000350 dme-miR-34 40548 CG9772 guguuggucgauuggugUGACGGu |||||| gaaguccuugagaaacaACUGCCa 2 8 729 752 [dm3:3R:161361-161384:-] 0.6248 120 6 -16.74 -0.1206 MIMAT0000357 dme-miR-100 40548 CG9772 guGUUCAAGCCUA----AAUGCC-CAa :|||| ||||| |||||| || ccUAAGUGCGGAUGCUGUUACGGCGUu 2 21 348 374 [dm3:3R:161802-161828:-] 0.6591 131 0 -22.04 -0.3276 MIMAT0000362 dme-miR-263b 40548 CG9772 cacuuaagagggucACGGUUc |||||| ccuugagaaacaacUGCCAAa 2 8 734 754 [dm3:3R:161359-161379:-] 0.6248 120 6 -8.38 -0.1703 MIMAT0000399 dme-miR-308 40548 CG9772 gagUGUCAUAUUAGGAC-ACUAa |||||:| |||| |||| ccaACAGUGUUCGCCUGAUGAUg 2 20 281 303 [dm3:3R:161873-161895:-] 0.6591 131 0 -19.66 -0.2137 MIMAT0000411 dme-miR-2c 40548 CG9772 cgGGUAGUUUCGA-CCGAC-ACUAu ||| ||: |:| | ||| |||| guCCAACAGUGUUCGCCUGAUGAUg 2 22 279 303 [dm3:3R:161873-161897:-] 0.6591 128 0 -18.89 -0.2216 MIMAT0005467 dme-miR-190 40548 CG9772 guuGGUUCUUAUAGUUUGUAUAGa |:||| | |:||||||||| agcCUAAGCAGCUUAAACAUAUCg 2 22 316 339 [dm3:3R:161837-161860:-] 0.6591 173 7 -16.41 -0.7873 MIMAT0005478 dme-miR-964 40548 CG9772 uucaauUCGAGGGGAUAAGAuu ||:| :::|||||| uaacgcAGUUAUUUUAUUCUca 3 17 59 80 [dm3:3R:161185-161206:-] 0.6348 136 0 -10.48 -0.2392 MIMAT0005478 dme-miR-964 40548 CG9772 uucaauUCGAGGGGAUAAGAuu ||:| :::|||||| uaacgcAGUUAUUUUAUUCUca 3 17 907 928 [dm3:3R:161185-161206:-] 0.6348 136 0 -10.48 -0.1483 MIMAT0005478 dme-miR-964 40548 CG9772 uucaauUCGAGGGGAUAAGAuu ||:| :::|||||| uaacgcAGUUAUUUUAUUCUca 3 17 59 80 [dm3:3R:161185-161206:-] 0.6348 136 0 -10.48 -0.2671 MIMAT0005487 dme-miR-971 40548 CG9772 agUGACAUUCUU-CAUUGUGGUu |:|| || |: |||||||| ugAUUGCAAUAGUCUAACACCAa 2 21 498 520 [dm3:3R:161593-161615:-] 0.5960 159 7 -15.09 -1.1318 MIMAT0005492 dme-miR-976 40548 CG9772 cguaacuacUAUUGAUUAG-GUu |||| ||||| || uucaacaacAUAAAUAAUCACAu 2 14 82 104 [dm3:3R:161161-161183:-] 0.6348 121 0 -4.89 -1.2939 MIMAT0005492 dme-miR-976 40548 CG9772 cguaacuacUAUUGAUUAG-GUu |||| ||||| || uucaacaacAUAAAUAAUCACAu 2 14 930 952 [dm3:3R:161161-161183:-] 0.6348 121 0 -4.89 -1.2437 MIMAT0005513 dme-miR-994 40548 CG9772 uagugccGAUGAUAAAGG-AAUc ||:||: |||| ||| cucgacuCUGCUGCUUCCGUUAc 2 16 3 25 [dm3:3R:161240-161262:-] 0.6972 123 0 -14.03 -1.2490 MIMAT0005513 dme-miR-994 40548 CG9772 uagugccGAUGAUAAAGG-AAUc ||:||: |||| ||| cucgacuCUGCUGCUUCCGUUAc 2 16 851 873 [dm3:3R:161240-161262:-] 0.6972 123 0 -14.03 -0.9280 MIMAT0005513 dme-miR-994 40548 CG9772 uagugccGAUGAUAAAGG-AAUc ||:||: |||| ||| cucgacuCUGCUGCUUCCGUUAc 2 16 3 25 [dm3:3R:161240-161262:-] 0.6972 123 0 -14.03 -1.2082 MIMAT0005019 dme-miR-1006 40548 CG9772 gauacuUAUUCUUUAGCUUAAAu :| | | |:|||||| gcuuccGUUACCAUUUGAAUUUg 2 18 15 37 [dm3:3R:161228-161250:-] 0.6348 133 6 -7.25 -0.1174 MIMAT0005019 dme-miR-1006 40548 CG9772 gauacuUAUUCUUUAGCUUAAAu :| | | |:|||||| gcuuccGUUACCAUUUGAAUUUg 2 18 15 37 [dm3:3R:161228-161250:-] 0.6348 133 6 -7.25 -0.1274 MIMAT0005024 dme-miR-1011 40548 CG9772 gaCGCUCGCUAAACUUGGU-UAUu || || ||||| |||| ||| gaGCCCGC-AUUUGCACCAUAUAc 2 22 52 74 [dm3:3R:162102-162124:-] 0.6591 131 0 -11.85 -0.6468 MIMAT0005027 dme-miR-1014 40548 CG9772 gacguuuacuuuuACUUAAAa ||||||| uuccguuaccauuUGAAUUUg 2 9 17 37 [dm3:3R:161228-161248:-] 0.6348 140 7 -4.95 -0.9963 MIMAT0005027 dme-miR-1014 40548 CG9772 gacguuuacuuuuACUUAAAa ||||||| uuccguuaccauuUGAAUUUg 2 9 865 885 [dm3:3R:161228-161248:-] 0.6348 140 7 -4.95 -0.8220 MIMAT0005027 dme-miR-1014 40548 CG9772 gacguuuacuuuuACUUAAAa ||||||| uuccguuaccauuUGAAUUUg 2 9 17 37 [dm3:3R:161228-161248:-] 0.6348 140 7 -4.95 -1.0201

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Skp2 RAID00005611 dme-miR-263b-5p miRNA MIMAT0000362 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID00425885 dme-miR-190-5p miRNA MIMAT0005467 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID00605933 dme-miR-985-3p miRNA MIMAT0005502 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID00947771 dme-miR-976-3p miRNA MIMAT0005492 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID01686915 dme-miR-2a-3p miRNA MIMAT0000106 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID01705340 dme-miR-1011-3p miRNA MIMAT0005024 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID01809544 dme-miR-34-5p miRNA MIMAT0000350 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID01817311 dme-miR-10-3p miRNA MIMAT0012531 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID02016292 dme-miR-2c-3p miRNA MIMAT0000411 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID02580337 dme-miR-308-3p miRNA MIMAT0000399 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID02842092 dme-miR-971-3p miRNA MIMAT0005487 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID02973574 dme-miR-994-5p miRNA MIMAT0005513 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID03235831 dme-miR-1014-3p miRNA MIMAT0005027 Skp2 mRNA 40548 Prediction 0.2202 Skp2 RAID03363353 dme-miR-1006-3p miRNA MIMAT0005019 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID03662951 dme-miR-964-5p miRNA MIMAT0005478 Skp2 mRNA 40548 Prediction 0.1828 Skp2 RAID03796635 dme-miR-100-5p miRNA MIMAT0000357 Skp2 mRNA 40548 Prediction 0.1828