DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 41458 KLHL18 uggucaUGGACUACAUUAUGAGu :||| | ||||||| cgccuaGCCUUA---AAUACUCa 2 18 245 264 [dm3:3R:7833871-7833890:-] 0.6070 141 7 -14.65 -1.3025 MIMAT0000343 dme-miR-280 41458 KLHL18 auAGUAAAGUAUACG--UU-GCAUUUAUGu |:| || || || |: | ||||||| guUUAGUUACUACGCCUAGCCUUAAAUACu 2 26 233 262 [dm3:3R:7833873-7833902:-] 0.6070 155 7 -6.58 -1.0579 MIMAT0005018 dme-miR-1005 41458 KLHL18 gacgCUUAAUUUCUAAGGUCu || || : ||||||| uauaGAUUUUGUCAUUCCAGu 2 18 203 223 [dm3:3R:7833912-7833932:-] 0.6070 149 7 -10.11 -0.9762 MIMAT0012196 dme-miR-2489 41458 KLHL18 ugacGUUUAUGUUGUAUGUUAu :|||||| |||||| gccuUAAAUACUCAUUACAAUa 2 19 251 272 [dm3:3R:7833863-7833884:-] 0.6070 130 6 -13.16 -0.3551 MIMAT0012210 dme-miR-2498* 41458 KLHL18 guuuUUAUUCGUAUUG-UCGGAAau |:| | :| : | |||||| guuuAGUUACUACGCCUAGCCUUaa 3 21 233 257 [dm3:3R:7833878-7833902:-] 0.6070 127 0 -9.42 -0.1721 MIMAT0012211 dme-miR-2498 41458 KLHL18 uucauucugcccuuacGGUCAAa |||||| uauagauuuugucauuCCAGUUa 2 8 203 225 [dm3:3R:7833910-7833932:-] 0.6070 120 6 -8.17 -0.2976 MIMAT0000105 dme-miR-1 41458 KLHL18 gaGGUAUGAAGAAAUGUAAGGu |:||| |:|| |||||| cuCUAUAGAUUUUGUCAUUCCa 2 21 200 221 [dm3:3R:7833914-7833935:-] 0.6070 136 6 -19.57 -0.2158 MIMAT0000109 dme-miR-4 41458 KLHL18 agUUACCAACAGAUCGAAAUa :| ||| | ||||||| uuGAGGGUAACCAAGCUUUAg 2 20 98 118 [dm3:3R:7834017-7834037:-] 0.5433 151 7 -9.95 -0.2001 MIMAT0005474 dme-miR-960 41458 KLHL18 cgAUACG--UUAGACCUUAUGAGu || || |: || ||||||| acUACGCCUAGCCUUAAAUACUCa 2 21 241 264 [dm3:3R:7833871-7833894:-] 0.6070 151 7 -14.38 -1.3082 MIMAT0005479 dme-miR-932 41458 KLHL18 gacguuacgugaugcCUUAACu |||||| uuagguaauuuauguGAAUUGa 2 8 47 68 [dm3:3R:7834067-7834088:-] 0.5433 120 6 -15.42 -0.1356 MIMAT0005484 dme-miR-968 41458 KLHL18 guUGGGAAAUUACCUAUGAUGAau | :: || || |||||||| aaAAUUGUUCAU--AUACUACUca 3 23 175 196 [dm3:3R:7833939-7833960:-] 0.6070 135 0 -8.44 -0.1785 MIMAT0005492 dme-miR-976 41458 KLHL18 cgUAACUACUAUUGAUUAGGuu ||| | || |:|||||| ucAUU-ACAAU-AUUAAUCCuc 3 21 262 281 [dm3:3R:7833854-7833873:-] 0.5184 132 0 -9.71 -0.1548 MIMAT0005520 dme-miR-1000 41458 KLHL18 ugacgacacuguccUGUUAUa |||||| cuuaaauacucauuACAAUAu 2 8 253 273 [dm3:3R:7833862-7833882:-] 0.6070 120 6 -7.12 -0.2465 MIMAT0005027 dme-miR-1014 41458 KLHL18 gacguUUACUUUUACUUAAaa ||| | :|||||| uagguAAUUUAUGUGAAUUga 3 17 48 68 [dm3:3R:7834067-7834087:-] 0.5433 132 0 -6.39 -0.1087

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score KLHL18 RAID00360261 dme-miR-1005-3p miRNA MIMAT0005018 KLHL18 mRNA 41458 Prediction 0.1828 KLHL18 RAID00524886 dme-miR-1014-3p miRNA MIMAT0005027 KLHL18 mRNA 41458 Prediction 0.1828 KLHL18 RAID00877006 dme-miR-1017-3p miRNA MIMAT0005030 KLHL18 mRNA 41458 Prediction 0.1828 KLHL18 RAID01527481 dme-miR-1000-5p miRNA MIMAT0005520 KLHL18 mRNA 41458 Prediction 0.1828 KLHL18 RAID01549220 dme-miR-79-3p miRNA MIMAT0000352 KLHL18 mRNA 41458 Prediction 0.1828 KLHL18 RAID01860018 dme-miR-4-3p miRNA MIMAT0000109 KLHL18 mRNA 41458 Prediction 0.2202 KLHL18 RAID01889577 dme-miR-315-5p miRNA MIMAT0000407 KLHL18 mRNA 41458 Prediction 0.1828 KLHL18 RAID02450938 dme-miR-968-5p miRNA MIMAT0005484 KLHL18 mRNA 41458 Prediction 0.1828 KLHL18 RAID02556170 dme-miR-932-5p miRNA MIMAT0005479 KLHL18 mRNA 41458 Prediction 0.2202 KLHL18 RAID02629845 dme-miR-1-3p miRNA MIMAT0000105 KLHL18 mRNA 41458 Prediction 0.2202 KLHL18 RAID02897864 dme-miR-976-3p miRNA MIMAT0005492 KLHL18 mRNA 41458 Prediction 0.1828 KLHL18 RAID03263056 dme-miR-263b-5p miRNA MIMAT0000362 KLHL18 mRNA 41458 Prediction 0.1828 KLHL18 RAID03455657 dme-miR-12-5p miRNA MIMAT0000117 KLHL18 mRNA 41458 Prediction 0.1828 KLHL18 RAID03878997 dme-miR-960-5p miRNA MIMAT0005474 KLHL18 mRNA 41458 Prediction 0.2202