DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 43091 CG4673 auagUAAAGUAUACGUUGCAUUUAUgu |||| || | : : |||||| gaaaAUUUAAUUUAU-UUUUAAAUAaa 3 24 237 262 [dm3:3R:21436750-21436775:-] 0.6587 133 0 -5.29 -0.6520 MIMAT0005502 dme-miR-985 43091 CG4673 acggGCUGGUAACCUUGUAAAc :||: : |||| |||| gaaaUGAUGGAAGGAAAAUUUa 2 19 224 245 [dm3:3R:21436767-21436788:-] 0.6587 122 0 -8.04 -0.1661 MIMAT0005026 dme-miR-1013 43091 CG4673 gcUCAAGCCGUAUGAAAAUa | ||: : ||:||||| aaAAUUUAAUUUAUUUUUAa 2 19 238 257 [dm3:3R:21436755-21436774:-] 0.6587 134 0 -3.30 -0.2361 MIMAT0011791 dme-miR-2283 43091 CG4673 uaacagcaUAAGUACUAUAAAAg |||:| |||||| gaaggaaaAUUUAAUUUAUUUUu 2 16 233 255 [dm3:3R:21436757-21436779:-] 0.6587 123 6 -4.00 -0.4643 MIMAT0012196 dme-miR-2489 43091 CG4673 ugACGUUUAUGUUGUAUGUUAu ||:||: |: :||| ||| ugUGUAAGAAUUUUAUAAAAUa 2 21 198 219 [dm3:3R:21436793-21436814:-] 0.6073 128 0 -9.05 -0.1519 MIMAT0012201 dme-miR-2493 43091 CG4673 ugCGGAGCGUGUUUAUGUGUGCc |: || ::|:| ||||||| ggGUGUCCUGCGA--ACACACGu 2 22 118 138 [dm3:3R:21436874-21436894:-] 0.5559 150 7 -20.60 -0.4136 MIMAT0012206 dme-miR-2496* 43091 CG4673 augcuaccggAGAGUGUGUGCGUg || || ||||| | -------gaaUCCCAGACACGAAa 2 15 1 17 [dm3:3R:21436995-21437011:-] 0.5350 122 0 -11.81 -0.1486 MIMAT0012216 dme-miR-2501 43091 CG4673 aaucggguccgugaggUUUGAAUg |||:||| cgaaaugauggaaggaAAAUUUAa 2 9 223 246 [dm3:3R:21436766-21436789:-] 0.6587 124 0 -8.59 -0.2022 MIMAT0012531 dme-miR-10-3p 43091 CG4673 uuuggagagaucuuggCUUAAAc |||||| uguaauccuuguguaaGAAUUUu 2 8 189 211 [dm3:3R:21436801-21436823:-] 0.6073 120 6 -7.22 -0.2399 MIMAT0000398 dme-miR-307 43091 CG4673 gaGUGAGU-UCCUCCAA-CACu ||||:| ||| |||| ||| caCACUUAGAGGCGGUUCGUGc 2 19 146 167 [dm3:3R:21436845-21436866:-] 0.5559 133 0 -20.54 -0.1640 MIMAT0000398 dme-miR-307 43091 CG4673 gagugaguuccucCAACACu |||||| auaaauuucaauuGUUGUGc 2 8 258 277 [dm3:3R:21436735-21436754:-] 0.6587 120 6 -9.31 -0.7667 MIMAT0005484 dme-miR-968 43091 CG4673 guugggAAAUUACCUAUG-AUGAAu || ||| |||| ||||| uaaagaUUCAAU-CAUACUUACUUa 2 19 73 96 [dm3:3R:21436916-21436939:-] 0.5559 124 0 -10.55 -1.1095 MIMAT0005504 dme-miR-987 43091 CG4673 guagUUAGGUCUGA--UAAAUGAAAu || | |:| |||||:||| auggAAGGAAAAUUUAAUUUAUUUUu 2 21 230 255 [dm3:3R:21436757-21436782:-] 0.6587 135 0 -5.96 -0.1435 MIMAT0005506 dme-miR-989 43091 CG4673 caagGUGAUGCA-GUGUA-GUGu ||| |||| ||||| ||| cgaaCAC-ACGUACACAUGCACa 2 18 128 149 [dm3:3R:21436863-21436884:-] 0.5559 126 0 -21.40 -0.7036 MIMAT0005019 dme-miR-1006 43091 CG4673 gauacuuauucuuuagCUUAAAu |||||| uguaauccuuguguaaGAAUUUu 2 8 189 211 [dm3:3R:21436801-21436823:-] 0.6073 120 6 -5.19 -0.2421 MIMAT0005027 dme-miR-1014 43091 CG4673 gacgUUUACUUUU-ACUUAAAa :|| ||||| | ||||| gaugGAAGGAAAAUUUAAUUUa 2 18 229 250 [dm3:3R:21436762-21436783:-] 0.6587 132 0 -6.57 -0.2404 MIMAT0005027 dme-miR-1014 43091 CG4673 gacguuuacuUUUACUUAAAa |||| ||||| auuuauuuuuAAAUAAAUUUc 2 12 246 266 [dm3:3R:21436746-21436766:-] 0.6587 123 0 -1.90 -0.1763 MIMAT0005027 dme-miR-1014 43091 CG4673 gacguuuacuuuuaCUUAAAa |||||| uaauccuuguguaaGAAUUUu 2 8 191 211 [dm3:3R:21436801-21436821:-] 0.6073 120 6 -5.56 -0.2421

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Npl4 RAID01136461 dme-miR-1014-3p miRNA MIMAT0005027 Npl4 mRNA 43091 Prediction 0.1828 Npl4 RAID01247376 dme-miR-1006-3p miRNA MIMAT0005019 Npl4 mRNA 43091 Prediction 0.1828 Npl4 RAID01272922 dme-miR-987-5p miRNA MIMAT0005504 Npl4 mRNA 43091 Prediction 0.1828 Npl4 RAID02080547 dme-miR-307a-3p miRNA MIMAT0000398 Npl4 mRNA 43091 Prediction 0.1828 Npl4 RAID02782995 dme-bantam-3p miRNA MIMAT0000365 Npl4 mRNA 43091 Prediction 0.1828 Npl4 RAID03270071 dme-miR-989-3p miRNA MIMAT0005506 Npl4 mRNA 43091 Prediction 0.1828 Npl4 RAID03442745 dme-miR-968-5p miRNA MIMAT0005484 Npl4 mRNA 43091 Prediction 0.1828 Npl4 RAID03783949 dme-miR-10-3p miRNA MIMAT0012531 Npl4 mRNA 43091 Prediction 0.1828