DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 43351 Mes-4 ucAGCGUCCGAGGUGAAUUUAUAAAu |:|:| :| :: |:||||||| ugUUGUA--UUAUGAAUGAAUAUUUu 2 25 60 83 [dm3:3R:23758822-23758845:-] 0.4532 149 7 -10.11 -0.9845 MIMAT0005499 dme-miR-983 43351 Mes-4 agUAAU-CAAGCUUUGCAUAAUa |||| ||: : :|||||| acAUUACAUUUUUGUUGUAUUAu 2 21 48 70 [dm3:3R:23758835-23758857:-] 0.4532 135 6 -12.63 -0.1054 MIMAT0005502 dme-miR-985 43351 Mes-4 acgggcugguAACCUUGUAAac || |||||| caagaaaauuUUUUAACAUUac 3 13 33 54 [dm3:3R:23758851-23758872:-] 0.4549 124 0 -4.88 -0.2041 MIMAT0011791 dme-miR-2283 43351 Mes-4 uaACAGCAUAA---GUAC-UAUAAAAg |||:||||| ||| ||||||| uuUGUUGUAUUAUGAAUGAAUAUUUUu 2 22 58 84 [dm3:3R:23758821-23758847:-] 0.4532 167 7 -17.65 -1.0843 MIMAT0012208 dme-miR-2497* 43351 Mes-4 uuGUUGAUGUAAAACGUUA-CGAAUg |||:||:| | | ||| ||||| gcCAAUUAUA--UAGAAAUCGCUUAa 2 24 6 29 [dm3:3R:23758876-23758899:-] 0.4549 132 0 -13.00 -1.0492 MIMAT0000105 dme-miR-1 43351 Mes-4 gaggUAUGAAGAAAUGUAAGGu | |:||:|| ||||| | aagaAAAUUUUUUAACAUUACa 2 19 34 55 [dm3:3R:23758850-23758871:-] 0.4549 134 0 -9.57 -0.1530 MIMAT0000113 dme-miR-8 43351 Mes-4 cuGUAGAAAUGGA--CUGU-CAUAAu :||:||||:|| ||| ||||| aaUAUUUUUAUCUACCACAUGUAUUu 2 22 76 101 [dm3:3R:23758804-23758829:-] 0.4515 136 0 -16.77 -0.8977 MIMAT0000335 dme-miR-219 43351 Mes-4 guuCUUA-ACGCAAAC-CUGUUAGu | || | : || | ||||||| gacGUAUGUUUUUUAGAGACAAUCu 2 21 118 142 [dm3:3R:23758763-23758787:-] 0.4515 146 7 -11.16 -0.7053 MIMAT0000398 dme-miR-307 43351 Mes-4 gagUGAGUUCCUCCAACACu || | ||| |||||| ugaACAGAUGGAUGUUGUGa 2 18 157 176 [dm3:3R:23758729-23758748:-] 0.4873 129 6 -15.33 -0.1205

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Mes-4 RAID01498012 dme-miR-8-3p miRNA MIMAT0000113 Mes-4 mRNA 43351 Prediction 0.1828 Mes-4 RAID01565045 dme-miR-284-3p miRNA MIMAT0000348 Mes-4 mRNA 43351 Prediction 0.1828 Mes-4 RAID02176356 dme-miR-1-3p miRNA MIMAT0000105 Mes-4 mRNA 43351 Prediction 0.2202 Mes-4 RAID02331963 dme-mir-307a miRNA MI0000418 Mes-4 mRNA 43351 Prediction 0.1828 Mes-4 RAID02980506 dme-miR-307a-3p miRNA MIMAT0000398 Mes-4 mRNA 43351 Prediction 0.1828 Mes-4 RAID03389997 dme-miR-957-3p miRNA MIMAT0005470 Mes-4 mRNA 43351 Prediction 0.1828 Mes-4 RAID03773037 dme-miR-219-5p miRNA MIMAT0000335 Mes-4 mRNA 43351 Prediction 0.2202