DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005509 dme-miR-991 43434 cul-5 ugaaagguuugauguUGAAAUu |||||| aacuaaaauagcaauACUUUAu 2 8 616 637 [dm3:3R:24885038-24885059:-] 0.6249 120 6 -7.98 -0.1379 MIMAT0011784 dme-miR-2279* 43434 cul-5 uuaaagUGUGUGUCUAUAAAUu |:|| : ||:|||| auagcaAUAC-UUUAUGUUUAa 2 17 623 643 [dm3:3R:24885032-24885052:-] 0.6249 126 0 -8.37 -0.1020 MIMAT0012196 dme-miR-2489 43434 cul-5 ugaCGUUU--AUGUUG----UAU-GUUAu ||||| ||:||| ||| |||| aucGCAAAACUAUAACUAAAAUAGCAAUa 2 20 603 631 [dm3:3R:24885044-24885072:-] 0.6249 121 0 -10.42 -1.2571 MIMAT0012199 dme-miR-2492 43434 cul-5 aaacuuucgagAGCUGUUUUGua ||| |||||| cucacacgggaUCG-CAAAACua 3 13 593 614 [dm3:3R:24885061-24885082:-] 0.6249 126 0 -9.57 -0.1314 MIMAT0012200 dme-miR-2493* 43434 cul-5 acCGAC-ACACACACACAC-UCg |||| | | | |||||| || cuGCUGUUUUCUAUGUGUGUAGu 2 20 414 436 [dm3:3R:24885239-24885261:-] 0.5288 126 0 -16.20 -0.7523 MIMAT0012216 dme-miR-2501 43434 cul-5 aaucGGGUCCGUGAGGUUUGA-AUg | |:|| | | ||||| || cucaCACGGGAUCGCAAAACUAUAa 2 21 593 617 [dm3:3R:24885058-24885082:-] 0.6249 120 0 -11.68 -1.0880 MIMAT0000341 dme-miR-279 43434 cul-5 aauuACUCACACCUAGAUCAGu ||| || ||||||| cuccUGAUCCCGGCUCUAGUCu 2 19 8 29 [dm3:3R:24885646-24885667:-] 0.4706 150 7 -12.84 -0.2450 MIMAT0000342 dme-miR-33 43434 cul-5 guUACGCUGAUGUUACGUGGa :|||| |||| ||||||| uuGUGCG-CUAC-AUGCACCc 2 20 326 344 [dm3:3R:24885331-24885349:-] 0.4927 163 7 -23.83 -0.1619 MIMAT0000359 dme-miR-286 43434 cul-5 ucgugcucacaaGCC-AGAUCAGu ||| ||||||| ugcuccugauccCGGCUCUAGUCu 2 12 6 29 [dm3:3R:24885646-24885669:-] 0.4706 146 7 -16.69 -0.2472 MIMAT0000408 dme-miR-316 43434 cul-5 gcggucauucgccuUUUUCUGu ||||||| cccucagagcauuuAAAAGACc 2 9 196 217 [dm3:3R:24885458-24885479:-] 0.4817 140 7 -11.91 -0.4118 MIMAT0005479 dme-miR-932 43434 cul-5 gacguuACGUGAUGCCUUAACu ||: ||||||||||| uuuuucUGU-CUACGGAAUUGg 2 17 132 152 [dm3:3R:24885523-24885543:-] 0.4706 162 7 -21.64 -0.2752 MIMAT0005492 dme-miR-976 43434 cul-5 cgUAACUACUAUUGAUUAG-GUu || || ||: |||||| || gcAUGGA--AUGCCUAAUCACAc 2 21 565 585 [dm3:3R:24885090-24885110:-] 0.5386 121 0 -10.78 -0.4019 MIMAT0005504 dme-miR-987 43434 cul-5 guaguuaggucugauaaAUGAAAu |||||| uauaacuaaaauagcaaUACUUUa 2 8 613 636 [dm3:3R:24885039-24885062:-] 0.6249 120 6 -6.37 -0.2208 MIMAT0005507 dme-miR-137 43434 cul-5 gaugcacauaagaguUCGUUAu |||||| aacuauaacuaaaauAGCAAUa 2 8 610 631 [dm3:3R:24885044-24885065:-] 0.6249 120 6 -8.68 -0.2695 MIMAT0005515 dme-miR-996 43434 cul-5 ucuGCUCGUACUUUAGAUCAGu :|| | | : ||||||| uccUGAUCCCG-GCUCUAGUCu 2 20 9 29 [dm3:3R:24885646-24885666:-] 0.4706 141 7 -11.52 -0.2428 MIMAT0005519 dme-miR-999 43434 cul-5 ucUGUGUCAGAAUGUCAAUUGu || : | || ||||||: auACUUUAUGUUUAAGUUAAUg 2 21 629 650 [dm3:3R:24885025-24885046:-] 0.6249 132 0 -7.60 -0.1954

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cul5 RAID00101441 dme-miR-279-3p miRNA MIMAT0000341 Cul5 mRNA 43434 Prediction 0.2202 Cul5 RAID00152406 dme-miR-966-5p miRNA MIMAT0005481 Cul5 mRNA 43434 Prediction 0.1828 Cul5 RAID00299685 dme-miR-283-5p miRNA MIMAT0000347 Cul5 mRNA 43434 Prediction 0.1828 Cul5 RAID00694870 dme-miR-286-3p miRNA MIMAT0000359 Cul5 mRNA 43434 Prediction 0.2202 Cul5 RAID00698070 dme-miR-33-5p miRNA MIMAT0000342 Cul5 mRNA 43434 Prediction 0.1828 Cul5 RAID01001651 dme-miR-958-3p miRNA MIMAT0005471 Cul5 mRNA 43434 Prediction 0.1828 Cul5 RAID01409846 dme-miR-960-5p miRNA MIMAT0005474 Cul5 mRNA 43434 Prediction 0.1828 Cul5 RAID01471025 dme-miR-974-5p miRNA MIMAT0005490 Cul5 mRNA 43434 Prediction 0.1828 Cul5 RAID01815709 dme-miR-987-5p miRNA MIMAT0005504 Cul5 mRNA 43434 Prediction 0.2202 Cul5 RAID01942676 dme-miR-316-5p miRNA MIMAT0000408 Cul5 mRNA 43434 Prediction 0.2202 Cul5 RAID02065952 dme-miR-277-3p miRNA MIMAT0000338 Cul5 mRNA 43434 Prediction 0.1828 Cul5 RAID02321003 dme-miR-999-3p miRNA MIMAT0005519 Cul5 mRNA 43434 Prediction 0.1828 Cul5 RAID02618526 dme-miR-87-3p miRNA MIMAT0000361 Cul5 mRNA 43434 Prediction 0.1828 Cul5 RAID03369568 dme-miR-996-3p miRNA MIMAT0005515 Cul5 mRNA 43434 Prediction 0.2202 Cul5 RAID03434157 dme-miR-976-3p miRNA MIMAT0005492 Cul5 mRNA 43434 Prediction 0.1828 Cul5 RAID03659387 dme-miR-932-5p miRNA MIMAT0005479 Cul5 mRNA 43434 Prediction 0.2202 Cul5 RAID03869030 dme-miR-137-3p miRNA MIMAT0005507 Cul5 mRNA 43434 Prediction 0.2202